HHsearch alignment for GI: 254781091 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=670.62 Aligned_cols=373 Identities=42% Similarity=0.658 Sum_probs=355.6
Q ss_pred CCEECCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHH
Q ss_conf 70012157888989899999999996-42885236589999999999999999997298977898866853876445565
Q gi|254781091|r 3 KRVYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTP 81 (383)
Q Consensus 3 ~~iYlD~aattp~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~ 81 (383)
T Consensus 1 ~~iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 1 MMIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG 80 (386)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 96255543568898999999999987531896115575799999999999999998399978089956984777799986
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 4421022456645873332122111222222---2222222222222111023455324431135653265403434443
Q gi|254781091|r 82 HFYQGSHKISIDSLYISAIEHPAVYAGGHFP---SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETG 158 (383)
Q Consensus 82 ~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~---~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG 158 (383)
T Consensus 81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T-----~LVSim~aNnE~G 155 (386)
T COG1104 81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT-----ILVSIMHANNETG 155 (386)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCC-----EEEEEEECCCCEE
T ss_conf 48764235689858875543499999999998669757996888897287999998638884-----5999985026820
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33211235652034465334443233655444443343106873054332234320110145742012212247742122
Q gi|254781091|r 159 VIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQ 238 (383)
Q Consensus 159 ~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~~Gg~~e~~~ 238 (383)
T Consensus 156 ~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~-~p~i~GGgQE~g~ 234 (386)
T COG1104 156 TIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRL-EPLIHGGGQERGL 234 (386)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEHHHHCCCEECCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCC-CCEEECCCCCCCC
T ss_conf 112099999999975981797613325760046021576568731121369984279998799873-7446047678997
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 22222112221001221100100245653210123333444443210001223221103652289857999999999987
Q gi|254781091|r 239 RAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALD 318 (383)
Q Consensus 239 ~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~ 318 (383)
T Consensus 235 RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~ 314 (386)
T COG1104 235 RSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALD 314 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHCC
T ss_conf 88875579999999999999987788899999999999999985099689868854578986899968975789998610
Q ss_pred HCCCEEEECHHHCCCCCCCCHHHHHCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 589699871133886433101467628887--476599990788899999999999999998623
Q gi|254781091|r 319 LEGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRVSCGDSTTQEDIDIFLNALQKIIRTST 381 (383)
Q Consensus 319 ~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~--~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~~~ 381 (383)
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr 379 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379 (386)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 40868733643458998714999980999688372489973799989999999999999999986