HHsearch alignment for GI: 254781091 and conserved domain: COG1104

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=670.62  Aligned_cols=373  Identities=42%  Similarity=0.658  Sum_probs=355.6

Q ss_pred             CCEECCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHH
Q ss_conf             70012157888989899999999996-42885236589999999999999999997298977898866853876445565
Q gi|254781091|r    3 KRVYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTP   81 (383)
Q Consensus         3 ~~iYlD~aattp~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~   81 (383)
T Consensus         1 ~~iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g   80 (386)
T COG1104           1 MMIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG   80 (386)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             96255543568898999999999987531896115575799999999999999998399978089956984777799986


Q ss_pred             HHHHCCCCCCCCEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf             4421022456645873332122111222222---2222222222222111023455324431135653265403434443
Q gi|254781091|r   82 HFYQGSHKISIDSLYISAIEHPAVYAGGHFP---SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETG  158 (383)
Q Consensus        82 ~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~---~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG  158 (383)
T Consensus        81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T-----~LVSim~aNnE~G  155 (386)
T COG1104          81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT-----ILVSIMHANNETG  155 (386)
T ss_pred             HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCC-----EEEEEEECCCCEE
T ss_conf             48764235689858875543499999999998669757996888897287999998638884-----5999985026820


Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33211235652034465334443233655444443343106873054332234320110145742012212247742122
Q gi|254781091|r  159 VIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQ  238 (383)
Q Consensus       159 ~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~~Gg~~e~~~  238 (383)
T Consensus       156 ~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~-~p~i~GGgQE~g~  234 (386)
T COG1104         156 TIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRL-EPLIHGGGQERGL  234 (386)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEHHHHCCCEECCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCC-CCEEECCCCCCCC
T ss_conf             112099999999975981797613325760046021576568731121369984279998799873-7446047678997


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             22222112221001221100100245653210123333444443210001223221103652289857999999999987
Q gi|254781091|r  239 RAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALD  318 (383)
Q Consensus       239 ~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~  318 (383)
T Consensus       235 RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~  314 (386)
T COG1104         235 RSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALD  314 (386)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHCC
T ss_conf             88875579999999999999987788899999999999999985099689868854578986899968975789998610


Q ss_pred             HCCCEEEECHHHCCCCCCCCHHHHHCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             589699871133886433101467628887--476599990788899999999999999998623
Q gi|254781091|r  319 LEGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRVSCGDSTTQEDIDIFLNALQKIIRTST  381 (383)
Q Consensus       319 ~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~--~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~~~  381 (383)
T Consensus       315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr  379 (386)
T COG1104         315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR  379 (386)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             40868733643458998714999980999688372489973799989999999999999999986