HHsearch alignment for GI: 254781091 and conserved domain: pfam03841
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=99.70 E-value=5.6e-16 Score=116.53 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=166.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 57888989899999999996428852-36589999999999999999997298977898866853876445565442102
Q gi|254781091|r 9 WNATAPLLEVVRQSFVKSLDFYGNPS-SVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGS 87 (383)
Q Consensus 9 ~aattp~~~~v~~a~~~~~~~~~n~~-s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~ 87 (383)
T Consensus 12 nLGRa~l~~~a~~a~~~~~~~y~nLE~dl~~-g~RG-~R~~~~~~ll~~ltgaE~a--~vVNnnAaAv~L~l~~la---- 83 (367)
T pfam03841 12 NLGRALLSEEAVEAAKEAARHYSNLEYDLES-GKRG-SRDSHLEELLCELTGAEDA--LVVNNNAAAVLLVLNTLA---- 83 (367)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-CCCC-CHHHHHHHHHHHHHCCCEE--EEECCCHHHHHHHHHHHH----
T ss_conf 7877789999999999986177203666741-7766-3578999999986398659--998783899999999875----
Q ss_pred CCCCCCEEEECCCCC----CCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC--CCC
Q ss_conf 245664587333212----211122--222222222222222221110234553244311356532654034344--433
Q gi|254781091|r 88 HKISIDSLYISAIEH----PAVYAG--GHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNE--TGV 159 (383)
Q Consensus 88 ~~~~~~~ii~s~~eH----~s~~~~--~~~~~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~--tG~ 159 (383)
T Consensus 84 ---~g~evivSRGelVeiGgsfRiPdim~~sGa~LvEVG--tTNrT~l~DYe~AI~e~Ta-----~llkVH~SN~~i~GF 153 (367)
T pfam03841 84 ---QGKEVIISRGELVEIGGSFRIPDIMKQSGARLVEVG--TTNRTHLKDYEQAINENTA-----LLMKVHTSNYRIQGF 153 (367)
T ss_pred ---CCCCEEEECCEEECCCCCCCCHHHHHHCCCEEEEEC--CCCCCCHHHHHHHCCCCCE-----EEEEEECCCCEECCC
T ss_conf ---489057755545123875440899996597899825--6688898999987082461-----899994265122374
Q ss_pred C--CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCEEEEECCCC-CCCCCCCHHHHCCCCC
Q ss_conf 3--211235652034465334443233655444443--------------3431068730543-3223432011014574
Q gi|254781091|r 160 I--QPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIE--------------EIKADFLIISSHK-LGAPVGAGALVFREDI 222 (383)
Q Consensus 160 i--~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~--------------~~~~D~~~~S~hK-~~GP~G~G~L~~r~~~ 222 (383)
T Consensus 154 t~~v~~~el~~la~~~~ip~i~DlGS--G~l-~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQ-AGII~Gkk~l 229 (367)
T pfam03841 154 TKEVSLAELVALGKEHGLPVYYDLGS--GSL-VDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQ-AGIIVGKKEL 229 (367)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCC--CCE-ECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC-CCEEEECHHH
T ss_conf 67799999999998769967997586--631-1220017999998999997399889986764568985-3247645999
Q ss_pred CC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC----------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20---122122477421222222211222100122110010----------------02456532101233334444432
Q gi|254781091|r 223 LL---PSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVK----------------DIQKRSSRVFAIRDYLEQELKKL 283 (383)
Q Consensus 223 ~~---~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~----------------~~~~~~~~~~~L~~~l~~~l~~~ 283 (383)
T Consensus 230 I~~ikknPL~------RAlRvD---KltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~l~~~~~~~ 300 (367)
T pfam03841 230 IERLKKNPLK------RALRVD---KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARLGSG 300 (367)
T ss_pred HHHHHHCCHH------HHHCCC---HHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9974647444------544458---8999999999999849000001165899863999999999999999976751688
Q ss_pred HHCCCCC------C--C-CCCCCCCE-EEEEECCCCHHHHHHHHHHCCC
Q ss_conf 1000122------3--2-21103652-2898579999999999875896
Q gi|254781091|r 284 IPNIIIY------G--K-DAERISNT-CCFSIPFLKAEVLQIALDLEGI 322 (383)
Q Consensus 284 ~~~~~i~------~--~-~~~~~~~i-~~~~~~~~~~~~v~~~l~~~gI 322 (383)
T Consensus 301 -~~~~v~~~~s~vGgGslP~~~lpS~al~i~~~~~~~~~l~~~LR~~~~ 348 (367)
T pfam03841 301 -AEVSVEPSFSQIGGGSLPVKELPSAAVTIRPENMALDALKLRLRLLDP 348 (367)
T ss_pred -CEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf -259999777743788787776887799985798999999999737999