HHsearch alignment for GI: 254781091 and conserved domain: PRK01278

>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.74  E-value=2.9e-15  Score=112.18  Aligned_cols=326  Identities=19%  Similarity=0.202  Sum_probs=182.8

Q ss_pred             CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
Q ss_conf             001215788------89898999999999964288523658999999999999999999729897789886685387644
Q gi|254781091|r    4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW   77 (383)
Q Consensus         4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~   77 (383)
T Consensus        31 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~~~~~~~~~--~~~~--~la-~~L~~~~~--~d~v~f~~sGsEAve~  103 (389)
T PRK01278         31 ERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRI--PEQE--RLA-ERLVENSF--ADKVFFTNSGAEAVEC  103 (389)
T ss_pred             CEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCC--HHHH--HHH-HHHHHCCC--CCEEEEECCHHHHHHH
T ss_conf             999993609886122899789999999998656676565368--7999--999-99753367--6879996874899999


Q ss_pred             HHHHH-HHHCCCCCCC-CEEEECCC-CCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             55654-4210224566-45873332-122111222222222------------222222222211102345532443113
Q gi|254781091|r   78 VLTPH-FYQGSHKISI-DSLYISAI-EHPAVYAGGHFPSHK------------IHKIPVLSKGIVDIQALTDFLEQRNST  142 (383)
Q Consensus        78 ~i~~~-~~~~~~~~~~-~~ii~s~~-eH~s~~~~~~~~~~~------------v~~v~~~~~g~i~~~~l~~~i~~~t~~  142 (383)
T Consensus       104 AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~~~~~iA-  177 (389)
T PRK01278        104 AIKTARRYQYGKGHPERYRIITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVPF-----GDIEALKAAITPNTA-  177 (389)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCC-----CCHHHHHHHHCCCCE-
T ss_conf             99999998885399997289998888886763511357884433666899888246778-----978999986288817-


Q ss_pred             CCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC----CCCCCCCCCEEEEECCCC-CCCCCC
Q ss_conf             56532654034344433321----1235652034465334443233-6554----444433431068730543-322343
Q gi|254781091|r  143 CGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI----PLSIEEIKADFLIISSHK-LGAPVG  212 (383)
Q Consensus       143 ~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~----~id~~~~~~D~~~~S~hK-~~GP~G  212 (383)
T Consensus       178 ----aviiEPi~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--K~l~gG~P  251 (389)
T PRK01278        178 ----AILIEPIQGEGGIRPLPDEFLKGLRQLCDENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPDIMALA--KGIGGGFP  251 (389)
T ss_pred             ----EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEC--CCCCCCCC
T ss_conf             ----999968888889606999999999999986065387421000777556642200367689867870--12468874


Q ss_pred             CHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Q ss_conf             20110145742012-2122477421222222211222100122110010024565321012333344444321000-122
Q gi|254781091|r  213 AGALVFREDILLPS-PLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNI-IIY  290 (383)
Q Consensus       213 ~G~L~~r~~~~~~~-p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~-~i~  290 (383)
T Consensus       252 ~sav~~~~ei~~~~~~g~~~-----~T~~g--np~~~aaala~L~~i~~--~~l~~~v~~~G~~l~~~L~~l~~~~p~~i  322 (389)
T PRK01278        252 LGACLATEEAAKGMTPGTHG-----STYGG--NPLAMAVGNAVLDVVLA--PGFLDNVQKMGLYLKQKLESLVDRFPDVI  322 (389)
T ss_pred             EEEEEECHHHHHHCCCCCCC-----CCCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             27998638878543688767-----79997--99999999999999986--46999999999999999999987686713


Q ss_pred             CCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf             32211036522898579999999999875896998711338864331014676288874765999907888999999999
Q gi|254781091|r  291 GKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFL  370 (383)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~  370 (383)
T Consensus       323 ~~-vRG~Gl~~gie~~-~~~~~i~~~~~~~Gll~~~~-----------------g----~~~lr~~PpL~it~~ei~~~~  379 (389)
T PRK01278        323 EE-VRGEGLMLGLKCV-VPSRDLVAALRDEGLLTVPA-----------------G----DNVVRLLPPLIITEEEIDEAL  379 (389)
T ss_pred             EE-EEEEEEEEEEEEC-CCHHHHHHHHHHCCCEEEEC-----------------C----CCEEEEECCCCCCHHHHHHHH
T ss_conf             55-6450369999945-88999999999799389727-----------------9----997999788139899999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999862
Q gi|254781091|r  371 NALQKIIRTS  380 (383)
Q Consensus       371 ~~L~~iv~~~  380 (383)
T Consensus       380 ~~l~~al~~v  389 (389)
T PRK01278        380 ERLERAAESL  389 (389)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999759