HHsearch alignment for GI: 254781094 and conserved domain: TIGR03319
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=97.90 E-value=0.00015 Score=50.27 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=123.4
Q ss_pred HHHHHHHCCCEECCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCC
Q ss_conf 99988853982146667887887440898468883077771289899999998400113655368861324898505776
Q gi|254781094|r 232 AHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLANCFILVSNIQA 311 (702)
Q Consensus 232 i~~~a~~~~~~~~~d~~Ll~Ev~~LvE~P~~~~G~F~~~fL~lP~evl~~~m~~hQkyf~~~~~~g~l~~~Fi~v~N~~~ 311 (702)
T Consensus 227 IRa~E~~TGVDlIIDDt----------Pe~V~lS~Fdpv----RREiAr~aLe~------Li-~DGRIhP~rI------- 278 (514)
T TIGR03319 227 IRALETLTGVDLIIDDT----------PEAVILSGFDPV----RREIARMALEK------LI-QDGRIHPARI------- 278 (514)
T ss_pred HHHHHHHHCCEEEECCC----------CCEEEEECCCHH----HHHHHHHHHHH------HH-HCCCCCHHHH-------
T ss_conf 99999986974898599----------985888678868----89999999999------98-7499488999-------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHH-HHHHHH
Q ss_conf 5543024567889978764225999850300011111111110011220137889988421002303134551-389989
Q gi|254781094|r 312 SDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIG-TQGERV 390 (702)
Q Consensus 312 ~~~~~~v~~GnerVl~ARL~DA~FF~~~D~~~~~~~~~~~~~~~~~~~dlk~~L~~~~~~L~~~~v~F~~~LG-s~~dK~ 390 (702)
T Consensus 279 Ee~v~k~~~e~~~~i~~~Ge~a~~elgi~-------------------~~~peli~~lGrlk-----yRtSygQNvL~Hs 334 (514)
T TIGR03319 279 EEMVEKATKEVDNAIREEGEQAAFDLGVH-------------------GLHPELIKLLGRLK-----FRTSYGQNVLQHS 334 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------CCCHHHHHHHHHEE-----HHHHCCHHHHHHH
T ss_conf 99999999999999999999999981999-------------------99978999987500-----0102405899999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999988652999889999999742367888984034578999999986236998899999997344776777886
Q gi|254781094|r 391 SRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPT 470 (702)
Q Consensus 391 ~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~ 470 (702)
T Consensus 335 ~Eva~lag~~A~Elg~d~~~AkRaglLH--DIGKa~d~e~egsH~~iG~~~a~k~~e~~~vinai~~HH-----~~~~~~ 407 (514)
T TIGR03319 335 IEVAHLAGIMAAELGEDVKLAKRAGLLH--DIGKAVDHEVEGSHVEIGAELAKKYKESPEVVNAIAAHH-----GDVEPT 407 (514)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-----CCCCCC
T ss_conf 9999999999998399999999998765--201456765799779999999998498889999999817-----877866
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 3588999999749
Q gi|254781094|r 471 NKISITVSLADKL 483 (702)
Q Consensus 471 ~~~g~ilsiaDKl 483 (702)
T Consensus 408 ~~~a~lv~aaDai 420 (514)
T TIGR03319 408 SIEAVLVAAADAL 420 (514)
T ss_pred CHHHHHHHHHHHH
T ss_conf 6088999999998