HHsearch alignment for GI: 254781091 and conserved domain: TIGR03531
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.81 E-value=1.5e-07 Score=65.48 Aligned_cols=293 Identities=16% Similarity=0.169 Sum_probs=155.3
Q ss_pred HHHHCCCCH-HHEEEECCHH-HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf 999729897-7898866853-87644556544210224566458733321221112222222222222222---222111
Q gi|254781091|r 54 IADFCGAKP-DHVVFTSSAT-EAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVL---SKGIVD 128 (383)
Q Consensus 54 ia~~~g~~~-~ei~ft~~~T-~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~---~~g~i~ 128 (383)
T Consensus 114 ~lr~~G~~s~~~~~vvP~ATGMsL~LcL~alr~---~rp~a~yViw~RiDQKSc~K~i~~AGl~pivie~~l~gd~l~td 190 (444)
T TIGR03531 114 FLKLLGLRSVKSAIVVPLATGMSLSLCLSALRH---KRPKAKYVIWPRIDQKSCIKAISTAGLEPRVIETVLDGDRLTTD 190 (444)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECC
T ss_conf 999839853265799625345189999999850---18899889985355532688998659727997407518877469
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCCCCEEEE
Q ss_conf 02345532443113565326540343444-333211235652034465334443233655------44444334310687
Q gi|254781091|r 129 IQALTDFLEQRNSTCGIPMIAVMFVNNET-GVIQPIKEIAQIVKEYQGILVVDAVQAAGR------IPLSIEEIKADFLI 201 (383)
Q Consensus 129 ~~~l~~~i~~~t~~~~~~LVs~~~~~n~t-G~i~pi~~I~~~~~~~g~~~~vD~aqa~g~------~~id~~~~~~D~~~ 201 (383)
T Consensus 191 v~~ie~~i~~~g~~-~-i~cVlSTTScFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~i~~A~r~GRVDa~V 268 (444)
T TIGR03531 191 VEDIERAIEEIGPE-N-ILCVLSTTSCFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEKINKAIKVGRVDAVV 268 (444)
T ss_pred HHHHHHHHHHHCCC-C-EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999982867-6-479985365459999766999999999749983784203661799999999998649831999
Q ss_pred ECCCC-CCCCCCCHHHHCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30543-322343201101457-4201-22122477421222222211222100122110010024565321012333344
Q gi|254781091|r 202 ISSHK-LGAPVGAGALVFRED-ILLP-SPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQ 278 (383)
Q Consensus 202 ~S~hK-~~GP~G~G~L~~r~~-~~~~-~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~ 278 (383)
T Consensus 269 QStDKNflVPVGGaII~s~d~~~i~~is~~YPG------RAS~sp~lDlfI---TLLslG~~gy~~Ll~eRke~~~~l~~ 339 (444)
T TIGR03531 269 SSTDKNFMVPVGGAIIYSFDENFIQEISKSYPG------RASASPSLDVLI---TLLSMGSKGYLELLKERKEMYKYLKE 339 (444)
T ss_pred EECCCCEEEECCCEEEEECCHHHHHHHHHCCCC------CCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 706866254348748971888999999841899------777740799999---99997488899999999999999999
Q ss_pred HHHHHHH--CCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHCCCE----EEE--------------CHHHCCCCC
Q ss_conf 4443210--001223221103652289857---99999999998758969----987--------------113388643
Q gi|254781091|r 279 ELKKLIP--NIIIYGKDAERISNTCCFSIP---FLKAEVLQIALDLEGIA----VSA--------------GSACSSGKI 335 (383)
Q Consensus 279 ~l~~~~~--~~~i~~~~~~~~~~i~~~~~~---~~~~~~v~~~l~~~gI~----v~~--------------G~~C~~~~~ 335 (383)
T Consensus 340 ~L~~~a~~~gerlL~t~~N--~IS~aitl~~l~~~~~t~lGsmLf~r~VsG~RVV~~~~~k~i~g~~F~~~gsh~~~--- 414 (444)
T TIGR03531 340 LLQKLAERHGERLLDVPEN--PISSAMTLNTLRPKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSN--- 414 (444)
T ss_pred HHHHHHHHHCCEECCCCCC--CEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCEEECCEEEECCCCCCCC---
T ss_conf 9999999829872148999--50577873667876789999999736887561775899738878775067777677---
Q ss_pred CCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 310146762888747659999078889999999999999999
Q gi|254781091|r 336 KKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKII 377 (383)
Q Consensus 336 ~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv 377 (383)
T Consensus 415 yp~~------------Ylt~aaaIG~~~~dvd~f~~rLdk~l 444 (444)
T TIGR03531 415 YPCP------------YITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CCCH------------HHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 8525------------79988881885899999999986149