HHsearch alignment for GI: 254781093 and conserved domain: TIGR01836
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=98.86 E-value=1e-08 Score=72.45 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=112.8
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--CHHHHH-----HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHC
Q ss_conf 9999999739849998531558876778521--023899-----999899998623546740588872036878764503
Q gi|254781093|r 48 QLFYLFQQRGFVSLRFNFRGIGRSEGEFDYG--DGELSD-----AAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR 120 (225)
Q Consensus 48 ~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g--~~E~~D-----~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~ 120 (225)
T Consensus 94 Slv~~LL~~G~DVYLiDW-------GyP~~~D~~ltLdDY~~~YI~~cV~~i~~~~-~~d~i~lLG~CqGGTfsL~yAaL 165 (367)
T TIGR01836 94 SLVRGLLERGQDVYLIDW-------GYPDRADRYLTLDDYVNGYIDKCVDYICRTS-KLDQISLLGICQGGTFSLCYAAL 165 (367)
T ss_pred HHHHHHHHCCCCEEEEEC-------CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCHHHHHHHHHH
T ss_conf 688888856984899606-------8987333114046667677899999998650-78961043143104789999972
Q ss_pred CC-C-HHEEEECCCCCCCCCC--------------------------------------C--------------------
Q ss_conf 86-2-1330122757443332--------------------------------------2--------------------
Q gi|254781093|r 121 RP-E-INGFISVAPQPKSYDF--------------------------------------S-------------------- 140 (225)
Q Consensus 121 ~p-~-i~~~v~isp~~~~~~~--------------------------------------~-------------------- 140 (225)
T Consensus 166 ~~~kPiKNLvtMv~PVDF~~p~~~l~~~~GCtlGa~~~DiDl~VdtmGNiP~elln~~flmLKPf~l~~qKY~~L~d~~~ 245 (367)
T TIGR01836 166 YPDKPIKNLVTMVTPVDFETPGNLLSNWDGCTLGARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILE 245 (367)
T ss_pred CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCEECHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCC
T ss_conf 50478322178726625658733765416731001121255677520687677886575521511206897301021026
Q ss_pred ---------------------------------------------------CCCCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf ---------------------------------------------------23433477377616865502899999999
Q gi|254781093|r 141 ---------------------------------------------------FLAPCPSSGLIINGSNDTVATTSDVKDLV 169 (225)
Q Consensus 141 ---------------------------------------------------~l~~~~~p~LiIhG~~D~~vp~~~~~~~~ 169 (225)
T Consensus 246 D~~~v~nFlRMEKWifDsPd~AGEafRQf~kdFYQ~N~li~G~~~iGg~~vdL~Ni~~PvLNiyA~~DHLV~P~~S~aL~ 325 (367)
T TIGR01836 246 DESKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPVLNIYAERDHLVPPDASKALN 325 (367)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEECEEEECCEEECCEECCCCHHHHHHCCCCCCCCHHHHHHC
T ss_conf 85898626555223217888321358999999987166142407986545321225655125643347755516999745
Q ss_pred HHHHHCCCCCEEEEEECCCCC---CCCCC-HHHHHHHHHHHHHHH
Q ss_conf 998607799607999787984---75585-899999999999973
Q gi|254781093|r 170 NKLMNQKGISITHKVIPDANH---FFIGK-VDELINECAHYLDNS 210 (225)
Q Consensus 170 ~~l~~~~~~~~~~~~i~ga~H---~f~~~-~~~l~~~i~~fl~~~ 210 (225)
T Consensus 326 ~~v~s--n~Dyt~~~F~-~GHiG~yvSgkaQkev~P~Ig~WL~~R 367 (367)
T TIGR01836 326 DLVSS--NEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQER 367 (367)
T ss_pred CCCCC--CCCCEECCCC-CCEEEEEECCEEEECCCHHHHHHHHCC
T ss_conf 67543--3662100479-843899977853313682688885139