HHsearch alignment for GI: 254781093 and conserved domain: pfam11339
>pfam11339 DUF3141 Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=98.29 E-value=9.5e-05 Score=48.61 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=102.4
Q ss_pred CCCCCEEEEEC--CC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH----HHHH
Q ss_conf 87787999957--89-98888998999999999999739849998531558876778521023899999899----9986
Q gi|254781093|r 22 NPNAPIALILH--PH-PRFGGTMNDNIVYQLFYLFQQRGFVSLRFNFRGIGRSEGEFDYGDGELSDAAAALD----WVQS 94 (225)
Q Consensus 22 ~~~~~~vv~~H--p~-p~~GG~~~~~~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g~~E~~D~~aa~~----~l~~ 94 (225)
T Consensus 66 ~~kRP~vViDPRAGHGpGIGGFK~DSeV---G-vAL~~GHPvYFV~F~p~-------P~pGQTl~DV~~Aea~Fv~~V~~ 134 (581)
T pfam11339 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEI---G-VALRAGHPCYFVGFLPD-------PEPGQTLEDVMRAEAAFLREVIE 134 (581)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCHH---H-HHHHCCCCEEEEEECCC-------CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8889859979988889987788742088---8-99866998699987469-------98988899999999999999998
Q ss_pred HCCCCCCEEEEEECHHHHHHHHHHHCCCCHHEEEECCCCCCCC----------------------------------C--
Q ss_conf 2354674058887203687876450386213301227574433----------------------------------3--
Q gi|254781093|r 95 LNPESKSCWIAGYSFGAWISMQLLMRRPEINGFISVAPQPKSY----------------------------------D-- 138 (225)
Q Consensus 95 ~~~~~~~i~l~G~S~Gg~val~~a~~~p~i~~~v~isp~~~~~----------------------------------~-- 138 (225)
T Consensus 135 ~HP~a~kP~viGNCQaGWa~~~lAA~~pdl~GPivlnGaPlSYWaG~~G~NPMRY~gGllGGsW~a~l~sDLG~G~FDGA 214 (581)
T pfam11339 135 LHPDAPKPAVIGNCQAGWALLMLAALRPDLFGPIIVAGAPLSYWAGVRGKNPMRYSGGLLGGSWLTALTSDLGNGRFDGA 214 (581)
T ss_pred HCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCEECHH
T ss_conf 48999998689416899999999852878768766648874101677789951454045310889999876169811508
Q ss_pred -----CC----------------------------------------------------------------------CCC
Q ss_conf -----22----------------------------------------------------------------------234
Q gi|254781093|r 139 -----FS----------------------------------------------------------------------FLA 143 (225)
Q Consensus 139 -----~~----------------------------------------------------------------------~l~ 143 (225)
T Consensus 215 ~LVqNFE~LNPant~W~KyY~Lya~vDtE~~RfLeFErWWgg~~~ln~~Ei~~Iv~nLFVGNrL~~g~~~~~~G~~~DLr 294 (581)
T pfam11339 215 WLVQNFENLNPANTLWGKYYNLYAKVDTEAPRFLEFERWWGGHVLLNGEEIQWIVDNLFVGNRLATGELRTSDGRRIDLR 294 (581)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEHH
T ss_conf 99866550590156788765665326764244444766518514327999999998753024003582563899575343
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHH-------HHHHCCCCCEEEEEECCCCCC
Q ss_conf 334773776168655028999999999-------986077996079997879847
Q gi|254781093|r 144 PCPSSGLIINGSNDTVATTSDVKDLVN-------KLMNQKGISITHKVIPDANHF 191 (225)
Q Consensus 144 ~~~~p~LiIhG~~D~~vp~~~~~~~~~-------~l~~~~~~~~~~~~i~ga~H~ 191 (225)
T Consensus 295 ~IrsPIvvFaS~GDNITPPqQAL~WI~dlY~~~~ei~-a~gQ~IVY~~H~~vGHL 348 (581)
T pfam11339 295 NIRSPIVVFCSYGDNITPPQQALNWIADLYADVEEIR-AHGQTIVYCVHESVGHL 348 (581)
T ss_pred HCCCCEEEEECCCCCCCCCHHHHCCHHHHCCCHHHHH-HCCCEEEEEECCCCCCE
T ss_conf 2678889993368889996577562887648999998-58987999856987736