>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. Length = 353

Score = 226 bits (577), Expect = 1e-59 Identities = 129/367 (35%), Positives = 189/367 (51%), Gaps = 31/367 (8%) Query: 6 YLDWNATAPLL----EVVRQSFVKSLDFYGNPSSV-HKEGQKTRLYIEESRRIIADFCGA 60 YLD NAT P+ E + L+ +GNPSS H+ G + +E +R+ +A+ GA Sbjct: 1 YLDHNATTPIDPAVAEAMLPWL---LEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGA 57 Query: 61 KPDHVVFTSSATEAANWV---LTPHFYQGSHKISIDSLYISAIEHPAVYAGGHF---PSH 114 + V+FTS ATE+ N L Q K + SAIEHPAV Sbjct: 58 DTEEVIFTSGATESNNLAILGLARAGEQKGKK----HIITSAIEHPAVLEPIRALERNGF 113 Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQ 174 + +PV G +D+ L D + R T ++++M VNNETG IQPI+EIA++++ ++ Sbjct: 114 TVTYLPVDESGRIDVDELADAI--RPDTL---LVSIMHVNNETGSIQPIREIAEVLEAHE 168 Query: 175 GILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLP---SPLLRG 231 VDA Q G+I + + + D + S HK+ P G GALV R+ P++ G Sbjct: 169 AFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFG 228 Query: 232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291 G QE+G R GT +I G AA+ ++ Q ++ A+R+ L L+ + + G Sbjct: 229 GGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNG 286 Query: 292 KDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQ- 350 AE I + FSI + +E L + L AVS GSACSS K + +HVL AMG DT + Sbjct: 287 DPAETIPHILNFSIDGVNSEALIVNLR-ADAAVSTGSACSSSKYEPSHVLQAMGLDTDRA 345 Query: 351 -GAVRVS 356 GA+R S Sbjct: 346 RGAIRFS 352

RPSBLAST alignment for GI: 254781091 and conserved domain: TIGR03235