>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.

Probab=100.00 E-value=0 Score=645.13 Aligned_cols=370 Identities=34% Similarity=0.535 Sum_probs=346.1 Q ss_pred EECCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHEEEECCHHHHHHHHHHHH Q ss_conf 012157888989899999999996-428852365899999999999999999972989-778988668538764455654 Q gi|254781091|r 5 VYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAK-PDHVVFTSSATEAANWVLTPH 82 (383) Q Consensus 5 iYlD~aattp~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~-~~ei~ft~~~T~a~~~~i~~~ 82 (383) T Consensus 1 IYLD~aAtt~~~~~Vi~~~~~~~~~~~~Np~s~h~~~~~a~~~~e~aR~~ia~~l~a~~~~eIvFTsg~Tea~N~~~~gl 80 (382) T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH T ss_conf 94637356899999999999999866899632539999999999999999999759699786999387589999999999 Q ss_pred HHHCCCCCCCCEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf 421022456645873332122111222222---22222222222221110234553244311356532654034344433 Q gi|254781091|r 83 FYQGSHKISIDSLYISAIEHPAVYAGGHFP---SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGV 159 (383) Q Consensus 83 ~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~---~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~ 159 (383) T Consensus 81 ~~~~~~~~~~~~ii~s~~EH~sv~~~~~~l~~~G~~v~~~~~d~~G~~d~~~l~~~l~~~T-----~LVai~~anN~tG~ 155 (382) T TIGR03403 81 YFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKT-----ALVSVMWANNETGM 155 (382) T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC-----CEEEEECCCCCCCC T ss_conf 9998636899999995565153899999999659789997759998588999997601466-----06776314767777 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 32112356520344653344432336554444433431068730543322343201101457420122122477421222 Q gi|254781091|r 160 IQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQR 239 (383) Q Consensus 160 i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~~Gg~~e~~~~ 239 (383) T Consensus 156 i~pv~~I~~~~~~~g~~~~vDa~Q~~g~~pidv~~l~~D~l~~S~HK~~GP~GiG~L~ir~~~~l-~P~~~Gg~~~~~~r 234 (382) T TIGR03403 156 IFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGVEL-TPLFHGGEHMGGRR 234 (382) T ss_pred CCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCC T ss_conf 78799999999872987996713413564643232346524531010368883499998677765-87658987747612 Q ss_pred CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH Q ss_conf 22221122210012211001002456532101233334444432100012232211036522898579999999999875 Q gi|254781091|r 240 AGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDL 319 (383) Q Consensus 240 ~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~~ 319 (383) T Consensus 235 ~GT~n~~~i~~l~~A~~~~~~~~~~~~~~~~~L~~~l~~~L~~-i~~~~i~g~~~~r~p~~~~~~~~~i~~~~~~~~L~~ 313 (382) T TIGR03403 235 SGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNK 313 (382) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCHHHCCCCEEEEECCCCCHHHHHHHHCC T ss_conf 7986788999999999999998999999999999999999981-779467168332588579862799898999998470 Q ss_pred CCCEEEECHHHCCCCCCCCHHHHHCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 89699871133886433101467628887--476599990788899999999999999998623 Q gi|254781091|r 320 EGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRVSCGDSTTQEDIDIFLNALQKIIRTST 381 (383) Q Consensus 320 ~gI~v~~G~~C~~~~~~~~~vl~~~g~~~--~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~~~ 381 (383) T Consensus 314 ~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT~eeId~~i~~l~~~v~~lr 377 (382) T TIGR03403 314 AGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382) T ss_pred CCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9979975577289988758999971998544595799975899999999999999999999998

HHsearch alignment for GI: 254781091 and conserved domain: TIGR03403