Query gi|254781092|ref|YP_003065505.1| hypothetical protein CLIBASIA_04970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:35:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781092.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ddh_A Putative haloacid deha 12.7 87 0.0026 14.7 1.2 29 6-34 11-39 (85)
2 >2dg5_A Gamma-glutamyltranspep 8.3 1.1E+02 0.0033 14.2 0.5 10 15-24 75-84 (110)
3 >1t6a_A Rbstp2229 gene product 5.5 76 0.0022 15.0 -1.6 17 5-21 50-66 (79)
4 >3gde_A DNA ligase; DNA-bindin 5.4 83 0.0025 14.8 -1.4 19 8-26 83-101 (122)
5 >1xs8_A UPF0269 protein YGGX; 4.5 1.3E+02 0.004 13.8 -0.9 23 4-26 1-31 (34)
6 >2r2j_A Thioredoxin domain-con 3.5 2.4E+02 0.0072 12.6 -0.2 19 10-28 18-38 (163)
7 >2hde_A Histone deacetylase co 3.4 3.1E+02 0.0092 12.1 0.2 9 6-14 21-29 (148)
8 >1vs0_A Putative DNA ligase-li 3.1 2.5E+02 0.0073 12.6 -0.5 12 9-20 73-84 (87)
9 >1i8d_A Riboflavin synthase; r 3.0 3.4E+02 0.0099 11.9 0.0 7 8-14 71-77 (128)
10 >2cfm_A Thermostable DNA ligas 2.9 2.7E+02 0.0079 12.4 -0.5 12 9-20 86-97 (124)
No 1
>>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:20-104)
Probab=12.74 E-value=87 Score=14.73 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCHHHEEEHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 00011110101220799999963455216
Q gi|254781092|r 6 REKFCVFLILFYEGELLVKRFMHTKKKNI 34 (35)
Q Consensus 6 rekfcvflilfyegellvkrfmhtkkkni 34 (35)
.++||-.|--+-+.+-+..|...|.++|+
T Consensus 11 e~~f~~LL~~y~~~~~i~~~L~~tE~rNL 39 (85)
T 3ddh_A 11 EKQYTDLLKPYGTSKEISAALFQTEXNNL 39 (85)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999998751881889999987555566
No 2
>>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} (A:67-141,A:218-252)
Probab=8.31 E-value=1.1e+02 Score=14.24 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=7.0
Q ss_pred HHHCCHHHHH
Q ss_conf 0122079999
Q gi|254781092|r 15 LFYEGELLVK 24 (35)
Q Consensus 15 lfyegellvk 24 (35)
-||+||+--+
T Consensus 75 PFY~G~iA~~ 84 (110)
T 2dg5_A 75 PFYKGTIAEQ 84 (110)
T ss_dssp CHHTSHHHHH
T ss_pred CHHCCHHHHH
T ss_conf 7533758999
No 3
>>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} (A:48-126)
Probab=5.45 E-value=76 Score=15.02 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.4
Q ss_pred HCCHHHEEEHHHHCCHH
Q ss_conf 10001111010122079
Q gi|254781092|r 5 KREKFCVFLILFYEGEL 21 (35)
Q Consensus 5 krekfcvflilfyegel 21 (35)
|...||-||---++|||
T Consensus 50 KANEfckflAK~l~geL 66 (79)
T 1t6a_A 50 KANEFSKWLAKTLGGEL 66 (79)
T ss_dssp HHHHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHHHCEE
T ss_conf 27689999999741014
No 4
>>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} (A:254-375)
Probab=5.39 E-value=83 Score=14.83 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=14.7
Q ss_pred HHHEEEHHHHCCHHHHHHH
Q ss_conf 0111101012207999999
Q gi|254781092|r 8 KFCVFLILFYEGELLVKRF 26 (35)
Q Consensus 8 kfcvflilfyegellvkrf 26 (35)
.|.+|=||++.|+++-.-+
T Consensus 83 ~~~vFDiL~l~g~~l~~pl 101 (122)
T 3gde_A 83 EAHFFDILYHDGECIDLPL 101 (122)
T ss_dssp EEEEEEEEEESSBCTTSBH
T ss_pred EEEECCHHHCCCCCCCCCH
T ss_conf 8861311313982014639
No 5
>>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} (A:1-34)
Probab=4.53 E-value=1.3e+02 Score=13.84 Aligned_cols=23 Identities=39% Similarity=0.771 Sum_probs=13.9
Q ss_pred HHCCHHHEEEHH--------HHCCHHHHHHH
Q ss_conf 010001111010--------12207999999
Q gi|254781092|r 4 MKREKFCVFLIL--------FYEGELLVKRF 26 (35)
Q Consensus 4 mkrekfcvflil--------fyegellvkrf 26 (35)
|.|--||++|-- -|.|||=-+-|
T Consensus 1 M~R~V~C~kl~ke~eGLd~~PyPG~lG~rI~ 31 (34)
T 1xs8_A 1 MSRTIFCTYLQRDAEGQDFQLYPGELGKRIY 31 (34)
T ss_dssp CCCEEECTTTSSEEEBCCCCSSCSHHHHHHH
T ss_pred CCCEEEEHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9835630862882768889999948889999
No 6
>>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, stress response; 2.60A {Homo sapiens} (A:220-382)
Probab=3.52 E-value=2.4e+02 Score=12.58 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=11.7
Q ss_pred HEEEHHHHCCH--HHHHHHHH
Q ss_conf 11101012207--99999963
Q gi|254781092|r 10 CVFLILFYEGE--LLVKRFMH 28 (35)
Q Consensus 10 cvflilfyege--llvkrfmh 28 (35)
--||||||.-+ --+|+|..
T Consensus 18 lPfliLF~~pdD~~svk~F~~ 38 (163)
T 2r2j_A 18 LPFLILFHXKEDTESLEIFQN 38 (163)
T ss_dssp CCEEEEEECTTCCHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHH
T ss_conf 868999996751346899999
No 7
>>2hde_A Histone deacetylase complex subunit SAP18; HDAC, SIN3, GLI, bicoid, GAGA, transcriptional repressor; NMR {Homo sapiens} (A:)
Probab=3.38 E-value=3.1e+02 Score=12.09 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=0.0
Q ss_pred CCHHHEEEH
Q ss_conf 000111101
Q gi|254781092|r 6 REKFCVFLI 14 (35)
Q Consensus 6 rekfcvfli 14 (35)
|||-|-||+
T Consensus 21 RektcPfLL 29 (148)
T 2hde_A 21 REKTSPLLL 29 (148)
T ss_dssp TTTCCCEEE
T ss_pred CCCCCCEEE
T ss_conf 335786377
No 8
>>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomics, PSI; HET: APK MSE; 2.40A {Mycobacterium tuberculosis H37RV} (A:35-121)
Probab=3.10 E-value=2.5e+02 Score=12.56 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=0.0
Q ss_pred HHEEEHHHHCCH
Q ss_conf 111101012207
Q gi|254781092|r 9 FCVFLILFYEGE 20 (35)
Q Consensus 9 fcvflilfyege 20 (35)
|++|=||++.|+
T Consensus 73 ~~~FDiL~l~g~ 84 (87)
T 1vs0_A 73 FWAFDLLYLDGR 84 (87)
T ss_dssp EEEEEEEEETTE
T ss_pred EEEEEEECCCHH
T ss_conf 999988502605
No 9
>>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213)
Probab=2.98 E-value=3.4e+02 Score=11.93 Aligned_cols=7 Identities=71% Similarity=1.545 Sum_probs=0.0
Q ss_pred HHHEEEH
Q ss_conf 0111101
Q gi|254781092|r 8 KFCVFLI 14 (35)
Q Consensus 8 kfcvfli 14 (35)
.|||.||
T Consensus 71 ~~~~~~~ 77 (128)
T 1i8d_A 71 RFCVHLI 77 (128)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 8999981
No 10
>>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} (A:251-374)
Probab=2.91 E-value=2.7e+02 Score=12.40 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=0.0
Q ss_pred HHEEEHHHHCCH
Q ss_conf 111101012207
Q gi|254781092|r 9 FCVFLILFYEGE 20 (35)
Q Consensus 9 fcvflilfyege 20 (35)
|++|=||++.|+
T Consensus 86 ~~vFDiL~l~g~ 97 (124)
T 2cfm_A 86 LNLFDVLYVDGQ 97 (124)
T ss_dssp EEEEEEEEETTE
T ss_pred EEEEEEHHHCCC
T ss_conf 467521321884
Done!