HHsearch alignment for GI: 254781091 and conserved domain: PRK05093
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed.
Probab=99.77 E-value=1.6e-16 Score=119.80 Aligned_cols=328 Identities=18% Similarity=0.184 Sum_probs=186.5
Q ss_pred CEECCCCCC-C-----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
Q ss_conf 001215788-8-----9898999999999964288523658999999999999999999729897789886685387644
Q gi|254781091|r 4 RVYLDWNAT-A-----PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW 77 (383)
Q Consensus 4 ~iYlD~aat-t-----p~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~ 77 (383)
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~I~~Ai~~Q~~~l~~~~~~~--~~~--~~~~lae-~L~~~~~--~drv~f~~SGSEAvE~ 112 (403)
T PRK05093 40 REYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVF--TNE--PALRLAK-KLVDATF--AERVFFANSGAEANEA 112 (403)
T ss_pred CEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCCCC--CCH--HHHHHHH-HHHHCCC--CCEEEEECCHHHHHHH
T ss_conf 9999955088850328997999999999987557775741--488--9999999-9864168--7759983867789999
Q ss_pred HHHHH-HHHCCCCCCC-CEEEECCC-CCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 55654-4210224566-45873332-122111222222222------------222222222211102345532443113
Q gi|254781091|r 78 VLTPH-FYQGSHKISI-DSLYISAI-EHPAVYAGGHFPSHK------------IHKIPVLSKGIVDIQALTDFLEQRNST 142 (383)
Q Consensus 78 ~i~~~-~~~~~~~~~~-~~ii~s~~-eH~s~~~~~~~~~~~------------v~~v~~~~~g~i~~~~l~~~i~~~t~~ 142 (383)
T Consensus 113 AiklAr~~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~~g~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~~~ia- 186 (403)
T PRK05093 113 ALKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-----NDLAALKAVIDDKTC- 186 (403)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCEECCC-----CCHHHHHHCCCCCEE-
T ss_conf 99999999997289987547777588688836877625880110277899977565563-----368888603377447-
Q ss_pred CCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCC--CCCEEEEECCCC-CCCCCC
Q ss_conf 56532654034344433321----1235652034465334443233-6554--444433--431068730543-322343
Q gi|254781091|r 143 CGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI--PLSIEE--IKADFLIISSHK-LGAPVG 212 (383)
Q Consensus 143 ~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~--~id~~~--~~~D~~~~S~hK-~~GP~G 212 (383)
T Consensus 187 ----AviiEPi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~g--KglggG~P 260 (403)
T PRK05093 187 ----AVVVEPIQGEGGVIPATPEFLQGLRELCDKHNALLIFDEVQTGMGRTGDLYAYMHYGVTPDILTSA--KALGGGFP 260 (403)
T ss_pred ----EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCC
T ss_conf ----999957667899758999999999986301683798601342688777752223689899889973--00158864
Q ss_pred CHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 20110145742012-21224774212222222112221001221100100245653210123333444443210001223
Q gi|254781091|r 213 AGALVFREDILLPS-PLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291 (383)
Q Consensus 213 ~G~L~~r~~~~~~~-p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~ 291 (383)
T Consensus 261 lsav~~~~~i~~~~~~~~~g~-----T~~g--~pla~aaala~L~~i~~--~~l~~~a~~~G~~l~~~L~~l~~~~~~i~ 331 (403)
T PRK05093 261 IGAMLTTAEIASHFKVGTHGS-----TYGG--NPLACAVAEAVFDIINT--PEVLEGVKAREQRFVDGLQKINEKYGVFS 331 (403)
T ss_pred EEEEEECHHHHHHCCCCCCCC-----CCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 279987288786507877265-----8985--89999999999999963--44999999999999999999986289826
Q ss_pred CCCCCCCCEEEEEECCC---CHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 22110365228985799---999999998758969987113388643310146762888747659999078889999999
Q gi|254781091|r 292 KDAERISNTCCFSIPFL---KAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDI 368 (383)
Q Consensus 292 ~~~~~~~~i~~~~~~~~---~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~ 368 (383)
T Consensus 332 ~-VRG~Glm~giel~~~~~~~a~~i~~~~~~~Gll~~~-----------------~g----~n~irl~PPL~it~~eid~ 389 (403)
T PRK05093 332 E-IRGKGLLIGAELNEQYKGRARDFLYAAAEEGVMVLV-----------------AG----PDVLRFAPSLVIPDADIDE 389 (403)
T ss_pred E-EEECCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEC-----------------CC----CCEEEEECCCCCCHHHHHH
T ss_conf 6-654126999996587521699999999968928952-----------------79----9979997884489999999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998623
Q gi|254781091|r 369 FLNALQKIIRTST 381 (383)
Q Consensus 369 l~~~L~~iv~~~~ 381 (383)
T Consensus 390 ~l~~l~~al~eV~ 402 (403)
T PRK05093 390 GLARFEKAVAKVV 402 (403)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985