HHsearch alignment for GI: 254781093 and conserved domain: TIGR01836

>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=98.86  E-value=1e-08  Score=72.45  Aligned_cols=152  Identities=17%  Similarity=0.180  Sum_probs=112.8

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--CHHHHH-----HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHC
Q ss_conf             9999999739849998531558876778521--023899-----999899998623546740588872036878764503
Q gi|254781093|r   48 QLFYLFQQRGFVSLRFNFRGIGRSEGEFDYG--DGELSD-----AAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR  120 (225)
Q Consensus        48 ~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g--~~E~~D-----~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~  120 (225)
T Consensus        94 Slv~~LL~~G~DVYLiDW-------GyP~~~D~~ltLdDY~~~YI~~cV~~i~~~~-~~d~i~lLG~CqGGTfsL~yAaL  165 (367)
T TIGR01836        94 SLVRGLLERGQDVYLIDW-------GYPDRADRYLTLDDYVNGYIDKCVDYICRTS-KLDQISLLGICQGGTFSLCYAAL  165 (367)
T ss_pred             HHHHHHHHCCCCEEEEEC-------CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCHHHHHHHHHH
T ss_conf             688888856984899606-------8987333114046667677899999998650-78961043143104789999972


Q ss_pred             CC-C-HHEEEECCCCCCCCCC--------------------------------------C--------------------
Q ss_conf             86-2-1330122757443332--------------------------------------2--------------------
Q gi|254781093|r  121 RP-E-INGFISVAPQPKSYDF--------------------------------------S--------------------  140 (225)
Q Consensus       121 ~p-~-i~~~v~isp~~~~~~~--------------------------------------~--------------------  140 (225)
T Consensus       166 ~~~kPiKNLvtMv~PVDF~~p~~~l~~~~GCtlGa~~~DiDl~VdtmGNiP~elln~~flmLKPf~l~~qKY~~L~d~~~  245 (367)
T TIGR01836       166 YPDKPIKNLVTMVTPVDFETPGNLLSNWDGCTLGARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILE  245 (367)
T ss_pred             CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCEECHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCC
T ss_conf             50478322178726625658733765416731001121255677520687677886575521511206897301021026


Q ss_pred             ---------------------------------------------------CCCCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             ---------------------------------------------------23433477377616865502899999999
Q gi|254781093|r  141 ---------------------------------------------------FLAPCPSSGLIINGSNDTVATTSDVKDLV  169 (225)
Q Consensus       141 ---------------------------------------------------~l~~~~~p~LiIhG~~D~~vp~~~~~~~~  169 (225)
T Consensus       246 D~~~v~nFlRMEKWifDsPd~AGEafRQf~kdFYQ~N~li~G~~~iGg~~vdL~Ni~~PvLNiyA~~DHLV~P~~S~aL~  325 (367)
T TIGR01836       246 DESKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPVLNIYAERDHLVPPDASKALN  325 (367)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEECEEEECCEEECCEECCCCHHHHHHCCCCCCCCHHHHHHC
T ss_conf             85898626555223217888321358999999987166142407986545321225655125643347755516999745


Q ss_pred             HHHHHCCCCCEEEEEECCCCC---CCCCC-HHHHHHHHHHHHHHH
Q ss_conf             998607799607999787984---75585-899999999999973
Q gi|254781093|r  170 NKLMNQKGISITHKVIPDANH---FFIGK-VDELINECAHYLDNS  210 (225)
Q Consensus       170 ~~l~~~~~~~~~~~~i~ga~H---~f~~~-~~~l~~~i~~fl~~~  210 (225)
T Consensus       326 ~~v~s--n~Dyt~~~F~-~GHiG~yvSgkaQkev~P~Ig~WL~~R  367 (367)
T TIGR01836       326 DLVSS--NEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQER  367 (367)
T ss_pred             CCCCC--CCCCEECCCC-CCEEEEEECCEEEECCCHHHHHHHHCC
T ss_conf             67543--3662100479-843899977853313682688885139