BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] (383 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/383 (100%), Positives = 383/383 (100%) Query: 1 MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA 60 MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA Sbjct: 1 MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA 60 Query: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP 120 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP Sbjct: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP 120 Query: 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD Sbjct: 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180 Query: 181 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA 240 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA Sbjct: 181 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA 240 Query: 241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT 300 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT Sbjct: 241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT 300 Query: 301 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS 360 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS Sbjct: 301 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS 360 Query: 361 TTQEDIDIFLNALQKIIRTSTVR 383 TTQEDIDIFLNALQKIIRTSTVR Sbjct: 361 TTQEDIDIFLNALQKIIRTSTVR 383 >gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 80.9 bits (198), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 158/356 (44%), Gaps = 47/356 (13%) Query: 48 EESRRIIADFCGAKP-DHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY 106 E++R + F A ++FT SATE+ N L + + H + D + +S +EH + Sbjct: 70 EKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDEIVLSVMEHHSNI 127 Query: 107 AGGHFPSHK----IHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP 162 +F + + +P+ ++G I + L +R +IA+ ++N G + P Sbjct: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTK-----LIAITHMSNVLGTVIP 182 Query: 163 IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDI 222 IKEI +I E ++VD Q + + +++I D+ II+ HKL P G G L +E Sbjct: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242 Query: 223 LLP-SPLLRGGDQEKGQRAGTENYAVIG----------GFAVA---AQQMVKDIQKRSSR 268 L P + G + YA + A+A A V+ I ++S Sbjct: 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS-- 300 Query: 269 VFAIRDYLEQELKKLIPNIIIYGKDAERISNTC------CFSIPFLKAEVLQIALDLEGI 322 +F+ E+EL + + + + + + ++ + F + + L + LD EGI Sbjct: 301 IFS----YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGI 356 Query: 323 AVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378 A+ AG+ C+ N +L +G D+ R S T E+ D F+ L+K I+ Sbjct: 357 AIRAGTHCA------NPLLKFLGIDS---LCRASLAMYNTYEEADKFIETLKKSIQ 403 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 144 GIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186 G P I V + + G P+ ++ +I +Y G +VVD A G Sbjct: 163 GFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%) Query: 189 PLSIEEIKADFLIISSHKLGAPVGAGALVFRE 220 P+ IEE S H + PVG G VFR+ Sbjct: 334 PIMIEE--------SPHAVNLPVGKGTTVFRD 357 >gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 163 IKEIAQIVKEYQGILVVDAVQA----AGRI-PLSIEEIKADFLIISSHKLGAPVGAGALV 217 +KE +I K+Y +L+ D V G+I + +I D L +S G + A + Sbjct: 218 LKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATL 277 Query: 218 FREDIL 223 E+I Sbjct: 278 CSEEIF 283 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 17/61 (27%) Query: 288 IIYGKDAERISNTCCFSIP----------FLKAEVLQIALDLEGIAVSAGSACSSGKIKK 337 +I+G D ERIS C I F+ AE+ ++ L L I CS +I Sbjct: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYI-------CSDERILI 53 Query: 338 N 338 N Sbjct: 54 N 54 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 29/198 (14%) Query: 121 VLSKGIVDI-QALTDFLEQRNSTCGIPMI---AVMFVNNETGVIQPIKEIAQIVKEYQGI 176 +LSK DI Q LTD + R G+ + + V +E+G ++ I + +IVK Q I Sbjct: 203 ILSKFDSDIRQGLTDVMISR----GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVI 258 Query: 177 LVVDAVQAAGRIPLSIEEIKAD---FLI-----------------ISSHKLGAPVGA-GA 215 L V I L +K D F+I IS H PV A Sbjct: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318 Query: 216 LVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDY 275 F E + +P + D A +G A Q ++ ++ F ++ + Sbjct: 319 ACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF 378 Query: 276 LEQELKKLIPNIIIYGKD 293 L + + I II++ + Sbjct: 379 LSKRFEHTIMKIIVHADN 396 >gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRN--STCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172 ++ +IP GI+ D + + S+CG+P+ + VN T Q + ++K Sbjct: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 Query: 173 YQG 175 +G Sbjct: 133 LKG 135 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,493 Number of Sequences: 1233 Number of extensions: 10023 Number of successful extensions: 37 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 10 length of query: 383 length of database: 328,796 effective HSP length: 76 effective length of query: 307 effective length of database: 235,088 effective search space: 72172016 effective search space used: 72172016 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)