HHsearch alignment for GI: 254781091 and conserved domain: TIGR03539

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.76  E-value=6.5e-17  Score=122.20  Aligned_cols=298  Identities=19%  Similarity=0.178  Sum_probs=167.5

Q ss_pred             CCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHC----C---CCHHHEEEECCHHHHHHHHHHHHH
Q ss_conf             89898999999999964--28852365899999999999999999972----9---897789886685387644556544
Q gi|254781091|r   13 APLLEVVRQSFVKSLDF--YGNPSSVHKEGQKTRLYIEESRRIIADFC----G---AKPDHVVFTSSATEAANWVLTPHF   83 (383)
Q Consensus        13 tp~~~~v~~a~~~~~~~--~~n~~s~h~~~~~~~~~~e~aR~~ia~~~----g---~~~~ei~ft~~~T~a~~~~i~~~~   83 (383)
T Consensus        33 ~p~p~~i~~a~~~a~~~~~Y~~~~G-----------~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~l~~~l~  101 (357)
T TIGR03539        33 DPVPPLIRAALAAAADAPGYPQTWG-----------TPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG  101 (357)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             9989999999997124799899847-----------79999999999999719997995759986887999999999970


Q ss_pred             HHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf             2102245664587333212211122222222222222222221110234553244311356532654034344433321-
Q gi|254781091|r   84 YQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-  162 (383)
Q Consensus        84 ~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p-  162 (383)
T Consensus       102 -----~~pGD~Vli~~P~y~~y~~~~~~~g~~~v--~--------~d~~~~~~~~~~-----k~i~l~~P~NPTG~v~s~  161 (357)
T TIGR03539       102 -----LGPGDTVVIPELAYPTYEVGALLAGATPV--A--------ADDPTELDPVGP-----DLIWLNSPGNPTGRVLSV  161 (357)
T ss_pred             -----CCCCCEEEECCCCCCCHHHHHHHCCCEEE--E--------CCCHHHCCCCCC-----EEEEECCCCCCCHHCCCH
T ss_conf             -----79999899788877008999998599898--2--------388666797785-----499989998962320828


Q ss_pred             --HHHHHHHHCCCCCCCCCCCCCCC----CCCC--CCCCCCCCE----EEEECCCCCCCCCC--CHHHHCCCCCCCCCCC
Q ss_conf             --12356520344653344432336----5544--444334310----68730543322343--2011014574201221
Q gi|254781091|r  163 --IKEIAQIVKEYQGILVVDAVQAA----GRIP--LSIEEIKAD----FLIISSHKLGAPVG--AGALVFREDILLPSPL  228 (383)
Q Consensus       163 --i~~I~~~~~~~g~~~~vD~aqa~----g~~~--id~~~~~~D----~~~~S~hK~~GP~G--~G~L~~r~~~~~~~p~  228 (383)
T Consensus       162 ~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~li~~l~~  241 (357)
T TIGR03539       162 DELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLT  241 (357)
T ss_pred             HHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf             89999987320555899523324765358988430286453767576799961531004556128999679999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             22477421222222211222100122110010024565321012333344444321000122322110365228985799
Q gi|254781091|r  229 LRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFL  308 (383)
Q Consensus       229 ~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~  308 (383)
T Consensus       242 ~~----~-~~~~~~~~~-~q~a~~~al~~-~~~~~~~~~~~~~rr~~l~~~L~~--~g~~~~~--p~--g~~y~~~~~~~  308 (357)
T TIGR03539       242 VR----K-HAGLMVPAP-VQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK--AGFRIDH--SE--AGLYLWATRGE  308 (357)
T ss_pred             HH----H-HCCCCCCHH-HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH--CCCEECC--CC--EEEEEEEECCC
T ss_conf             99----8-567778899-99999999569-278999999999999999999985--7977626--88--06999875899


Q ss_pred             CHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             999999998758969987113388643310146762888747659999078889999999999
Q gi|254781091|r  309 KAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLN  371 (383)
Q Consensus       309 ~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~  371 (383)
T Consensus       309 ~~~~~~~~l~e~gV~v~PG~~Fg~---------------~g~~~vRis~~--~~~e~l~eal~  354 (357)
T TIGR03539       309 DAWDTVDRLAELGILVAPGDFYGP---------------AGSQHVRVALT--ATDERIAAAVA  354 (357)
T ss_pred             CHHHHHHHHHHCCEEEECCCCCCC---------------CCCCEEEEEEC--CCHHHHHHHHH
T ss_conf             999999999969989947874478---------------99997999972--99999999998