HHsearch alignment for GI: 254781091 and conserved domain: PRK08960
>PRK08960 hypothetical protein; Provisional.
Probab=99.87 E-value=3.3e-20 Score=142.12 Aligned_cols=321 Identities=16% Similarity=0.117 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----C--CCHHHEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 989899999999996428852365899999999999999999972----9--8977898866853876445565442102
Q gi|254781091|r 14 PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFC----G--AKPDHVVFTSSATEAANWVLTPHFYQGS 87 (383)
Q Consensus 14 p~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~----g--~~~~ei~ft~~~T~a~~~~i~~~~~~~~ 87 (383)
T Consensus 45 ~~p~~i~~a~~~a~~~~~~---~Y~~~~G----~~~LReaia~~~~~~~g~~~~~d~I~vt~G~~~al~~~~~~l~---- 113 (387)
T PRK08960 45 TTAAPIVAAGQAALAAGHT---RYTAARG----LPALREAIAGFYAQRYGLDVDPERILVTPGGSGALLLASSLLV---- 113 (387)
T ss_pred CCCHHHHHHHHHHHHCCCC---CCCCCCC----HHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHC----
T ss_conf 8899999999999853899---8899877----2999999999999985899984328980866999999999956----
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC---
Q ss_conf 2456645873332122111222222222222222222--21110234553244311356532654034344433321---
Q gi|254781091|r 88 HKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSK--GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP--- 162 (383)
Q Consensus 88 ~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~--g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p--- 162 (383)
T Consensus 114 --~pGD~Vlv~~P~Yp~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~le~~~~~~~~-----~iil~nP~NPTG~v~s~~~ 186 (387)
T PRK08960 114 --DPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDTRYQLTPALVERHWDSDSV-----GALVASPANPTGTLLSRDE 186 (387)
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHCCCCCE-----EEEECCCCCCCCCCCCHHH
T ss_conf --999879981787655289999853744999757544778899999972787872-----9997689898863146899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCC-CCEEEEECCCCCCCCCC--CHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 12356520344653344432336---5544444334-31068730543322343--201101457420122122477421
Q gi|254781091|r 163 IKEIAQIVKEYQGILVVDAVQAA---GRIPLSIEEI-KADFLIISSHKLGAPVG--AGALVFREDILLPSPLLRGGDQEK 236 (383)
Q Consensus 163 i~~I~~~~~~~g~~~~vD~aqa~---g~~~id~~~~-~~D~~~~S~hK~~GP~G--~G~L~~r~~~~~~~p~~~Gg~~e~ 236 (383)
T Consensus 187 l~~l~~~a~~~~~~vI~DEiY~~l~~~~~~~s~~~~~~~~i~i~S~SK~~~~~G~RiG~~v~p~~~i~~~~~~~-----~ 261 (387)
T PRK08960 187 LAALSQALKARGGHLVVDEIYHGLTYGVDAASVLEVDDSAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLA-----Q 261 (387)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHH-----H
T ss_conf 99999987623977998446144125898653113678779995064325577630589998899999999999-----8
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EEEC--CCCHHH
Q ss_conf 22222221122210012211001-0024565321012333344444321000122322110365228-9857--999999
Q gi|254781091|r 237 GQRAGTENYAVIGGFAVAAQQMV-KDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCC-FSIP--FLKAEV 312 (383)
Q Consensus 237 ~~~~GT~~~~~i~~~~~al~~~~-~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~-~~~~--~~~~~~ 312 (383)
T Consensus 262 ~~~~~~~~~~Q~aa-~~al~~~~~~~~~~~~~~~~~rrd~l~~~l~~~-~~~~~~-~-P~--G~~y~w~~~~~~~~d~~~ 335 (387)
T PRK08960 262 NLYISASSMAQHAA-LACFEPETIAILEARRAEFQRRRDFLLPALREL-GFGIAV-E-PQ--GAFYLYADISAFGGDAFA 335 (387)
T ss_pred HCCCCCCCHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC-C-CC--EEEEEEEECCCCCCCHHH
T ss_conf 54377987999999-999621559999999999999999999999975-996045-8-98--666997888888999999
Q ss_pred HHH-HHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999-9875896998711338864331014676288874765999907888999999999999999986
Q gi|254781091|r 313 LQI-ALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIRT 379 (383)
Q Consensus 313 v~~-~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~ 379 (383)
T Consensus 336 ~~~~ll~~~gV~v~PG~~F--------------g~~~~~~~~Rls~~--~~~~~l~eal~RL~~~Lks 387 (387)
T PRK08960 336 FCRHFLETEHVAFTPGLDF--------------GRHQAGHHVRFAYT--QSLPRLQEAVERIARGLRS 387 (387)
T ss_pred HHHHHHHHCCEEEECCHHH--------------CCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_conf 9999998699999747220--------------89999998999976--9999999999999999667