HHsearch alignment for GI: 254781093 and conserved domain: pfam03096

>pfam03096 Ndr Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (su
Probab=99.56  E-value=1.3e-12  Score=95.96  Aligned_cols=190  Identities=19%  Similarity=0.265  Sum_probs=128.2

Q ss_pred             EEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCHH-HHHH-----HHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             896589961879996688877879999578998888998999-9999-----9999973984999853155887677852
Q gi|254781093|r    4 VVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNI-VYQL-----FYLFQQRGFVSLRFNFRGIGRSEGEFDY   77 (225)
Q Consensus         4 v~i~g~~G~l~~~~~~~~~~~~~~vv~~Hp~p~~GG~~~~~~-~~~l-----a~~l~~~G~~vl~fd~RG~G~S~G~~~~   77 (225)
T Consensus         2 ~~v~t~~G~~~v~v~g~~~~~kp~~~t~h---dlg~n--~~s~f~~~f~~~~~~~l~-~~f~v~~iD~pGh~~ga~~~~~   75 (285)
T pfam03096         2 HIIETPCGSVHVTVYGDPEGKKPPILTYH---DLGLN--HKSCFQGLFNSESMQEIL-ENFCIYHVDAPGQEDGAASFPG   75 (285)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCEEEEEC---CCCCC--HHHHHHHHHCCHHHHHHH-HCCEEEEECCCCCCCCCCCCCC
T ss_conf             75547985189999806789988799857---76546--287756530657689987-4267999628987789998998


Q ss_pred             CC-----HH-HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCC-HHEEEECCCCCCCCCC-----------
Q ss_conf             10-----23-899999899998623546740588872036878764503862-1330122757443332-----------
Q gi|254781093|r   78 GD-----GE-LSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMRRPE-INGFISVAPQPKSYDF-----------  139 (225)
Q Consensus        78 g~-----~E-~~D~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~~p~-i~~~v~isp~~~~~~~-----------  139 (225)
T Consensus        76 ~~~~ps~~~la~~l~~vld~l-----~i~~~~~~G~s~G~~i~~~fA~~~p~rv~~LvLi~~~~~~~~w~Ew~~~k~~~~  150 (285)
T pfam03096        76 GYPYPSMDDLADMLPVVLDHF-----RLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSSK  150 (285)
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-----CCCEEEEEEECHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             888878999999999999971-----987699984367889999999869676105799657877767789999999887


Q ss_pred             --------------------C--------------------------------------CCC------CCCCCEEEEECC
Q ss_conf             --------------------2--------------------------------------234------334773776168
Q gi|254781093|r  140 --------------------S--------------------------------------FLA------PCPSSGLIINGS  155 (225)
Q Consensus       140 --------------------~--------------------------------------~l~------~~~~p~LiIhG~  155 (225)
T Consensus       151 ~L~~~Gmt~~~~d~ll~h~Fg~~~~~~n~div~~~R~~l~~~~n~~nl~~fl~a~~~R~dl~~~~~~~~~~cpvLlv~Gd  230 (285)
T pfam03096       151 LLYYYGMTDSAKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLEEVCPVLLVVGD  230 (285)
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf             77654643789999998765766445887999999999985449899999999984777660220446877666999637


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf             65502899999999998607799607999787984755-8589999999999997
Q gi|254781093|r  156 NDTVATTSDVKDLVNKLMNQKGISITHKVIPDANHFFI-GKVDELINECAHYLDN  209 (225)
Q Consensus       156 ~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H~f~-~~~~~l~~~i~~fl~~  209 (225)
T Consensus       231 ~sp~~~--~~v~~~~~ld~~---~stllki~dcG~mv~~EqP~k~~e~i~~FLqG  280 (285)
T pfam03096       231 NSPHVD--AVVECNTKLDPT---KTTLLKVADCGGLVQQEQPGKLTESFKLFLQG  280 (285)
T ss_pred             CCCCHH--HHHHHHHHCCCC---CCEEEEECCCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf             882077--899998602843---22599956778861103809999999999854