HHsearch alignment for GI: 254781093 and conserved domain: pfam07082
>pfam07082 DUF1350 Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.44 E-value=0.04 Score=32.81 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--HH-HHHHHHHHHHHHHHC-CC--CCCEEEEEECHHHHHHHH
Q ss_conf 9999999999997398499985315588767785210--23-899999899998623-54--674058887203687876
Q gi|254781093|r 43 DNIVYQLFYLFQQRGFVSLRFNFRGIGRSEGEFDYGD--GE-LSDAAAALDWVQSLN-PE--SKSCWIAGYSFGAWISMQ 116 (225)
Q Consensus 43 ~~~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g~--~E-~~D~~aa~~~l~~~~-~~--~~~i~l~G~S~Gg~val~ 116 (225)
T Consensus 33 ~vtYr~lLe~L~~~g~~ViAtpy~~------~fDH~~iA~~v~~~F~~~~~~L~~~~g~~~~~LPv~gvGHSlGckLhLL 106 (250)
T pfam07082 33 QLTYRWLLEHLGEAGYVVIATPFVN------TFDHGAIALSVLNKFEYALERLVHRGGYPPAYLPIYGLGHSMGCKLHLL 106 (250)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHEE
T ss_conf 8899999999987896899923678------9877999999999999999999973499844475231343323165413
Q ss_pred HHHCCC-CHHEEEECC-----------------CCCCCCCCCCCCC----------CCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 450386-213301227-----------------5744333222343----------347737761686550289999999
Q gi|254781093|r 117 LLMRRP-EINGFISVA-----------------PQPKSYDFSFLAP----------CPSSGLIINGSNDTVATTSDVKDL 168 (225)
Q Consensus 117 ~a~~~p-~i~~~v~is-----------------p~~~~~~~~~l~~----------~~~p~LiIhG~~D~~vp~~~~~~~ 168 (225)
T Consensus 107 i~s~~~~~R~gniliSFNN~~A~~aIPll~~l~~~l~-~EF~PsP~ET~~li~~~Y~v~rnLLIkF~~D~ID---qt~~L 182 (250)
T pfam07082 107 IGSLYDVERAGNILMAFNNYPAKQAIPWMDNFGTALS-VEFTPSPTETNHLIQERYPVRRNLLIKFQNDDID---QTARL 182 (250)
T ss_pred ECCCCCCCCCCCEEEECCCCCHHHCCCHHHHHCCCCC-CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCHHH
T ss_conf 2234678755313543068435642725987184335-7434687999999997058866358883798854---65999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCC----C--H-HH--HHHHHHHHHHHHCCCC
Q ss_conf 99986077996079997879847558----5--8-99--9999999999731221
Q gi|254781093|r 169 VNKLMNQKGISITHKVIPDANHFFIG----K--V-DE--LINECAHYLDNSLDEK 214 (225)
Q Consensus 169 ~~~l~~~~~~~~~~~~i~ga~H~f~~----~--~-~~--l~~~i~~fl~~~L~~~ 214 (225)
T Consensus 183 ~~~L~~R~~~~~~~~~L~G-~HlTP~~q~l~wq~g~~ftP~Dai~Q~~k~~~~~d 236 (250)
T pfam07082 183 RSILRAKFGDMVTALKLPG-NHLTPLGQDLKWQTGAEFSPLDALGQWIKQSLFPD 236 (250)
T ss_pred HHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9998632468626898789-87785667767555885683488999999988779