HHsearch alignment for GI: 254781091 and conserved domain: COG1167
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].
Probab=99.65 E-value=1.7e-14 Score=107.47 Aligned_cols=288 Identities=20% Similarity=0.284 Sum_probs=179.0
Q ss_pred HHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 97298977898866853876445565442102245664587333212211122222222222222222221110234553
Q gi|254781091|r 56 DFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDF 135 (383)
Q Consensus 56 ~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~g~i~~~~l~~~ 135 (383)
T Consensus 149 ~g~~~~~~~IiiT~G~q~al~l~~~~l~------~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~-~~e~le~~ 221 (459)
T COG1167 149 RGISCEPEQIVITSGAQQALDLLLRLLL------DPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGI-DPEALEEA 221 (459)
T ss_pred CCCCCCHHHEEECCCHHHHHHHHHHHHC------CCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCC-CHHHHHHH
T ss_conf 4998883038980649999999999847------9999999899982899999998699478606788898-97999999
Q ss_pred HHHHHCCCCCCEEEE-ECCCCCCCCCCCH---HHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCC---CCEEEEECC
Q ss_conf 244311356532654-0343444333211---2356520344653344432336----5544444334---310687305
Q gi|254781091|r 136 LEQRNSTCGIPMIAV-MFVNNETGVIQPI---KEIAQIVKEYQGILVVDAVQAA----GRIPLSIEEI---KADFLIISS 204 (383)
Q Consensus 136 i~~~t~~~~~~LVs~-~~~~n~tG~i~pi---~~I~~~~~~~g~~~~vD~aqa~----g~~~id~~~~---~~D~~~~S~ 204 (383)
T Consensus 222 ~~~~----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSF 297 (459)
T COG1167 222 LAQW----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSF 297 (459)
T ss_pred HHCC----CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHCCCCCEEEECCC
T ss_conf 8506----972899788963889874599999999999997598799867743321588998345762899978999132
Q ss_pred CCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCC-----HHHHHHHHHHHHHHHHH
Q ss_conf 433223-43201101457420122122477421222-222211222100122110010-----02456532101233334
Q gi|254781091|r 205 HKLGAP-VGAGALVFREDILLPSPLLRGGDQEKGQR-AGTENYAVIGGFAVAAQQMVK-----DIQKRSSRVFAIRDYLE 277 (383)
Q Consensus 205 hK~~GP-~G~G~L~~r~~~~~~~p~~~Gg~~e~~~~-~GT~~~~~i~~~~~al~~~~~-----~~~~~~~~~~~L~~~l~ 277 (383)
T Consensus 298 SK~l~PglRlG~vv~p~~~~~~~~~~------k~~~~~~~s~~-~Q~~---la~~l~~G~~~~hl~~lR~~y~~rr~~l~ 367 (459)
T COG1167 298 SKTLAPGLRLGYVVAPPELIEKLLRL------KQAADLGPSSL-SQAA---LAAFLLSGHYDRHLRRLRREYARRRDALL 367 (459)
T ss_pred HHHHCCCCCEEEEECCHHHHHHHHHH------HHHHCCCCCHH-HHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66514675549997299999999999------87625699899-9999---99999728599999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCC-EEEEEEC-CCCHHHHHHHHHHCCCEEEE-CHHHCCCCCCCCHHHHHCCCCCCCCEEE
Q ss_conf 4444321000122322110365-2289857-99999999998758969987-1133886433101467628887476599
Q gi|254781091|r 278 QELKKLIPNIIIYGKDAERISN-TCCFSIP-FLKAEVLQIALDLEGIAVSA-GSACSSGKIKKNHVLAAMGFDTSQGAVR 354 (383)
Q Consensus 278 ~~l~~~~~~~~i~~~~~~~~~~-i~~~~~~-~~~~~~v~~~l~~~gI~v~~-G~~C~~~~~~~~~vl~~~g~~~~~g~vR 354 (383)
T Consensus 368 ~~L~~~~~~~~~~~~p~---gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~-------------~~~~~~~R 431 (459)
T COG1167 368 EALAEYLPELATWTRPE---GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSAD-------------GDPRNGLR 431 (459)
T ss_pred HHHHHHCCCCEEEECCC---CEEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCC-------------CCCCCEEE
T ss_conf 99997478763772699---558999986998888999999998699794588663578-------------98898289
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 990788899999999999999998623
Q gi|254781091|r 355 VSCGDSTTQEDIDIFLNALQKIIRTST 381 (383)
Q Consensus 355 iS~~~~nT~~dId~l~~~L~~iv~~~~ 381 (383)
T Consensus 432 l~~s~~-~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 432 LSFSSP-SEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred EECCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 988989-99999999999999999762