HHsearch alignment for GI: 254781091 and conserved domain: cd01494
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.96 E-value=3.4e-30 Score=202.68 Aligned_cols=163 Identities=29% Similarity=0.372 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCC-
Q ss_conf 99999999997298977898866853876445565442102245664587333212211122-2222222222222222-
Q gi|254781091|r 47 IEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAG-GHFPSHKIHKIPVLSK- 124 (383)
Q Consensus 47 ~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~-~~~~~~~v~~v~~~~~- 124 (383)
T Consensus 2 ~~e~e~~la~~~~~~~~~~i~~~sgt~A~~~~~~~l~------~~gd~vi~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~ 75 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL------GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 8999999999848998989995669999999999972------7999999826843756899998659877872347787
Q ss_pred -CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEE
Q ss_conf -211102345532443113565326540343444333211235652034465334443233655444---4433431068
Q gi|254781091|r 125 -GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPL---SIEEIKADFL 200 (383)
Q Consensus 125 -g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~i---d~~~~~~D~~ 200 (383)
T Consensus 76 ~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~g~~~~l~~I~~la~~~gi~livD~a~~~g~~~~~~~~~~~~~~D~~ 151 (170)
T cd01494 76 YGGLDVAILEELKAKP----NVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVV 151 (170)
T ss_pred CCCCCHHHHHHHHCCC----CCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCCCCCCEEE
T ss_conf 5546899999985599----963688774014787320199997356207969999468432160666667777898599
Q ss_pred EECCCCCCCCCCCHHHHCC
Q ss_conf 7305433223432011014
Q gi|254781091|r 201 IISSHKLGAPVGAGALVFR 219 (383)
Q Consensus 201 ~~S~hK~~GP~G~G~L~~r 219 (383)
T Consensus 152 ~~s~hK~lg~~g~g~l~~~ 170 (170)
T cd01494 152 TFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EECCCCCCCCCCEEEEEEC
T ss_conf 9898666789857999989