HHsearch alignment for GI: 254781093 and conserved domain: COG1770
>COG1770 PtrB Protease II [Amino acid transport and metabolism].
Probab=99.11 E-value=4.9e-09 Score=74.41 Aligned_cols=200 Identities=21% Similarity=0.202 Sum_probs=135.1
Q ss_pred EEECCCCC-E--EEEEEECC--CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC-CC
Q ss_conf 89658996-1--87999668--8877879999578998888998999999999999739849998531558876778-52
Q gi|254781093|r 4 VVFNGPSG-R--LEGRYQPS--TNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVSLRFNFRGIGRSEGEF-DY 77 (225)
Q Consensus 4 v~i~g~~G-~--l~~~~~~~--~~~~~~~vv~~Hp~p~~GG~~~~~~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~-~~ 77 (225)
T Consensus 422 iwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLy--gYGaYG~s~~p-~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~ 498 (682)
T COG1770 422 IWATADDGVQVPVSLVYRKDTKLDGSAPLLLY--GYGAYGISMDP-SFSIARLSLLDRGFVYAIAHVRGGGELGRAWYED 498 (682)
T ss_pred EEEECCCCEEEEEEEEEECCCCCCCCCCEEEE--EECCCCCCCCC-CCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHH
T ss_conf 98875898084179999415667899857999--95345655786-6441242200172699999950664347578873
Q ss_pred CCHH-----HHHHHHHHHHHHHHC-CCCCCEEEEEECHHHHHHHHHHHCCCC-HHEEEECCCCCCCCCC-----------
Q ss_conf 1023-----899999899998623-546740588872036878764503862-1330122757443332-----------
Q gi|254781093|r 78 GDGE-----LSDAAAALDWVQSLN-PESKSCWIAGYSFGAWISMQLLMRRPE-INGFISVAPQPKSYDF----------- 139 (225)
Q Consensus 78 g~~E-----~~D~~aa~~~l~~~~-~~~~~i~l~G~S~Gg~val~~a~~~p~-i~~~v~isp~~~~~~~----------- 139 (225)
T Consensus 499 GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~ 578 (682)
T COG1770 499 GKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVT 578 (682)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHEEECCCCCCHHHHHCCCCCCCCCC
T ss_conf 44553336478899999999971767824158963572348999998618465431243277333123203877898852
Q ss_pred -----------------------CCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCC-CC
Q ss_conf -----------------------2234334-773776168655028999999999986077996--07999787984-75
Q gi|254781093|r 140 -----------------------SFLAPCP-SSGLIINGSNDTVATTSDVKDLVNKLMNQKGIS--ITHKVIPDANH-FF 192 (225)
Q Consensus 140 -----------------------~~l~~~~-~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~--~~~~~i~ga~H-~f 192 (225)
T Consensus 579 E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 579 EWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred CHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 03430797778899998625933214557888368970345786145207899998764136897179984134657877
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 58589999999999
Q gi|254781093|r 193 IGKVDELINECAHY 206 (225)
Q Consensus 193 ~~~~~~l~~~i~~f 206 (225)
T Consensus 659 SgRf~~lee~A~eY 672 (682)
T COG1770 659 SGRFQRLEEIAFEY 672 (682)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 87368899999998