HHsearch alignment for GI: 254781091 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=100.00 E-value=0 Score=578.12 Aligned_cols=359 Identities=26% Similarity=0.364 Sum_probs=321.6
Q ss_pred CCEECCCCCCCCCCHHHHHHHHHHHH-HCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHEEEECCHHHHHHHHH
Q ss_conf 70012157888989899999999996-428852-36589999999999999999997298-9778988668538764455
Q gi|254781091|r 3 KRVYLDWNATAPLLEVVRQSFVKSLD-FYGNPS-SVHKEGQKTRLYIEESRRIIADFCGA-KPDHVVFTSSATEAANWVL 79 (383)
Q Consensus 3 ~~iYlD~aattp~~~~v~~a~~~~~~-~~~n~~-s~h~~~~~~~~~~e~aR~~ia~~~g~-~~~ei~ft~~~T~a~~~~i 79 (383)
T Consensus 16 ~~iYlDnAatt~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iifts~~Te~~n~~~ 95 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA 95 (398)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 90886786326898999999999998634888751439999999999999999999709599897999587799999898
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 654421022456645873332122111222222----2222222222222111023455324431135653265403434
Q gi|254781091|r 80 TPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP----SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNN 155 (383)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~----~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n 155 (383)
T Consensus 96 ~~~~~~--~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~i~~~T-----~lVsi~~vsn 168 (398)
T TIGR03392 96 QSYARP--RLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRT-----RILALGQMSN 168 (398)
T ss_pred HHHHHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC-----CEEEEECCCC
T ss_conf 776887--239989899824400342389998876448527996147889879999998525787-----0899825556
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-
Q ss_conf 4433321123565203446533444323365544444334310687305433223432011014574201221224774-
Q gi|254781091|r 156 ETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQ- 234 (383)
Q Consensus 156 ~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~~Gg~~- 234 (383)
T Consensus 169 ~~G~i~pi~~I~~~~~~~g~~~~vDa~Q~~g~~~idv~~~~~D~~~~S~hKl~GP~G~G~Ly~~~~~~~~l~p~~~Gg~~ 248 (398)
T TIGR03392 169 VTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKM 248 (398)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHCCCCCCCCCC
T ss_conf 78885879999999986597478633411562033410267877998655356998418999841147437973579973
Q ss_pred --------------CCCCCCCCCCCCCCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --------------21222222211222100122110010-024565321012333344444321000122322110365
Q gi|254781091|r 235 --------------EKGQRAGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISN 299 (383)
Q Consensus 235 --------------e~~~~~GT~~~~~i~~~~~al~~~~~-~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~ 299 (383)
T Consensus 249 ~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~l~~-l~g~~~~~~~~---~~ 324 (398)
T TIGR03392 249 LSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFRCPG---SS 324 (398)
T ss_pred CCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCC---CC
T ss_conf 443347776445550211468854878999999999999649999999999999999999863-89964457999---96
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22898579999999999875896998711338864331014676288874765999907888999999999999999986
Q gi|254781091|r 300 TCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIRT 379 (383)
Q Consensus 300 i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~ 379 (383)
T Consensus 325 ~~~f~~~~~~~~~l~~~L~~~gi~v~~G~~ca~------~~l~a~g~~---g~iRvS~~~ynT~edId~li~aL~~~l~~ 395 (398)
T TIGR03392 325 LLAFDFAGVHHSDLAALLAESGIALRAGQHCAQ------PLMAALGVS---GTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCEEECCCCCCH------HHHHHHCCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 799987993999999999778979966866548------999986899---87999678888999999999999999998
Q ss_pred HC
Q ss_conf 23
Q gi|254781091|r 380 ST 381 (383)
Q Consensus 380 ~~ 381 (383)
T Consensus 396 l~ 397 (398)
T TIGR03392 396 LN 397 (398)
T ss_pred HC
T ss_conf 43