HHsearch alignment for GI: 254781091 and conserved domain: pfam01276
>pfam01276 OKR_DC_1 Orn/Lys/Arg decarboxylase, major domain.
Probab=99.83 E-value=9.7e-20 Score=139.30 Aligned_cols=268 Identities=16% Similarity=0.127 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999999999999729897789886685387644556544210224566458733321221112222222222222222--
Q gi|254781091|r 45 LYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVL-- 122 (383)
Q Consensus 45 ~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~-- 122 (383)
T Consensus 66 g~I~eAq~~aA~~fga~~t-~flvnGsT~g~~a~i~a~~------~~Gd~Vlv~RN~HkSv~~al~l~g~~Pvyl~p~~~ 138 (417)
T pfam01276 66 GPIKEAQKYAARVFGADKS-YFVVNGTSGANKTVGMAVC------TPGDTVLIDRNCHKSIHHALMMSGATPVYLEPTRN 138 (417)
T ss_pred HHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHHC------CCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 3999999999998399936-9984683099999999743------89998997164189999999986985899536424
Q ss_pred CCCC--------CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCC--C
Q ss_conf 2221--------110234553244311356532654034344433321123565203446533444323365--544--4
Q gi|254781091|r 123 SKGI--------VDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG--RIP--L 190 (383)
Q Consensus 123 ~~g~--------i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g--~~~--i 190 (383)
T Consensus 139 ~~gi~~~i~~~~~~~e~~~~~l~~~p~~k~~~~v~lt~PtY-~G~~~di~~i~~~~h~~~~~llvDEAhGah~~F~plp~ 217 (417)
T pfam01276 139 AYGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNGTY-DGTIYNAKEIVDTLGHLSDYILFDSAWVGYEQFIPIYA 217 (417)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC-CEEEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCH
T ss_conf 34661588825459999999998587656850899989998-70652899999998633987999788752024687833
Q ss_pred CCCCCCCE-------EEEECCCC-CCCCCCCHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-C
Q ss_conf 44334310-------68730543-3223432011014574-2012212247742122222221122210012211001-0
Q gi|254781091|r 191 SIEEIKAD-------FLIISSHK-LGAPVGAGALVFREDI-LLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMV-K 260 (383)
Q Consensus 191 d~~~~~~D-------~~~~S~hK-~~GP~G~G~L~~r~~~-~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~-~ 260 (383)
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~altQ~s~Lh~~~~~~~~~~~~~~---~l~~~qTTSPsY~lmASLD~ar~~m~~~ 294 (417)
T pfam01276 218 DASPMGGDNVNDPGIIVTQSVHKLLAAFSQASQIHKKDSHIVNHKRFNE---AFMMHTSTSPFYPIVASLDVAAAMMEGN 294 (417)
T ss_pred HHHHCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHCCCCCCCHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4665678866677227986111135430434321216787789999999---9997738874899999999999997535
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCC------------C--------------CCCCEEEEEEC-----
Q ss_conf 024565321012333344444321000---1223221------------1--------------03652289857-----
Q gi|254781091|r 261 DIQKRSSRVFAIRDYLEQELKKLIPNI---IIYGKDA------------E--------------RISNTCCFSIP----- 306 (383)
Q Consensus 261 ~~~~~~~~~~~L~~~l~~~l~~~~~~~---~i~~~~~------------~--------------~~~~i~~~~~~----- 306 (383)
T Consensus 295 ~G~~l~~~~i~~a~~~R~~i~~l-~~~~~~~~~~~~~i~~~~~~~~~~~~~~hg~~~~~~~~~~lDptKltI~t~g~~~~ 373 (417)
T pfam01276 295 SGRRLWQESLERAIEFRKEIKTL-NDGEFFRPWNPEIVDGKECWPFHPGEKWHGFEGYDDNQYFLDPIKLTILTPGIDET 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 54999999999999999999864-57852203671004771010247653213555555554257785699980786877
Q ss_pred ------CCCHHHHHHHHHHCCCEE
Q ss_conf ------999999999987589699
Q gi|254781091|r 307 ------FLKAEVLQIALDLEGIAV 324 (383)
Q Consensus 307 ------~~~~~~v~~~l~~~gI~v 324 (383)
T Consensus 374 g~~~~~GisG~~v~~~Lre~gI~~ 397 (417)
T pfam01276 374 GEYEEFGVPATIVAKYLREHGIVP 397 (417)
T ss_pred CCHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 633323977999999999869889