RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781091|ref|YP_003065504.1| putative
pyridoxal-phosphate-dependent aminotransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
         (383 letters)



>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
           and related enzymes [Amino acid transport and
           metabolism].
          Length = 386

 Score =  381 bits (980), Expect = e-106
 Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 12/382 (3%)

Query: 3   KRVYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAK 61
             +YLD  AT P+   V ++ +  L   +GNPSS+H  G++ R  +EE+R  IA   GA 
Sbjct: 1   MMIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD 60

Query: 62  PDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH---KIHK 118
           P+ ++FTS ATE+ N  +        +      +  SAIEHPAV     +      ++  
Sbjct: 61  PEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTY 120

Query: 119 IPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILV 178
           +PV S G+VD++ L + L          ++++M  NNETG IQPI EI +I KE   +  
Sbjct: 121 LPVDSNGLVDLEQLEEALRPDT-----ILVSIMHANNETGTIQPIAEIGEICKERGILFH 175

Query: 179 VDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQ 238
           VDAVQA G+IP+ +EE+  D L  S+HK G P G GAL  R  + L  PL+ GG QE+G 
Sbjct: 176 VDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRL-EPLIHGGGQERGL 234

Query: 239 RAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERIS 298
           R+GTEN   I GF  AA+  V+++++ ++R+  +RD LE  L ++IP++ + G D  R+ 
Sbjct: 235 RSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLP 294

Query: 299 NTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFD--TSQGAVRVS 356
           N   FS P ++ E L +ALDL GIAVS GSACSSG ++ +HVL AMG     + G++R S
Sbjct: 295 NILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFS 354

Query: 357 CGDSTTQEDIDIFLNALQKIIR 378
            G  TT+E+ID    AL++II+
Sbjct: 355 LGRFTTEEEIDAAAEALKEIIK 376


>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain is
           found in amino transferases, and other enzymes including
           cysteine desulphurase EC:4.4.1.-.
          Length = 371

 Score =  216 bits (552), Expect = 9e-57
 Identities = 115/393 (29%), Positives = 169/393 (43%), Gaps = 50/393 (12%)

Query: 5   VYLDWNATAPLLEVVRQSFVK-SLDFYGNP-SSVHKEGQKTRLYIEESRRIIADFCGAKP 62
           +YLD  AT    + V  +  +   D+ GN    VH  G++     EE+R  +A+F  A  
Sbjct: 1   IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60

Query: 63  DH-VVFTSSATEAANWV---LTPHFYQGSHKISIDSLYISAIEH-----PAVYAGGHFPS 113
           D  ++FTS  TEA N V   L      G      D + ++ +EH     P         +
Sbjct: 61  DEEIIFTSGTTEAINLVAISLGRRLKPG------DEILVTEMEHHANLVPWQELAKRTGA 114

Query: 114 HKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEY 173
             +  IPV   G++D+ AL   L  R  T    ++A+  V+N TG + P++EI ++  EY
Sbjct: 115 -TVRVIPVDPNGLLDLDALEKLLTPR--TK---LVAITHVSNVTGTVNPVEEIGKLAHEY 168

Query: 174 QGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDIL--LPSPLLRG 231
             ++VVDA QA G  P+ ++ +  DFL  S HKL  P G G L  R D+L  LP     G
Sbjct: 169 GALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPWKGGG 228

Query: 232 G-------DQEKGQ-------RAGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYL 276
           G        QE           AGT N A I G   A   + +  ++        +  YL
Sbjct: 229 GMIDLVSLLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYL 288

Query: 277 EQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIK 336
            + L   IP I +    AER  +   F+ P +    +   LD  GIAV +G  C+     
Sbjct: 289 YERLLA-IPGIRLVPAVAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCAQP--- 344

Query: 337 KNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIF 369
                  M      G +R S     T+E++D  
Sbjct: 345 ------LMERLGVHGTLRASLYFYNTEEEVDRL 371


>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
           transport and metabolism].
          Length = 428

 Score =  208 bits (530), Expect = 2e-54
 Identities = 130/383 (33%), Positives = 204/383 (53%), Gaps = 21/383 (5%)

Query: 3   KRVYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAK 61
           + VYLD  AT P+   V  + +  L  + GNP S    G K    +E +R  +A    A 
Sbjct: 43  RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHS-RSYGWKAEDAVEAAREQVAKLINAD 101

Query: 62  PDHVVFTSSATEAANWVL--TPHFYQGSHKISIDSLYISAIEHPAVYAGGHF---PSHKI 116
           P  +VFTS ATE+ N VL     F+    K  I +L     EHP V            ++
Sbjct: 102 PSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITL---QTEHPCVLDSCRALQEEGLEV 158

Query: 117 HKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGI 176
             +PV   G+VDI  L + +  +  T    ++++M VNNE GV+QP+KEI +I +E    
Sbjct: 159 TYLPVEDSGLVDISKLREAIRSK--TR---LVSIMHVNNEIGVLQPVKEIVKICREEGVQ 213

Query: 177 LVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLP--SPLLRGGDQ 234
           + VDA QA G+IP+ ++E+ ADFL IS+HK+  P G GAL  R         P L GG Q
Sbjct: 214 VHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQ 273

Query: 235 EKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDA 294
           E+G R+GT    +  G   AA+ + K++    + +  + + L   + + +P + + G   
Sbjct: 274 ERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGK 333

Query: 295 ERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMG--FDTSQGA 352
            R       S P+++ E L   +DL+ +A+S+GSAC+S  ++ ++VL A+G   D +  +
Sbjct: 334 SRYPGLVSLSFPYVEGESL--LMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSS 391

Query: 353 VRVSCGDSTTQEDIDIFLNALQK 375
           +R+S G  TT+EDID  ++A++K
Sbjct: 392 IRISIGRYTTEEDIDYLVDAIKK 414


>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
           metabolism].
          Length = 405

 Score =  203 bits (517), Expect = 7e-53
 Identities = 112/402 (27%), Positives = 179/402 (44%), Gaps = 49/402 (12%)

Query: 5   VYLDWNATAPLLEVVRQSFVKSL-DFYGNP-SSVHKEGQKTRLYIEESRRIIADFCGAKP 62
           VYLD  AT+   + V  +  +    +  N     H   ++     E +R  +A F  A  
Sbjct: 24  VYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS 83

Query: 63  -DHVVFTSSATEAANWV---LTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH---- 114
            D +VFT   TEA N V   L      G      D + +S +EH +        +     
Sbjct: 84  SDEIVFTRGTTEALNLVARGLGRSLKPG------DEIVVSDLEHHSNIVPWQELAKRTGA 137

Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQ 174
           K+  IP+   G++D+ AL   +  +       ++A+  V+N TG + P+KEIA++  E+ 
Sbjct: 138 KVRVIPLDDDGLLDLDALEKLITPKT-----KLVALSHVSNVTGTVNPVKEIAELAHEHG 192

Query: 175 GILVVDAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVFREDIL--LPSPLLRG 231
            +++VDA QAAG +P+ ++E+  DFL  S HK L  P G G L  R+++L  L   L  G
Sbjct: 193 ALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGG 252

Query: 232 GDQEKGQR--------------AGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYL 276
           G  E   R              AGT N A   G A A   +++  ++   +    + +YL
Sbjct: 253 GMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYL 312

Query: 277 EQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIK 336
            + L + +P + IYG           F++  +    +   LD +GIAV AG  C+     
Sbjct: 313 LEGLSE-LPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQ---- 367

Query: 337 KNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378
              +   +G D     +R S     T+ED+D  L AL+K + 
Sbjct: 368 --PLHRLLGVD---ATIRASLHLYNTEEDVDRLLEALKKALA 404


>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
           belongs to the pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to cysteine
           desulfurase (SufS) and selenocysteine lyase. SufS
           catalyzes the removal of elemental sulfur and selenium
           atoms from L-cysteine, L-cystine, L-selenocysteine, and
           L-selenocystine to produce L-alanine; and selenocysteine
           lyase catalyzes the decomposition of L-selenocysteine..
          Length = 373

 Score =  164 bits (417), Expect = 4e-41
 Identities = 118/412 (28%), Positives = 180/412 (43%), Gaps = 82/412 (19%)

Query: 5   VYLDWNATA----PLLEVVRQSFVKSLDFYGNPS-SVHKEGQK-TRLYIEESRRIIADFC 58
           VYLD  AT+    P+++ +   +     +  N    VH+   + T  Y E +R  +A F 
Sbjct: 1   VYLDNAATSQKPQPVIDAIVDYYRH---YNANVHRGVHELSARATDAY-EAAREKVARFI 56

Query: 59  GAK-PDHVVFTSSATEAANWV---LTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH 114
            A  PD ++FT + TEA N V   L      G   +       S +EH +       P  
Sbjct: 57  NAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIV------TSVMEHHSN----IVPWQ 106

Query: 115 --------KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEI 166
                   K+  +PV   G +D++AL   L +R       ++AV  V+N  G I P+KEI
Sbjct: 107 QLAERTGAKLKVVPVDDDGQLDLEALEKLLTER-----TKLVAVTHVSNVLGTINPVKEI 161

Query: 167 AQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPS 226
            +I  E    ++VD  Q+AG +P+ ++++  DFL  S HK+  P G G L  +E++L   
Sbjct: 162 GEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEM 221

Query: 227 PLLRGG-------DQEKGQ--------RAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFA 271
           P   GG         E+           AGT N A   G   AA   ++ I        A
Sbjct: 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLG-AAIDYLEKIGME-----A 275

Query: 272 IRDYLEQEL-----KKL--IPNIIIYGKDAER---ISNTCCFSIPFLKAEVLQIALDLEG 321
           I  + E EL     ++L  IP + +YG   +R   +S    F++  +    +   LD  G
Sbjct: 276 IAAH-EHELTAYALERLSEIPGVRVYGDAEDRAGVVS----FNLEGIHPHDVATILDQYG 330

Query: 322 IAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNAL 373
           IAV AG  C+        ++  +G     G VR S G   T+E+ID  + AL
Sbjct: 331 IAVRAGHHCAQ------PLMRRLGV---PGTVRASFGLYNTEEEIDALVEAL 373


>gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
           aspartate aminotransferase [Amino acid transport and
           metabolism].
          Length = 383

 Score = 81.0 bits (200), Expect = 4e-16
 Identities = 63/268 (23%), Positives = 107/268 (39%), Gaps = 38/268 (14%)

Query: 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
           VD + + + L++      I  +AV+     TGV+ P+KEIA+  KE+  +L+VDAV + G
Sbjct: 117 VDPEEVEEALDKDP---DIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG 173

Query: 187 RIPLSIEEIKADFLIISSHK-LGAPVGAGALVFREDIL------------LPSPLLRGGD 233
             PL ++E   D  I  S K LGAP G   +   E  L            L         
Sbjct: 174 GEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYM 233

Query: 234 QEKGQRAGTENYAVIGGFAVAAQQMVKD-IQKRSSRVFAIRDYLEQELKKLIPNIIIYGK 292
           ++KG    T    +I     A   ++++ ++ R +R   + + L   L+ L   + ++  
Sbjct: 234 EKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL--GLELFAD 291

Query: 293 DAERISNTCCFSIP--FLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQ 350
              R        +P      +V +  L   G+ ++ G     GKI               
Sbjct: 292 PERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKI--------------- 336

Query: 351 GAVRVSCGDSTTQEDIDIFLNALQKIIR 378
              R+    +   ED+   L AL+  +R
Sbjct: 337 --FRIGHMGNVRPEDVLAALAALEAALR 362


>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
           type I) of pyridoxal phosphate (PLP)-dependent enzymes.
           PLP combines with an alpha-amino acid to form a compound
           called a Schiff base or aldimine intermediate, which
           depending on the reaction, is the substrate in four
           kinds of reactions (1) transamination (movement of amino
           groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           Structure and sequence analysis has revealed that the
           PLP dependent enzymes can be classified into four major
           groups of different evolutionary origin: aspartate
           aminotransferase superfamily (fold type I), tryptophan
           synthase beta superfamily (fold type II), alanine
           racemase superfamily (fold type III), and D-amino acid
           superfamily (fold type IV) and Glycogen phophorylase
           family (fold type V)..
          Length = 170

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 18/180 (10%)

Query: 47  IEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY 106
           +EE    +A       D  VF  S T A    L      G   I   + + S     A  
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAEL 61

Query: 107 AGGHFPSHKIHKIPVL--SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNET--GVIQP 162
           AG      K   +PV     G +D+  L +   + N         ++   N T  GV+ P
Sbjct: 62  AGA-----KPVPVPVDDAGYGGLDVAILEELKAKPNVA------LIVITPNTTSGGVLVP 110

Query: 163 IKEIAQIVKEYQGILVVDAVQAAGRIP---LSIEEIKADFLIISSHKLGAPVGAGALVFR 219
           +KEI +I KEY  +L+VDA  A G  P   + I E  AD +  S HK     G G ++ +
Sbjct: 111 LKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170


>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
           family. This family belongs to pyridoxal phosphate
           (PLP)-dependent aspartate aminotransferase superfamily
           (fold I). The major groups in this CD correspond to
           alanine-glyoxylate aminotransferase (AGAT),
           serine-glyoxylate aminotransferase (SGAT), and
           3-hydroxykynurenine transaminase (HKT). AGAT is a
           homodimeric protein, which catalyses the transamination
           of glyoxylate to glycine, and SGAT converts serine and
           glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
           the PLP-dependent transamination of 3-hydroxykynurenine,
           a potentially toxic metabolite of the kynurenine
           pathway..
          Length = 356

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNE--TGVIQPIKEIAQIVKEYQGILVVDAVQA 184
           V  + + + LEQ +        AV   +NE  TGV+ P++ I  + K++  +L+VDAV +
Sbjct: 111 VSPEEIAEALEQHDIK------AVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSS 164

Query: 185 AGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVFRE 220
            G  P  ++E   D     S K LGAP G G + F E
Sbjct: 165 LGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSE 201


>gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
           proteins [Amino acid transport and metabolism].
          Length = 460

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 61/290 (21%), Positives = 106/290 (36%), Gaps = 39/290 (13%)

Query: 66  VFTSSATEA--------ANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIH 117
            FTS  TEA                  +        ++  S   H +      +    + 
Sbjct: 123 TFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLR 182

Query: 118 KIP-VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGI 176
           ++P V +   +D+ AL + +++      +  +       +TG I  I+E+A I +EY   
Sbjct: 183 RVPTVPTDYRIDVDALEEAIDENTIGGVV--VGTAG-TTDTGSIDDIEELADIAEEYGIW 239

Query: 177 LVVDAVQAAGRIPLSIEEIKADFLI-------ISSHKLG-APVGAGALVFREDILLP--- 225
           L VDA      +P    + + DF +       +  HK G AP+G G ++FR++  L    
Sbjct: 240 LHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRIL 299

Query: 226 ---SPLLRGGD----QEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQ 278
                 L GG        G R G      +  +A   +   +  +K   R   +  YL +
Sbjct: 300 IFADYYLPGGGIPNFTILGSRPGR---QALALYANLRRLGREGYRKLLDRTLELARYLAE 356

Query: 279 ELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQI--ALDLEGIAVSA 326
           EL+KL    ++     E       F +   +  +  +   LD  G  V A
Sbjct: 357 ELEKLGDFELV----NEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPA 402


>gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1
           [General function prediction only].
          Length = 385

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQ-IVKEY 173
           ++  +       V ++ +T+ L Q         + V   ++ TGV+Q +  I+  +  ++
Sbjct: 117 EVDVVEADIGQAVPLEEITEKLSQHK----PKAVFVTHGDSSTGVLQDLLAISGELCHKH 172

Query: 174 QGILVVDAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVF 218
           + +L+VD V + G     ++E   D     S K LGAP G   + F
Sbjct: 173 EALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISF 218


>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Pyridoxal
           phosphate combines with an alpha-amino acid to form a
           compound called a Schiff base or aldimine intermediate,
           which depending on the reaction, is the substrate in
           four kinds of reactions (1) transamination (movement of
           amino groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           The major groups in this CD corresponds to Aspartate
           aminotransferase a, b and c, Tyrosine, Alanine,
           Aromatic-amino-acid, Glutamine phenylpyruvate,
           1-Aminocyclopropane-1-carboxylate synthase,
           Histidinol-phosphate, gene products of malY and cobC,
           Valine-pyruvate aminotransferase and Rhizopine
           catabolism regulatory protein..
          Length = 350

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 66/350 (18%), Positives = 129/350 (36%), Gaps = 66/350 (18%)

Query: 51  RRIIADFCG------AKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPA 104
           R  IA++ G        P+ +V T+ A EA + +L      G  ++ +        E  A
Sbjct: 42  REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGD-EVLVPDPTYPGYEAAA 100

Query: 105 VYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-- 162
             AG      ++  +P+  +G      L   L +   T    ++ +   NN TG +    
Sbjct: 101 RLAGA-----EVVPVPLDEEGGFL---LDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEE 152

Query: 163 -IKEIAQIVKEYQGILVVDAV------QAAGRIPLSIEEIKADFLIISSH-K-LGAP--- 210
            ++E+A++ K++  +++ D               L++ +     +++ S  K  G P   
Sbjct: 153 ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLR 212

Query: 211 VGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKD----IQKRS 266
           +G         ++ P   L    ++      T   + +     AA   + D    +++  
Sbjct: 213 IGY--------LIAPPEELLERLKKL-LPYTTSGPSTLS--QAAAAAALDDGEEHLEELR 261

Query: 267 SRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIP-FLKAEVLQIALDLEGIAVS 325
            R    RD L + LK+L P +++               +P     E L+  L   G+ V 
Sbjct: 262 ERYRRRRDALLEALKELGPLVVVKPSGG----FFLWLDLPEGDDEEFLERLLLEAGVVVR 317

Query: 326 AGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQK 375
            GSA                 +  +G VR+S    T +E+++  L  L +
Sbjct: 318 PGSAF---------------GEGGEGFVRLSFA--TPEEELEEALERLAE 350


>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD correspond to DOPA/tyrosine decarboxylase
           (DDC), histidine decarboxylase (HDC), and glutamate
           decarboxylase (GDC). DDC is active as a dimer and
           catalyzes the decarboxylation of tyrosine. GDC catalyzes
           the decarboxylation of glutamate and HDC catalyzes the
           decarboxylation of histidine..
          Length = 345

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 26/184 (14%)

Query: 54  IADFCGAKPDHVVFTSSATE-------AANWVLTPHFYQGSHKISIDSL--YISAIEHPA 104
             D  G      VFTS  +E       AA          G  +  ID L    S   H +
Sbjct: 55  SEDADG------VFTSGGSESNLLALLAARDRARKRLKAGGGRG-IDKLVIVCSDQAHVS 107

Query: 105 VYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIP-MIAVMFVNNETGVIQPI 163
           V     +   K+  +PV   G +D +AL   +++  +    P M+       +TG I P+
Sbjct: 108 VEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPL 167

Query: 164 KEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLI-------ISSHKLG-APVGAGA 215
           +EIA + ++Y   L VDA      +P   E    DF I       +  HK G  P+G  A
Sbjct: 168 EEIADLAEKYDLWLHVDAAYGGFLLP-FPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA 226

Query: 216 LVFR 219
           ++ R
Sbjct: 227 VLVR 230


>gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
           enzymes [General function prediction only].
          Length = 382

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 127 VDIQALTDFLEQRNSTCGIP--MIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQA 184
           +  +   + +E+     G P  +  +  V+ E G +   K++A+I +EY   L+++    
Sbjct: 137 ITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYT 196

Query: 185 AGRIPLSIEEIKADFLIISSHKLGAPVG-AGALVFRED 221
            GR+P+S +EI ADF++ S HK  A     G L   E+
Sbjct: 197 VGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEE 234


>gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related
           aminotransferases [Amino acid transport and metabolism].
          Length = 447

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 56/280 (20%)

Query: 43  TRLYIEESRRIIADFCGAKPDHVVFTSSATEA-------------ANWVLTPHFYQGSHK 89
              Y+E + ++ A   G+    V F +S  EA                V+   F    H 
Sbjct: 98  YEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIA--FDGAFHG 155

Query: 90  ISIDSLYISAIEHPAVYAGGHFPSHKIH-----------KIPVLSKGIVDIQALTDFLEQ 138
            ++ +L ++  + P     G  P    H            I     G   ++ +   L  
Sbjct: 156 RTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD 215

Query: 139 RNSTCGIPMIAVMF---VNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRIP- 189
                G   +A +    +  E G+I P    +K + ++ +E+  +L+ D VQ   GR   
Sbjct: 216 LEV--GPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK 273

Query: 190 -LSIE--EIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRAGT---E 243
             + E   ++ D ++  +  LG  +   A+V R +I+   P         G   GT    
Sbjct: 274 MFAFEHFGVEPD-IVTLAKSLGGGLPLSAVVGRAEIMDWPP---------GGHGGTFGGN 323

Query: 244 NYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKL 283
             A     AV      +++ +R++ +    +YL   L++L
Sbjct: 324 PVACAAALAVLDVIEEENLLERAAEL---GEYLRDRLEEL 360


>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
           to the pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
           produced by O-phosphoseryl-tRNA synthetase which ligates
           O-phosphoserine (Sep) to tRNA(Cys), and
           Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
           Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
           SepCysS forms a dimer, each monomer is composed of a
           large and small domain; the larger, a typical pyridoxal
           5'-phosphate (PLP)-dependent-like enzyme fold.  In the
           active site of each monomer, PLP is covalently bound to
           a conserved Lys residue near the dimer interface..
          Length = 361

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 146 PMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSH 205
            +  +  V+   G +   K+IA++  EY   L+++     GR+P+S +E+ ADF++ S H
Sbjct: 141 ALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGH 200

Query: 206 K-LGAPVGAGALVFRED 221
           K + A    G L   E+
Sbjct: 201 KSMAASAPIGVLATTEE 217


>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
           beta-subunits. This family consists of Glycine cleavage
           system P-proteins EC:1.4.4.2 from bacterial, mammalian
           and plant sources. The P protein is part of the glycine
           decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
           annotated as glycine cleavage system or glycine
           synthase. GDC consists of four proteins P, H, L and T.
           The reaction catalysed by this protein is: Glycine +
           lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
           CO2. Alpha-beta-type dimers associate to form an
           alpha(2)beta(2) tetramer, where the alpha- and
           beta-subunits are structurally similar and appear to
           have arisen by gene duplication and subsequent
           divergence with a loss of one active site. The members
           of this CD are widely dispersed among all three forms of
           cellular life..
          Length = 398

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (13%)

Query: 101 EHPAVYA-GGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVN-NETG 158
            +PAV    G     ++ ++P    G VD++AL + + +  +       A+M    N  G
Sbjct: 120 TNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVA-------ALMVQYPNTLG 172

Query: 159 VI-QPIKEIAQIVKEYQGILVVDA--VQAAGRIPLSIEEIKADFLIISSHKLGAPVG--- 212
           V    IKEIA I      ++ VD   +   G  P    E  AD ++ +  K G P G   
Sbjct: 173 VFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPG--EYGADIVVGNLQKTGVPHGGGG 230

Query: 213 --AGALVFREDIL--LPSPLLRGGDQEKGQRAGT 242
             AG    +++++  LP  L+      +G RA  
Sbjct: 231 PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFR 264


>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. 
          Length = 351

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 65/372 (17%), Positives = 123/372 (33%), Gaps = 85/372 (22%)

Query: 39  EGQKTRLY-----IEESRRIIADFCGA------KPDHVVFTSSATEAANWVLTPHFYQGS 87
            G    LY     + E R  +A F G         +  V   S   A    L        
Sbjct: 28  AGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLANPG 87

Query: 88  HKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGI--VDIQALTDFLEQRNSTCGI 145
             I + +   ++    A  AGG     ++ + P+       +D  AL   L+++      
Sbjct: 88  DAILVPAPTYASYIRIARLAGG-----EVVRYPLYDSNDFHLDFDALEAALKEKPK---- 138

Query: 146 PMIAVMFVNNETGVIQP---IKEIAQIVKEYQGILVVD------AVQAAGRIPLSIEEIK 196
            ++     +N TG + P   ++++  + KE+  +L+VD         +   +       +
Sbjct: 139 -VVLHESPHNPTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAE 197

Query: 197 ADFLIIS---SHKLGAP---VGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGG 250
              L++    S   G     VG         IL  + ++      K  R      +    
Sbjct: 198 GPNLLVVGSFSKAFGLAGWRVGY--------ILGNAAVISQ--LRKLARPF--YSSTHLQ 245

Query: 251 FAVAA-----QQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSI 305
            A AA       +  ++++   R+   RDYL   L+     + +        S    F +
Sbjct: 246 AAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA--GLSVL------PSQAGFFLL 297

Query: 306 PFLKAEV---LQIAL-DLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDST 361
             L  E    L   L +  G+ V+ GS+                     G +R++     
Sbjct: 298 TGLDPETAKELAQVLLEEVGVYVTPGSSP-----------------GVPGWLRITVA-GG 339

Query: 362 TQEDIDIFLNAL 373
           T+E+++  L A+
Sbjct: 340 TEEELEELLEAI 351


>gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and
           metabolism].
          Length = 407

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 26/174 (14%)

Query: 54  IADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPS 113
           +A   GA+   VV T + +     VL              +L         V  G +FP+
Sbjct: 85  LAPLIGARAGEVVVTDTTSINLFKVL------------AAALRPQEGRRVIVSEGDNFPT 132

Query: 114 H--------KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKE 165
                     +  I    +G++  +AL + +        + ++ +  VN +TG +  ++ 
Sbjct: 133 DLYIAEGLADLLGIGYDLEGVIAPRALEEAITDD-----VAVVLLSHVNYKTGQLLDMRA 187

Query: 166 IAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVF 218
           I  +  ++  ++  D   +AG +P+ +    ADF I  S+K L    GA A +F
Sbjct: 188 ITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLF 241


>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. 
          Length = 288

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 24/185 (12%)

Query: 54  IADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY-AGGH-- 110
           +A+  G   +  +F  S T  AN +        +H    D +      H      GGH  
Sbjct: 41  VAELFGK--EAALFVPSGT-MANQLALM-----AHCRRGDEVICGEPAHIYFDETGGHAE 92

Query: 111 FPSHKIHKIPVLSKGIVDIQALTDFLEQRNST--CGIPMIAVMFVNNETG--VIQP--IK 164
               +   +P    G +D++ L   +            +I++   +N  G  V+    ++
Sbjct: 93  LGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELR 152

Query: 165 EIAQIVKEYQGILVVDA---VQAAGRIPLSIEEIK--ADFLIISSHK-LGAPVGAGALVF 218
           EI  I +E+   L +D      AA  + + ++EI   AD + +S  K LGAPVG   L  
Sbjct: 153 EIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAPVG-SVLAG 211

Query: 219 REDIL 223
            +D +
Sbjct: 212 SDDFI 216


>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to ornithine
           aminotransferase, acetylornithine aminotransferase,
           alanine-glyoxylate aminotransferase, dialkylglycine
           decarboxylase, 4-aminobutyrate aminotransferase,
           beta-alanine-pyruvate aminotransferase,
           adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase, and glutamate-1-semialdehyde
           2,1-aminomutase. All the enzymes belonging to this
           family act on basic amino acids and their derivatives
           are involved in transamination or decarboxylation..
          Length = 413

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 47/260 (18%), Positives = 95/260 (36%), Gaps = 59/260 (22%)

Query: 4   RVYLD----WNATA------PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRI 53
             YLD                ++E + +  +  L  +                +E +  +
Sbjct: 36  NRYLDFLSGIGVLNLGHNHPEVVEAL-KEQLAKLTHFSLG------FFYNEPAVELAELL 88

Query: 54  IADFCGAKPDHVVFTSS---ATEAA----------NWVLTPHFYQGSHKISIDSLYISAI 100
           +A       D V F +S   A EAA            +++  F    H  ++ +L ++  
Sbjct: 89  LALT-PEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIIS--FEGAYHGRTLGALSLTG- 144

Query: 101 EHPAVYAGGHFPSHKIHKIP------VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMF-- 152
                  G       +  +P        ++   D++AL + LE+         +A +   
Sbjct: 145 -SKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEE-----VAAVIVE 198

Query: 153 -VNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI--PLSIE--EIKADFLII 202
            +  E GVI P    +K + ++ +++  +L+ D VQ   GR     + E   ++ D ++ 
Sbjct: 199 PIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD-IVT 257

Query: 203 SSHKLGAPVGAGALVFREDI 222
               LG  +  GA++ RE+I
Sbjct: 258 LGKGLGGGLPLGAVLGREEI 277


>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
           enzymes [Coenzyme metabolism].
          Length = 388

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 45/254 (17%)

Query: 19  VRQSFVKSLDFYGNPS-SVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW 77
           + ++   ++  YG  +         + L++E    + ADF G     ++F+S     AN 
Sbjct: 58  LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEEL-ADFLG-AEAALLFSSGFV--ANL 113

Query: 78  VLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLE 137
            L     +    I  D L      H ++  G      ++ +         D+  L   LE
Sbjct: 114 GLLSALLKKGDLIFSDELN-----HASIIDGIRLSRAEVRRFKHN-----DLDHLEALLE 163

Query: 138 Q-RNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIK 196
           + R +     +I    V +  G I P+ E+ ++ ++Y  +L VD   A G          
Sbjct: 164 EARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVG---------- 213

Query: 197 ADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQ 256
               ++  +  G     G      DI++       G   K            GG+ +A  
Sbjct: 214 ----VLGPNGRGLAEHFGLEPEEVDIIV-------GTLGKA-------LGSSGGY-IAGS 254

Query: 257 QMVKDIQKRSSRVF 270
             + D  +  +R F
Sbjct: 255 AALIDYLRNRARPF 268


>gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase). This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD correspond to tryptophanase (Tnase) and
           tyrosine phenol-lyase (TPL). Tnase and TPL are active as
           tetramers and catalyze beta-elimination reactions. Tnase
           catalyzes degradation of L-tryptophan to yield indole,
           pyruvate and ammonia and TPL catalyzes degradation of
           L-tyrosine to yield phenol, pyruvate and ammonia..
          Length = 431

 Score = 35.4 bits (82), Expect = 0.028
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 124 KGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETG----VIQPIKEIAQIVKEYQGILVV 179
           KG +D+  L   +++  +   IP I +   NN  G     +  ++E+ ++  +Y   +V+
Sbjct: 133 KGNIDVAKLEKLIDEVGAE-NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVL 191

Query: 180 DAVQAA 185
           DA + A
Sbjct: 192 DAARFA 197


>gnl|CDD|109343 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
           conserved domain. 
          Length = 370

 Score = 34.7 bits (80), Expect = 0.050
 Identities = 48/275 (17%), Positives = 80/275 (29%), Gaps = 47/275 (17%)

Query: 66  VFTSSATE-------AANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHK 118
           V    ++E       AA              +     Y S   H ++         ++ +
Sbjct: 107 VLQGGSSESNLLALLAARTKWIRRMKAAGKPLGKLVAYTSDQAHSSIEKAALIAGVELRE 166

Query: 119 IPVLSKGIVDIQALTDFLEQRNSTCGIPM-IAVMFVNNETGVIQPIKEIAQIVKEYQGIL 177
           IP    G +    L   +E+      IP  +        +G   P++E+  I  +Y   L
Sbjct: 167 IPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWL 226

Query: 178 VVDAVQAAG------------RIPLSIEEIKADFLIISSHKLG-APVGAGALVFREDILL 224
            VDA  A               I        AD    + HK     +   AL  R+   L
Sbjct: 227 HVDAAYAGSAFICPEFRHWLFGIER------ADSFSFNPHKWMLVLLDCSALWVRDKGAL 280

Query: 225 PSPL------LRGGDQEKGQRAGTENYAVIGGFAVAAQQM--------VKDIQKRSSRVF 270
              L      L   D          ++ +         ++        V+ +Q +  R  
Sbjct: 281 QQALQFNPEYLGHTD--SDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHV 338

Query: 271 AIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSI 305
            +  Y E  ++K     I     AER     CF +
Sbjct: 339 ELAKYFEALVRKDSRFEIC----AERGLGLVCFRL 369


>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD corresponds to ornithine decarboxylase (ODC),
           arginine decarboxylase (ADC) and lysine decarboxylase
           (LDC). ODC is a dodecamer composed of six homodimers and
           catalyzes the decarboxylation of tryptophan. ADC
           catalyzes the decarboxylation of arginine and LDC
           catalyzes the decarboxylation of lysine. Members of this
           family are widely found in all three forms of life..
          Length = 294

 Score = 34.1 bits (79), Expect = 0.058
 Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 50/206 (24%)

Query: 24  VKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAAN-----WV 78
           +  LD   +P+   KE Q+          + A   GA   H  F  + T ++N      V
Sbjct: 48  LTGLDDLLDPTGPIKEAQE----------LAARAFGA--KHTFFLVNGTSSSNKAVILAV 95

Query: 79  LTPH----FYQGSHKISIDSLYISAIE----HPAVYAGGHFPSHKIHKIPVLSKGIVDIQ 130
             P       +  HK  I+ L +S        P                     G +  +
Sbjct: 96  CGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIA------------GGIPPE 143

Query: 131 ALTDFLEQRNSTCGIPMIAVMFVNNET--GVIQPIKEIAQIVKEYQGILVVDAVQAA--- 185
                L +              + N T  G+   +++I +        ++VD    A   
Sbjct: 144 TFKKALIEHPDAKAA------VITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFR 197

Query: 186 --GRIPLSIEEIKADFLIISSHKLGA 209
               +P S     AD ++ S+HK   
Sbjct: 198 FHPILPSSAAMAGADIVVQSTHKTLP 223


>gnl|CDD|30752 COG0403, GcvP, Glycine cleavage system protein P
           (pyridoxal-binding), N-terminal domain [Amino acid
           transport and metabolism].
          Length = 450

 Score = 33.3 bits (76), Expect = 0.12
 Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 67/287 (23%)

Query: 126 IVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAA 185
           +VD   L D     +    +  + V + N    V + ++ + +       +++V    AA
Sbjct: 194 VVDADDLDDLESADDG--DVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIV----AA 247

Query: 186 GRIPLSI----EEIKADFLIISSHKLGAPVG-----AGALVFREDIL--LPSPLLRGGDQ 234
             + L +     E  AD ++ S+ + G P+G     AG    +++    +P  L+     
Sbjct: 248 DPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVD 307

Query: 235 EKGQRA----------------GTEN-------YAVIGGFAVAAQQMVKD-IQKRSSRVF 270
             G+RA                 T N        A+    ++ A       +++ + R+ 
Sbjct: 308 AAGKRAFRLALQTREQHIRREKATSNICTNQALLALA--ASMYAVYHGPQGLKEIAERIH 365

Query: 271 AIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSAC 330
            +  YL   LK++   + +     +   +T    +P   AE L  A    GI +      
Sbjct: 366 RLAAYLAAGLKEIGAGVELVF---DHFFDTFTVRVPEEVAEALLAAAIAGGINL------ 416

Query: 331 SSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKII 377
              ++  + VL             ++  ++TT+EDID  + A   + 
Sbjct: 417 --RRVDADTVL-------------IALTETTTKEDIDALVAAFGGVN 448


>gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
           apparently involved in regulation of cell wall
           biogenesis [Cell envelope biogenesis, outer membrane].
          Length = 374

 Score = 32.5 bits (74), Expect = 0.19
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 46  YIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAV 105
           ++    +  A++ G K  + V  SS T A +  L         ++ + S    A  +  +
Sbjct: 35  FVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVL 92

Query: 106 YAGGHFPSHKIHKIPVLSKGIVDIQALT-----DFLEQRNSTCGIPMIAVMFVNNETGVI 160
             G           PV     VDI   T     D +E   +     +I V       G  
Sbjct: 93  LVGA---------KPVF----VDIDPDTLNIDPDLIEAAITPRTKAIIPVHLA----GQP 135

Query: 161 QPIKEIAQIVKEYQGILVVDAVQAAG 186
             +  I  + K +   ++ DA QA G
Sbjct: 136 CDMDAIMALAKRHGLPVIEDAAQAHG 161


>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
           phosphate (PLP)-dependent aspartate aminotransferase
           superfamily (fold I). The major groups in this CD
           corresponds to serine palmitoyltransferase (SPT),
           5-aminolevulinate synthase (ALAS),
           8-amino-7-oxononanoate synthase (AONS), and
           2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
           responsible for the condensation of L-serine with
           palmitoyl-CoA to produce 3-ketodihydrospingosine, the
           reaction of the first step in sphingolipid biosynthesis.
           ALAS is involved in heme biosynthesis; it catalyzes the
           synthesis of 5-aminolevulinic acid from glycine and
           succinyl-coenzyme A. AONS catalyses the decarboxylative
           condensation of l-alanine and pimeloyl-CoA in the first
           committed step of biotin biosynthesis. KBL catalyzes the
           second reaction step of the metabolic degradation
           pathway for threonine converting 2-amino-3-ketobutyrate,
           to glycine and acetyl-CoA. The members of this CD are
           widely found in all three forms of life..
          Length = 349

 Score = 32.1 bits (74), Expect = 0.23
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 157 TGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
            G I P+ E+  + K+Y  IL VD   + G
Sbjct: 145 DGDIAPLPELVDLAKKYGAILFVDEAHSVG 174


>gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme
           transport and metabolism].
          Length = 570

 Score = 32.3 bits (73), Expect = 0.24
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 128 DIQALTDFLEQRNSTCGIP-MIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
           D+  L   L+    +  +P ++A   V++  G + P++E+  +  +Y  I  +D V A G
Sbjct: 288 DLDHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVG 345


>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
           [Amino acid transport and metabolism].
          Length = 393

 Score = 31.8 bits (72), Expect = 0.32
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 47  IEESRRIIADFCGAK-------PDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISA 99
           I E R  IA+    +        + ++ T+ A EA           G   +  D  Y S 
Sbjct: 67  IPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSY 126

Query: 100 IEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGV 159
                + AGG      +      +    D++ L   +  +        I +   NN TG 
Sbjct: 127 EAAVKL-AGGK--PVPVPLDEEENGFKPDLEDLEAAITPK-----TKAIILNSPNNPTGA 178

Query: 160 IQP---IKEIAQIVKEYQGILVVDAV 182
           +     +K I ++ +E+  I++ D +
Sbjct: 179 VYSKEELKAIVELAREHDIIIISDEI 204


>gnl|CDD|35848 KOG0629, KOG0629, KOG0629, Glutamate decarboxylase and related
           proteins [Amino acid transport and metabolism].
          Length = 510

 Score = 31.8 bits (72), Expect = 0.33
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 23/147 (15%)

Query: 95  LYISAIEHPAVYAGGHF---PSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVM 151
           L+ S   H ++     F    +    K+    +G +    L   + +  +  G+P     
Sbjct: 200 LFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVP----- 254

Query: 152 FVNNET------GVIQPIKEIAQIVKEYQGILVVDAVQAAG-------RIPLSIEEIKAD 198
           F  N T      G    +  IA I ++++  + VDA    G       R  L+  E +A+
Sbjct: 255 FFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIE-RAN 313

Query: 199 FLIISSHKL-GAPVGAGALVFREDILL 224
            +  + HKL GAP+   A + RE+ LL
Sbjct: 314 SVTWNPHKLMGAPLQCSAFLTREEGLL 340


>gnl|CDD|99872 cd00518, H2MP, Hydrogenase specific C-terminal endopeptidases, also
           called Hydrogen Maturation Proteases (H2MP). These
           enzymes belong to the peptidase family M52. Maturation
           of [FeNi] hydrogenases includes formation of the nickel
           metallocenter, proteolytic processing and assembly with
           other subunits. Hydrogenase maturation endopeptidases
           are responsible for the proteolytic processing,
           liberating a short C-terminal peptide by cleaving after
           a His or an Arg residue, e.g., HycI (E. coli) is
           involved in processing of HypE, the large subunit of
           hydrogenase 3. This cleavage is nickel dependent. This
           CD also includes such hydrogenase-processing proteins as
           HydD, HupW, and HoxW, as well as, proteins of the
           F420-reducing hydrogenase of methanogens (e.g., FrcD).
           Also included, is the Pyrococcus furiosus FrxA protein,
           a bifunctional endopeptidase/ sulfhydrogenase found in
           NADP-reducing hyperthermophiles.The Pyrococcus FrxA is
           not related to those found in Helicobacter pylori..
          Length = 139

 Score = 30.6 bits (70), Expect = 0.69
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 165 EIAQIVKEYQGILVVDAVQ---AAGRI-PLSIEEIKADFLIISSHKLG 208
           E+  +++    +++VDAV      G +  L  EE+ A    +S+H+LG
Sbjct: 43  ELLDLLEGADRVIIVDAVDSGGEPGTVRRLEPEELPAYLSALSTHQLG 90


>gnl|CDD|39050 KOG3846, KOG3846, KOG3846, L-kynurenine hydrolase [Amino acid
           transport and metabolism].
          Length = 465

 Score = 29.2 bits (65), Expect = 1.9
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 17/223 (7%)

Query: 5   VYLDWNATAPLLEVVRQSFVKSLDFYGNPSSV-HKEGQKTRLYIEES-RRIIADFCGAKP 62
           +YL  N+   + +  R S    LD +   +   H +G+   + I+E    ++A   GA+ 
Sbjct: 69  IYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQE 128

Query: 63  DHVVFTSSATEAANWVLTPHFYQGS---HKISIDSLYISAIEHPAVYAG----GHFPSHK 115
           + V   +S T   + +L   FY+ +    KI ++     + +H A+ +     G  P + 
Sbjct: 129 NEVAVMNSLTVNLHSLLIS-FYKPTEKRFKILLEKKAFPS-DHYAIESQCKLHGISPENS 186

Query: 116 IHKI-PVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQ 174
           + +I P   +  +  + + D +E+      I ++    V   TG    I  I     +++
Sbjct: 187 MIQIEPREGEETLRTEDILDTIEKNGDE--IALVCFSGVQYYTGQYFDIGAITF-AGQFK 243

Query: 175 GILV-VDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGAL 216
           G LV  D   A G +PL + +   DF    S+K     GAG +
Sbjct: 244 GCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLN-AGAGGI 285


>gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
           transport and metabolism].
          Length = 557

 Score = 28.7 bits (64), Expect = 2.7
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 31/195 (15%)

Query: 26  SLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQ 85
            LD   +P    KE Q+          + A   GA  DH  F  + T  AN  +      
Sbjct: 61  ELDSLLDPEGPIKEAQE----------LAARVFGA--DHTYFVVNGTSTANKAVINAVLT 108

Query: 86  GSHKISIDSLYISAIEHPAVYAGGH---FPSHKIHKIPVLSKGIVDIQALT-DFLEQRNS 141
              K+ +D     +I H  + AG         +     ++  G + ++      L   ++
Sbjct: 109 PGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGII--GGIPLETFKEALLAHPDA 166

Query: 142 TCGIPMIAVMFVNNET--GVIQPIKEIAQIVKEYQGILVVDAVQAA-----GRIPLSIEE 194
                      + N T  GV   +++I +++  Y   ++ D    A       +P S   
Sbjct: 167 EKLA------VITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALN 220

Query: 195 IKADFLIISSHKLGA 209
             ADF+  S+HKL A
Sbjct: 221 GGADFVTQSTHKLLA 235


>gnl|CDD|73216 cd00578, L-fuc_L-ara-isomerases, L-fucose isomerase (FucIase) and
           L-arabinose isomerase (AI) family; composed of FucIase,
           AI and similar proteins. FucIase converts L-fucose, an
           aldohexose, to its ketose form, which prepares it for
           aldol cleavage (similar to the isomerization of glucose
           in glycolysis). L-fucose (or 6-deoxy-L-galactose) is
           found in various oligo- and polysaccharides in mammals,
           bacteria and plants. AI catalyzes the isomerization of
           L-arabinose to L-ribulose, the first reaction in its
           conversion to D-xylulose-5-phosphate, an intermediate in
           the pentose phosphate pathway, which allows L-arabinose
           to be used as a carbon source. AI can also convert
           D-galactose to D-tagatose at elevated temperatures in
           the presence of divalent metal ions. D-tagatose, rarely
           found in nature, is of commercial interest as a
           low-calorie sugar substitute..
          Length = 452

 Score = 28.3 bits (63), Expect = 3.4
 Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 10/129 (7%)

Query: 33  PSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISI 92
             S H  G++    +EE  R +AD     P  VV     T            + + + + 
Sbjct: 7   TGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTP-----DEARKAAEEFNE 61

Query: 93  DSLYISAIEHPAVYAGGHF--PSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAV 150
            +     I     +             + PVL       + + DF+    S CG  +   
Sbjct: 62  ANC-DGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQFNREIPDFMNLNQSACG--LREF 118

Query: 151 MFVNNETGV 159
             +    G+
Sbjct: 119 GNILARLGI 127


>gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
           acid transport and metabolism].
          Length = 404

 Score = 27.8 bits (62), Expect = 4.9
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 149 AVMF--VNNETGVIQP----IKEIAQIVKEYQGILVVDAVQAA-GR----IPLSIEEIKA 197
           AV+   +  E GVI      +K + ++  E+  +L++D VQ   GR           ++ 
Sbjct: 187 AVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEP 246

Query: 198 DFLIISSHK-LGAPVGAGALVFREDI 222
           D  I++  K LG     GA++  E+I
Sbjct: 247 D--ILTLAKALGGGFPIGAMLATEEI 270


>gnl|CDD|34444 COG4835, COG4835, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 124

 Score = 27.6 bits (61), Expect = 6.3
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 262 IQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEG 321
           I  R S++  I+D + +E  +L        ++ E ++      +  L  EV +IALD  G
Sbjct: 66  ISGRISQINQIKDRIVKEPSEL------EQEEVEGLAAPLLDMLKRLTYEVTEIALDEPG 119

Query: 322 I 322
           I
Sbjct: 120 I 120


>gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine
           transaminase K [Amino acid transport and metabolism].
          Length = 420

 Score = 27.6 bits (61), Expect = 6.9
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 51  RRIIADFCGA---KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYA 107
            +  ++F G      D V+ T+ A EA +  L      G   I  +  +   I    V A
Sbjct: 79  AKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQ-VVMA 137

Query: 108 GG--HFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIP-MIAVMFVNNETGVIQP-- 162
           GG   F   K  +  V S          D  E  +        I +   +N TG +    
Sbjct: 138 GGTPVFVPLKPKEGNVSSS-----DWTLDPEELESKITEKTKAIILNTPHNPTGKVFSRE 192

Query: 163 -IKEIAQIVKEYQGILVVDAV 182
            ++ IA++ K++  +++ D V
Sbjct: 193 ELERIAELCKKHGLLVISDEV 213


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0807    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,562,498
Number of extensions: 245271
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 56
Length of query: 383
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 287
Effective length of database: 4,189,273
Effective search space: 1202321351
Effective search space used: 1202321351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)