HHsearch alignment for GI: 254781091 and conserved domain: PRK01278
>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.74 E-value=2.9e-15 Score=112.18 Aligned_cols=326 Identities=19% Similarity=0.202 Sum_probs=182.8
Q ss_pred CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
Q ss_conf 001215788------89898999999999964288523658999999999999999999729897789886685387644
Q gi|254781091|r 4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW 77 (383)
Q Consensus 4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~ 77 (383)
T Consensus 31 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~~~~~~~~~--~~~~--~la-~~L~~~~~--~d~v~f~~sGsEAve~ 103 (389)
T PRK01278 31 ERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRI--PEQE--RLA-ERLVENSF--ADKVFFTNSGAEAVEC 103 (389)
T ss_pred CEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCC--HHHH--HHH-HHHHHCCC--CCEEEEECCHHHHHHH
T ss_conf 999993609886122899789999999998656676565368--7999--999-99753367--6879996874899999
Q ss_pred HHHHH-HHHCCCCCCC-CEEEECCC-CCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 55654-4210224566-45873332-122111222222222------------222222222211102345532443113
Q gi|254781091|r 78 VLTPH-FYQGSHKISI-DSLYISAI-EHPAVYAGGHFPSHK------------IHKIPVLSKGIVDIQALTDFLEQRNST 142 (383)
Q Consensus 78 ~i~~~-~~~~~~~~~~-~~ii~s~~-eH~s~~~~~~~~~~~------------v~~v~~~~~g~i~~~~l~~~i~~~t~~ 142 (383)
T Consensus 104 AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~~~~~iA- 177 (389)
T PRK01278 104 AIKTARRYQYGKGHPERYRIITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVPF-----GDIEALKAAITPNTA- 177 (389)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCC-----CCHHHHHHHHCCCCE-
T ss_conf 99999998885399997289998888886763511357884433666899888246778-----978999986288817-
Q ss_pred CCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC----CCCCCCCCCEEEEECCCC-CCCCCC
Q ss_conf 56532654034344433321----1235652034465334443233-6554----444433431068730543-322343
Q gi|254781091|r 143 CGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI----PLSIEEIKADFLIISSHK-LGAPVG 212 (383)
Q Consensus 143 ~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~----~id~~~~~~D~~~~S~hK-~~GP~G 212 (383)
T Consensus 178 ----aviiEPi~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--K~l~gG~P 251 (389)
T PRK01278 178 ----AILIEPIQGEGGIRPLPDEFLKGLRQLCDENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPDIMALA--KGIGGGFP 251 (389)
T ss_pred ----EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEC--CCCCCCCC
T ss_conf ----999968888889606999999999999986065387421000777556642200367689867870--12468874
Q ss_pred CHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 20110145742012-2122477421222222211222100122110010024565321012333344444321000-122
Q gi|254781091|r 213 AGALVFREDILLPS-PLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNI-IIY 290 (383)
Q Consensus 213 ~G~L~~r~~~~~~~-p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~-~i~ 290 (383)
T Consensus 252 ~sav~~~~ei~~~~~~g~~~-----~T~~g--np~~~aaala~L~~i~~--~~l~~~v~~~G~~l~~~L~~l~~~~p~~i 322 (389)
T PRK01278 252 LGACLATEEAAKGMTPGTHG-----STYGG--NPLAMAVGNAVLDVVLA--PGFLDNVQKMGLYLKQKLESLVDRFPDVI 322 (389)
T ss_pred EEEEEECHHHHHHCCCCCCC-----CCCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 27998638878543688767-----79997--99999999999999986--46999999999999999999987686713
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 32211036522898579999999999875896998711338864331014676288874765999907888999999999
Q gi|254781091|r 291 GKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFL 370 (383)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~ 370 (383)
T Consensus 323 ~~-vRG~Gl~~gie~~-~~~~~i~~~~~~~Gll~~~~-----------------g----~~~lr~~PpL~it~~ei~~~~ 379 (389)
T PRK01278 323 EE-VRGEGLMLGLKCV-VPSRDLVAALRDEGLLTVPA-----------------G----DNVVRLLPPLIITEEEIDEAL 379 (389)
T ss_pred EE-EEEEEEEEEEEEC-CCHHHHHHHHHHCCCEEEEC-----------------C----CCEEEEECCCCCCHHHHHHHH
T ss_conf 55-6450369999945-88999999999799389727-----------------9----997999788139899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999862
Q gi|254781091|r 371 NALQKIIRTS 380 (383)
Q Consensus 371 ~~L~~iv~~~ 380 (383)
T Consensus 380 ~~l~~al~~v 389 (389)
T PRK01278 380 ERLERAAESL 389 (389)
T ss_pred HHHHHHHHHC
T ss_conf 9999999759