HHsearch alignment for GI: 254781091 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=98.95 E-value=5.5e-08 Score=68.09 Aligned_cols=295 Identities=13% Similarity=0.121 Sum_probs=154.4
Q ss_pred HHHHCCCCH-HHEEEECCHHHHHHH-HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf 999729897-789886685387644-556544210224566458733321221112222222222222222---222111
Q gi|254781091|r 54 IADFCGAKP-DHVVFTSSATEAANW-VLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVL---SKGIVD 128 (383)
Q Consensus 54 ia~~~g~~~-~ei~ft~~~T~a~~~-~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~---~~g~i~ 128 (383)
T Consensus 65 ~lr~~G~~s~~~~~vvP~aTG-Msl~~~L~~~~---~rp~a~yViw~RiDqKSc~Kai~~AGl~p~vVe~~~~~d~l~Td 140 (389)
T pfam05889 65 FLKLLGLREVKNCFVVPLATG-MSLLCMLSWRR---KRPKAKYVIWPRIDQKSSIKAAERAGFEPRLVETVLDGDYLITD 140 (389)
T ss_pred HHHHCCCCCCCCEEEECCCCC-HHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECC
T ss_conf 999829743165789504104-79999999985---58899789986355522689999769714887525228824358
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCCCCEEEE
Q ss_conf 023455324431135653265403434443332-11235652034465334443233655------44444334310687
Q gi|254781091|r 129 IQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQ-PIKEIAQIVKEYQGILVVDAVQAAGR------IPLSIEEIKADFLI 201 (383)
Q Consensus 129 ~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~-pi~~I~~~~~~~g~~~~vD~aqa~g~------~~id~~~~~~D~~~ 201 (383)
T Consensus 141 ~~~ie~~i~~~g~--~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~i~~a~r~GRVDa~V 218 (389)
T pfam05889 141 VNDVETIIEEKGE--EVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRLIAAAHECGRVDAVV 218 (389)
T ss_pred HHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999998387--76689984466569999667999999999749974784303661799999999998638821899
Q ss_pred ECCCC-CCCCCCCHHHHCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30543-3223432011014574-20-122122477421222222211222100122110010024565321012333344
Q gi|254781091|r 202 ISSHK-LGAPVGAGALVFREDI-LL-PSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQ 278 (383)
Q Consensus 202 ~S~hK-~~GP~G~G~L~~r~~~-~~-~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~ 278 (383)
T Consensus 219 QStDKNflVPVGGaIIas~d~~~i~~is~~YPG------RAS~sp~lDlf---ITLLslG~~gy~~Ll~eRke~~~~l~e 289 (389)
T pfam05889 219 QSLDKNFIVPVGGAIIAAFDESFIQEISEEYPG------RASARPSKDKL---ITLLSLGCKAYLALMKEQKEMFPLLRE 289 (389)
T ss_pred EECCCCEEEECCCEEEEECCHHHHHHHHHCCCC------CCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 706866255348748970888999999841899------77774079999---999997488899999999999999999
Q ss_pred HHHHHHH--CCCCCCCCCCCCCCEEEEEECC------CCHHHHHHHHHHCCCE----EEE---CHHHCCCCCCCCHHHHH
Q ss_conf 4443210--0012232211036522898579------9999999998758969----987---11338864331014676
Q gi|254781091|r 279 ELKKLIP--NIIIYGKDAERISNTCCFSIPF------LKAEVLQIALDLEGIA----VSA---GSACSSGKIKKNHVLAA 343 (383)
Q Consensus 279 ~l~~~~~--~~~i~~~~~~~~~~i~~~~~~~------~~~~~v~~~l~~~gI~----v~~---G~~C~~~~~~~~~vl~~ 343 (383)
T Consensus 290 ~L~~~a~~~ge~lL~t~~--N~IS~aitl~~l~~~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~~~~-~~~y~~~Y--- 363 (389)
T pfam05889 290 LLKDLAEEVGEQLLDVPH--NPISSAMTLETLDEISKKGRTDLGSELFSRRVTGARVVRSSDPFGTIE-GCEYHGRY--- 363 (389)
T ss_pred HHHHHHHHHCCEEECCCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCEEE-CCCCCCHH---
T ss_conf 999999982987513899--951688873455666755499999999756787651665688853461-67688367---
Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 28887476599990788899999999999999998
Q gi|254781091|r 344 MGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378 (383)
Q Consensus 344 ~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv~ 378 (383)
T Consensus 364 ---------lt~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 364 ---------LNIASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred ---------HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf ---------89998708868999999999998529