>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

Probab=100.00 E-value=0 Score=607.46 Aligned_cols=344 Identities=34% Similarity=0.503 Sum_probs=322.1 Q ss_pred ECCCCCCCCCCHHHHHHHHHHH-HHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHH Q ss_conf 1215788898989999999999-642885236-58999999999999999999729897789886685387644556544 Q gi|254781091|r 6 YLDWNATAPLLEVVRQSFVKSL-DFYGNPSSV-HKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHF 83 (383) Q Consensus 6 YlD~aattp~~~~v~~a~~~~~-~~~~n~~s~-h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~ 83 (383) T Consensus 1 YLD~aATtp~~~~v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl~i~g~~ 80 (354) T TIGR03235 1 YLDHNATTPVDPEVAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNNIAILGLA 80 (354) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH T ss_conf 98886789899999999999998668797303128999999999999999999809996778996883799999999999 Q ss_pred HHCCCCCCCCEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC Q ss_conf 21022456645873332122111222222---222222222222211102345532443113565326540343444333 Q gi|254781091|r 84 YQGSHKISIDSLYISAIEHPAVYAGGHFP---SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVI 160 (383) Q Consensus 84 ~~~~~~~~~~~ii~s~~eH~s~~~~~~~~---~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i 160 (383) T Consensus 81 ~~~--~~~g~~ii~s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G~id~~~l~~~l~~~t-----~lvsi~~~nnetG~i 153 (354) T TIGR03235 81 RAH--ENKGKHIITTAIEHPAILEPARALERNGFTVTYLEVDESGRVSVEELADAIRDDT-----LLVSIMHVNNETGSL 153 (354) T ss_pred HHH--HCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCC-----EEEEEECCCCCCCCC T ss_conf 850--2699999981003044799999999649689995557898287799998726897-----799998875666763 Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCC---CCCCCCCCCCCCCC Q ss_conf 211235652034465334443233655444443343106873054332234320110145742---01221224774212 Q gi|254781091|r 161 QPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDIL---LPSPLLRGGDQEKG 237 (383) Q Consensus 161 ~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~---~~~p~~~Gg~~e~~ 237 (383) T Consensus 154 ~pi~~i~~~~~~~g~~~~vDa~Q~~g~~~id~~~~~~D~~s~S~HK~~GP~GiG~L~vr~~~~~~~~l~Pl~~GGgqe~g 233 (354) T TIGR03235 154 QPIREIAELCEAREVFFHSDAAQVVGKITVDLERDHIDLISLSGHKAYGPKGIGALYIRKRGKPKAPLAPIMFGGGQERG 233 (354) T ss_pred CCHHHHHHHHHCCCCEEEEECHHCCCCCCCCHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCC T ss_conf 88999988652256415625001158755577884997376310003488714999980466766664640368988687 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH Q ss_conf 22222211222100122110010024565321012333344444321000122322110365228985799999999998 Q gi|254781091|r 238 QRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIAL 317 (383) Q Consensus 238 ~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l 317 (383) T Consensus 234 ~r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s~~~~gi~~~~l~~~L 313 (354) T TIGR03235 234 LRPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILSFSFEGVNPEALIRNL 313 (354) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHH T ss_conf 46899659999999999999998289999999999999999997459965965882247588899997996999999986 Q ss_pred HHCCCEEEECHHHCCCCCCCCHHHHHCCCCC--CCCEEEEEE Q ss_conf 7589699871133886433101467628887--476599990 Q gi|254781091|r 318 DLEGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRVSC 357 (383) Q Consensus 318 ~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~--~~g~vRiS~ 357 (383) T Consensus 314 ~-~~iavstGSACssg~~~pS~vL~amg~~~~~a~~~iR~SF 354 (354) T TIGR03235 314 K-ADAAVSTGSACTSSKYTPSHVLQAMGLDTDRARTAIRFSW 354 (354) T ss_pred C-CCCEEEHHHHCCCCCCCCCHHHHHCCCCHHHHCCCEEEEC T ss_conf 3-9989982242069989989889865999799788779629

HHsearch alignment for GI: 254781091 and conserved domain: TIGR03235