HHsearch alignment for GI: 254781093 and conserved domain: pfam03096
>pfam03096 Ndr Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (su
Probab=99.56 E-value=1.3e-12 Score=95.96 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=128.2
Q ss_pred EEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCHH-HHHH-----HHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 896589961879996688877879999578998888998999-9999-----9999973984999853155887677852
Q gi|254781093|r 4 VVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNI-VYQL-----FYLFQQRGFVSLRFNFRGIGRSEGEFDY 77 (225)
Q Consensus 4 v~i~g~~G~l~~~~~~~~~~~~~~vv~~Hp~p~~GG~~~~~~-~~~l-----a~~l~~~G~~vl~fd~RG~G~S~G~~~~ 77 (225)
T Consensus 2 ~~v~t~~G~~~v~v~g~~~~~kp~~~t~h---dlg~n--~~s~f~~~f~~~~~~~l~-~~f~v~~iD~pGh~~ga~~~~~ 75 (285)
T pfam03096 2 HIIETPCGSVHVTVYGDPEGKKPPILTYH---DLGLN--HKSCFQGLFNSESMQEIL-ENFCIYHVDAPGQEDGAASFPG 75 (285)
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEEC---CCCCC--HHHHHHHHHCCHHHHHHH-HCCEEEEECCCCCCCCCCCCCC
T ss_conf 75547985189999806789988799857---76546--287756530657689987-4267999628987789998998
Q ss_pred CC-----HH-HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCC-HHEEEECCCCCCCCCC-----------
Q ss_conf 10-----23-899999899998623546740588872036878764503862-1330122757443332-----------
Q gi|254781093|r 78 GD-----GE-LSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMRRPE-INGFISVAPQPKSYDF----------- 139 (225)
Q Consensus 78 g~-----~E-~~D~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~~p~-i~~~v~isp~~~~~~~----------- 139 (225)
T Consensus 76 ~~~~ps~~~la~~l~~vld~l-----~i~~~~~~G~s~G~~i~~~fA~~~p~rv~~LvLi~~~~~~~~w~Ew~~~k~~~~ 150 (285)
T pfam03096 76 GYPYPSMDDLADMLPVVLDHF-----RLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSSK 150 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----CCCEEEEEEECHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 888878999999999999971-----987699984367889999999869676105799657877767789999999887
Q ss_pred --------------------C--------------------------------------CCC------CCCCCEEEEECC
Q ss_conf --------------------2--------------------------------------234------334773776168
Q gi|254781093|r 140 --------------------S--------------------------------------FLA------PCPSSGLIINGS 155 (225)
Q Consensus 140 --------------------~--------------------------------------~l~------~~~~p~LiIhG~ 155 (225)
T Consensus 151 ~L~~~Gmt~~~~d~ll~h~Fg~~~~~~n~div~~~R~~l~~~~n~~nl~~fl~a~~~R~dl~~~~~~~~~~cpvLlv~Gd 230 (285)
T pfam03096 151 LLYYYGMTDSAKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLEEVCPVLLVVGD 230 (285)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 77654643789999998765766445887999999999985449899999999984777660220446877666999637
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 65502899999999998607799607999787984755-8589999999999997
Q gi|254781093|r 156 NDTVATTSDVKDLVNKLMNQKGISITHKVIPDANHFFI-GKVDELINECAHYLDN 209 (225)
Q Consensus 156 ~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H~f~-~~~~~l~~~i~~fl~~ 209 (225)
T Consensus 231 ~sp~~~--~~v~~~~~ld~~---~stllki~dcG~mv~~EqP~k~~e~i~~FLqG 280 (285)
T pfam03096 231 NSPHVD--AVVECNTKLDPT---KTTLLKVADCGGLVQQEQPGKLTESFKLFLQG 280 (285)
T ss_pred CCCCHH--HHHHHHHHCCCC---CCEEEEECCCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 882077--899998602843---22599956778861103809999999999854