HHsearch alignment for GI: 254781091 and conserved domain: TIGR03539
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.76 E-value=6.5e-17 Score=122.20 Aligned_cols=298 Identities=19% Similarity=0.178 Sum_probs=167.5
Q ss_pred CCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHC----C---CCHHHEEEECCHHHHHHHHHHHHH
Q ss_conf 89898999999999964--28852365899999999999999999972----9---897789886685387644556544
Q gi|254781091|r 13 APLLEVVRQSFVKSLDF--YGNPSSVHKEGQKTRLYIEESRRIIADFC----G---AKPDHVVFTSSATEAANWVLTPHF 83 (383)
Q Consensus 13 tp~~~~v~~a~~~~~~~--~~n~~s~h~~~~~~~~~~e~aR~~ia~~~----g---~~~~ei~ft~~~T~a~~~~i~~~~ 83 (383)
T Consensus 33 ~p~p~~i~~a~~~a~~~~~Y~~~~G-----------~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~l~~~l~ 101 (357)
T TIGR03539 33 DPVPPLIRAALAAAADAPGYPQTWG-----------TPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG 101 (357)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 9989999999997124799899847-----------79999999999999719997995759986887999999999970
Q ss_pred HHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf 2102245664587333212211122222222222222222221110234553244311356532654034344433321-
Q gi|254781091|r 84 YQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP- 162 (383)
Q Consensus 84 ~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p- 162 (383)
T Consensus 102 -----~~pGD~Vli~~P~y~~y~~~~~~~g~~~v--~--------~d~~~~~~~~~~-----k~i~l~~P~NPTG~v~s~ 161 (357)
T TIGR03539 102 -----LGPGDTVVIPELAYPTYEVGALLAGATPV--A--------ADDPTELDPVGP-----DLIWLNSPGNPTGRVLSV 161 (357)
T ss_pred -----CCCCCEEEECCCCCCCHHHHHHHCCCEEE--E--------CCCHHHCCCCCC-----EEEEECCCCCCCHHCCCH
T ss_conf -----79999899788877008999998599898--2--------388666797785-----499989998962320828
Q ss_pred --HHHHHHHHCCCCCCCCCCCCCCC----CCCC--CCCCCCCCE----EEEECCCCCCCCCC--CHHHHCCCCCCCCCCC
Q ss_conf --12356520344653344432336----5544--444334310----68730543322343--2011014574201221
Q gi|254781091|r 163 --IKEIAQIVKEYQGILVVDAVQAA----GRIP--LSIEEIKAD----FLIISSHKLGAPVG--AGALVFREDILLPSPL 228 (383)
Q Consensus 163 --i~~I~~~~~~~g~~~~vD~aqa~----g~~~--id~~~~~~D----~~~~S~hK~~GP~G--~G~L~~r~~~~~~~p~ 228 (383)
T Consensus 162 ~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~li~~l~~ 241 (357)
T TIGR03539 162 DELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLT 241 (357)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 89999987320555899523324765358988430286453767576799961531004556128999679999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 22477421222222211222100122110010024565321012333344444321000122322110365228985799
Q gi|254781091|r 229 LRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFL 308 (383)
Q Consensus 229 ~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 308 (383)
T Consensus 242 ~~----~-~~~~~~~~~-~q~a~~~al~~-~~~~~~~~~~~~~rr~~l~~~L~~--~g~~~~~--p~--g~~y~~~~~~~ 308 (357)
T TIGR03539 242 VR----K-HAGLMVPAP-VQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK--AGFRIDH--SE--AGLYLWATRGE 308 (357)
T ss_pred HH----H-HCCCCCCHH-HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH--CCCEECC--CC--EEEEEEEECCC
T ss_conf 99----8-567778899-99999999569-278999999999999999999985--7977626--88--06999875899
Q ss_pred CHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 999999998758969987113388643310146762888747659999078889999999999
Q gi|254781091|r 309 KAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLN 371 (383)
Q Consensus 309 ~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~ 371 (383)
T Consensus 309 ~~~~~~~~l~e~gV~v~PG~~Fg~---------------~g~~~vRis~~--~~~e~l~eal~ 354 (357)
T TIGR03539 309 DAWDTVDRLAELGILVAPGDFYGP---------------AGSQHVRVALT--ATDERIAAAVA 354 (357)
T ss_pred CHHHHHHHHHHCCEEEECCCCCCC---------------CCCCEEEEEEC--CCHHHHHHHHH
T ss_conf 999999999969989947874478---------------99997999972--99999999998