HHsearch alignment for GI: 254781091 and conserved domain: TIGR03531

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.81  E-value=1.5e-07  Score=65.48  Aligned_cols=293  Identities=16%  Similarity=0.169  Sum_probs=155.3

Q ss_pred             HHHHCCCCH-HHEEEECCHH-HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf             999729897-7898866853-87644556544210224566458733321221112222222222222222---222111
Q gi|254781091|r   54 IADFCGAKP-DHVVFTSSAT-EAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVL---SKGIVD  128 (383)
Q Consensus        54 ia~~~g~~~-~ei~ft~~~T-~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~---~~g~i~  128 (383)
T Consensus       114 ~lr~~G~~s~~~~~vvP~ATGMsL~LcL~alr~---~rp~a~yViw~RiDQKSc~K~i~~AGl~pivie~~l~gd~l~td  190 (444)
T TIGR03531       114 FLKLLGLRSVKSAIVVPLATGMSLSLCLSALRH---KRPKAKYVIWPRIDQKSCIKAISTAGLEPRVIETVLDGDRLTTD  190 (444)
T ss_pred             HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECC
T ss_conf             999839853265799625345189999999850---18899889985355532688998659727997407518877469


Q ss_pred             CHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCCCCEEEE
Q ss_conf             02345532443113565326540343444-333211235652034465334443233655------44444334310687
Q gi|254781091|r  129 IQALTDFLEQRNSTCGIPMIAVMFVNNET-GVIQPIKEIAQIVKEYQGILVVDAVQAAGR------IPLSIEEIKADFLI  201 (383)
Q Consensus       129 ~~~l~~~i~~~t~~~~~~LVs~~~~~n~t-G~i~pi~~I~~~~~~~g~~~~vD~aqa~g~------~~id~~~~~~D~~~  201 (383)
T Consensus       191 v~~ie~~i~~~g~~-~-i~cVlSTTScFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~i~~A~r~GRVDa~V  268 (444)
T TIGR03531       191 VEDIERAIEEIGPE-N-ILCVLSTTSCFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEKINKAIKVGRVDAVV  268 (444)
T ss_pred             HHHHHHHHHHHCCC-C-EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999982867-6-479985365459999766999999999749983784203661799999999998649831999


Q ss_pred             ECCCC-CCCCCCCHHHHCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             30543-322343201101457-4201-22122477421222222211222100122110010024565321012333344
Q gi|254781091|r  202 ISSHK-LGAPVGAGALVFRED-ILLP-SPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQ  278 (383)
Q Consensus       202 ~S~hK-~~GP~G~G~L~~r~~-~~~~-~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~  278 (383)
T Consensus       269 QStDKNflVPVGGaII~s~d~~~i~~is~~YPG------RAS~sp~lDlfI---TLLslG~~gy~~Ll~eRke~~~~l~~  339 (444)
T TIGR03531       269 SSTDKNFMVPVGGAIIYSFDENFIQEISKSYPG------RASASPSLDVLI---TLLSMGSKGYLELLKERKEMYKYLKE  339 (444)
T ss_pred             EECCCCEEEECCCEEEEECCHHHHHHHHHCCCC------CCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             706866254348748971888999999841899------777740799999---99997488899999999999999999


Q ss_pred             HHHHHHH--CCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHCCCE----EEE--------------CHHHCCCCC
Q ss_conf             4443210--001223221103652289857---99999999998758969----987--------------113388643
Q gi|254781091|r  279 ELKKLIP--NIIIYGKDAERISNTCCFSIP---FLKAEVLQIALDLEGIA----VSA--------------GSACSSGKI  335 (383)
Q Consensus       279 ~l~~~~~--~~~i~~~~~~~~~~i~~~~~~---~~~~~~v~~~l~~~gI~----v~~--------------G~~C~~~~~  335 (383)
T Consensus       340 ~L~~~a~~~gerlL~t~~N--~IS~aitl~~l~~~~~t~lGsmLf~r~VsG~RVV~~~~~k~i~g~~F~~~gsh~~~---  414 (444)
T TIGR03531       340 LLQKLAERHGERLLDVPEN--PISSAMTLNTLRPKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSN---  414 (444)
T ss_pred             HHHHHHHHHCCEECCCCCC--CEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCEEECCEEEECCCCCCCC---
T ss_conf             9999999829872148999--50577873667876789999999736887561775899738878775067777677---


Q ss_pred             CCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             310146762888747659999078889999999999999999
Q gi|254781091|r  336 KKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKII  377 (383)
Q Consensus       336 ~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv  377 (383)
T Consensus       415 yp~~------------Ylt~aaaIG~~~~dvd~f~~rLdk~l  444 (444)
T TIGR03531       415 YPCP------------YITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             CCCH------------HHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             8525------------79988881885899999999986149