HHsearch alignment for GI: 254781091 and conserved domain: PRK04612
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.69 E-value=3.6e-14 Score=105.59 Aligned_cols=335 Identities=15% Similarity=0.146 Sum_probs=179.3
Q ss_pred CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
Q ss_conf 001215788------89898999999999964288523658999999999999999999729897789886685387644
Q gi|254781091|r 4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW 77 (383)
Q Consensus 4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~ 77 (383)
T Consensus 40 ~~ylD~~sg~~~~~lGh~hp~v~~Ai~~Q~~~l~~~~~~~~----~~~~~~lae-~L~~~~~-~~~~v~f~~SGsEAvE~ 113 (408)
T PRK04612 40 REYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTSNVFF----SAPPLKLAE-ELVTASR-FAEKVFLCNSGTEANEA 113 (408)
T ss_pred CEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC----CHHHHHHHH-HHHHCCC-CCCEEEECCCHHHHHHH
T ss_conf 99999245077512258989999999999865257667522----658999999-9972268-87669971874689999
Q ss_pred HHHHHH-HHCCC-CCCCCEEEEC-CC-CCCCCCCCCCCCCCC---CCCCCCCCC-CC---CCCHHHHHHHHHHHCCCCCC
Q ss_conf 556544-21022-4566458733-32-122111222222222---222222222-21---11023455324431135653
Q gi|254781091|r 78 VLTPHF-YQGSH-KISIDSLYIS-AI-EHPAVYAGGHFPSHK---IHKIPVLSK-GI---VDIQALTDFLEQRNSTCGIP 146 (383)
Q Consensus 78 ~i~~~~-~~~~~-~~~~~~ii~s-~~-eH~s~~~~~~~~~~~---v~~v~~~~~-g~---i~~~~l~~~i~~~t~~~~~~ 146 (383)
T Consensus 114 AlKlAr~y~~~~G~~~~k~~ii~~~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~~d~~~le~~~~~~~----iA 189 (408)
T PRK04612 114 AIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGD----VA 189 (408)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCC----EE
T ss_conf 99999999873288777769999858525987674225678433468889988525436674999997156997----89
Q ss_pred EEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCCC--CCCC--CCCCEEEEECCCC-CCCCCCCHHH
Q ss_conf 2654034344433321----1235652034465334443233-65544--4443--3431068730543-3223432011
Q gi|254781091|r 147 MIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRIP--LSIE--EIKADFLIISSHK-LGAPVGAGAL 216 (383)
Q Consensus 147 LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~~--id~~--~~~~D~~~~S~hK-~~GP~G~G~L 216 (383)
T Consensus 190 AvivEPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~TGfGRtG~~fa~~~~~v~PDii~~g--Kglg~G~Pl~av 267 (408)
T PRK04612 190 AVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA--KALGGGFPIGAM 267 (408)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEE--HHHCCCCCEEEE
T ss_conf 999978678888306899999999999975694698501224788676203555128999989972--322388762899
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 01457420122122477421222222211222100122110010024565321012333344444321000122322110
Q gi|254781091|r 217 VFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAER 296 (383)
Q Consensus 217 ~~r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~ 296 (383)
T Consensus 268 ~~~~~i~~~~~--~~-~h~-~T~~g--npla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vRG 338 (408)
T PRK04612 268 LAGPKVAETMQ--FG-AHG-TTFGG--NPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEALNAEFGVFA-QIRG 338 (408)
T ss_pred EECHHHHHHCC--CC-CCC-CCCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHCCCCEE-EECC
T ss_conf 98688885146--89-978-88873--59999999999999986--66999999999999999999874079888-3220
Q ss_pred CCCEEEEEEC-CC--CHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 3652289857-99--99999999875896998711338864331014676288874765999907888999999999999
Q gi|254781091|r 297 ISNTCCFSIP-FL--KAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNAL 373 (383)
Q Consensus 297 ~~~i~~~~~~-~~--~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L 373 (383)
T Consensus 339 ~GLm~giel~~~~~~~~~~i~~~~~~~Gll~~~~-----------------g----~~~irl~PPL~it~~eide~l~~l 397 (408)
T PRK04612 339 RGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----------------G----PDVLRFVPALNLTDAELADGLARL 397 (408)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCEEECC-----------------C----CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 4469999954788626999999999789199317-----------------9----997999688338899999999999
Q ss_pred HHHHHHH
Q ss_conf 9999862
Q gi|254781091|r 374 QKIIRTS 380 (383)
Q Consensus 374 ~~iv~~~ 380 (383)
T Consensus 398 ~~al~~~ 404 (408)
T PRK04612 398 RLALAAY 404 (408)
T ss_pred HHHHHHH
T ss_conf 9999999