HHsearch alignment for GI: 254781091 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=99.46 E-value=1.2e-12 Score=96.33 Aligned_cols=325 Identities=19% Similarity=0.174 Sum_probs=190.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC----CCHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHH
Q ss_conf 8889898999999999964288----523658---999999999999999999729897789886685387644556544
Q gi|254781091|r 11 ATAPLLEVVRQSFVKSLDFYGN----PSSVHK---EGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHF 83 (383)
Q Consensus 11 attp~~~~v~~a~~~~~~~~~n----~~s~h~---~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~ 83 (383)
T Consensus 21 al~PPiy~TSTF~F~s~eqGGnrFAG~e~Gy~YsRlgNPTv~~LE~---riA~LEg~EAa-vAt~SGMg-Ai~A~l~~~l 95 (392)
T TIGR01328 21 ALTPPIYQTSTFVFESAEQGGNRFAGEEEGYVYSRLGNPTVDLLER---RIAELEGAEAA-VATASGMG-AIAATLLSLL 95 (392)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHH---HHHHHHHHHHH-HHHHHHHH-HHHHHHHHHH
T ss_conf 7688513246788885740555366743662685267713778888---98754204677-88751289-9999999998
Q ss_pred HHCCCCCCCCEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCCCCCC
Q ss_conf 2102245664587333212211122222----222222222222221110234553244311356532654-03434443
Q gi|254781091|r 84 YQGSHKISIDSLYISAIEHPAVYAGGHF----PSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAV-MFVNNETG 158 (383)
Q Consensus 84 ~~~~~~~~~~~ii~s~~eH~s~~~~~~~----~~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~-~~~~n~tG 158 (383)
T Consensus 96 ------kAgDh~i~d~~lYGCTfall~~~ltkfgi~v~f~~~~-----~pee~~a~i~dnT~-----ivYfETPa-NPtm 158 (392)
T TIGR01328 96 ------KAGDHVISDETLYGCTFALLEDALTKFGIDVKFVDMA-----SPEEVKAAIKDNTK-----IVYFETPA-NPTM 158 (392)
T ss_pred ------HCCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEECCC-----CHHHHHHHCCCCCE-----EEEEECCC-CCCH
T ss_conf ------5287577438742014899873267737527983178-----77999984489977-----99986599-8752
Q ss_pred CCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC---CHHHHCCCCCCCCCCCC----C
Q ss_conf 3321123565203446-53344432336554444433431068730543322343---20110145742012212----2
Q gi|254781091|r 159 VIQPIKEIAQIVKEYQ-GILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVG---AGALVFREDILLPSPLL----R 230 (383)
Q Consensus 159 ~i~pi~~I~~~~~~~g-~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G---~G~L~~r~~~~~~~p~~----~ 230 (383)
T Consensus 159 ~liD~e~v~r~A~~~gG~kVivDNTfatP~lt~P~-alG~D~VVHSATKYigGHgDvVaG~~~G~~e~~q~iR~~g~KD~ 237 (392)
T TIGR01328 159 KLIDLELVVRVAHEKGGVKVIVDNTFATPYLTRPV-ALGVDVVVHSATKYIGGHGDVVAGVLIGDAELLQRIRLVGVKDM 237 (392)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHH-HCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCC
T ss_conf 57759999999975298289985662770013803-61877689424121376122112211077566744011110005
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC-------------CC
Q ss_conf 4774212222222112221001221100100245653210123333444443210001-223221-------------10
Q gi|254781091|r 231 GGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNII-IYGKDA-------------ER 296 (383)
Q Consensus 231 Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~-i~~~~~-------------~~ 296 (383)
T Consensus 238 tG~ViSPfd----AwL~l----RGLkTL~~RM----~rhsenA~kvAe~Lk~H-PaVe~V~YPG~~~hp~hdiaakQM~~ 304 (392)
T TIGR01328 238 TGAVISPFD----AWLVL----RGLKTLAVRM----KRHSENAEKVAEYLKEH-PAVEKVYYPGLEEHPDHDIAAKQMKK 304 (392)
T ss_pred CCCEECHHH----HHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHCC-CCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 665005578----99997----4366777888----77305389999985238-86021236887788874089998740
Q ss_pred CCCEEEEEECCCCH--HHHHHHHHHCCCEEEECHHHCCCCCCC-----CHH----HHHCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 36522898579999--999999875896998711338864331-----014----6762888747659999078889999
Q gi|254781091|r 297 ISNTCCFSIPFLKA--EVLQIALDLEGIAVSAGSACSSGKIKK-----NHV----LAAMGFDTSQGAVRVSCGDSTTQED 365 (383)
Q Consensus 297 ~~~i~~~~~~~~~~--~~v~~~l~~~gI~v~~G~~C~~~~~~~-----~~v----l~~~g~~~~~g~vRiS~~~~nT~~d 365 (383)
T Consensus 305 gGgm~~F~lKgg~a~~~k~~n~LkLIr~AVSLGdaEt-LIQHPAsMTHavvp~eeR~aaGI~--~gm~RlSvGl----Ed 377 (392)
T TIGR01328 305 GGGMLAFELKGGEADAKKLLNRLKLIRLAVSLGDAET-LIQHPASMTHAVVPKEEREAAGIS--EGMVRLSVGL----ED 377 (392)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCC--CCCEEEECCH----HH
T ss_conf 4872775432566899999875557665531277420-005876466789885678444766--4612230045----26
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254781091|r 366 IDIFLNALQKIIR 378 (383)
Q Consensus 366 Id~l~~~L~~iv~ 378 (383)
T Consensus 378 ~~d~~ADl~~aL~ 390 (392)
T TIGR01328 378 VDDVLADLKQALD 390 (392)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998521