HHsearch alignment for GI: 254781094 and conserved domain: cd07956
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.20 E-value=2.9e-05 Score=55.12 Aligned_cols=114 Identities=16% Similarity=0.275 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95138899999999998556531246777773856835989999999999999999998502538999999985327888
Q gi|254781094|r 583 SAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIE 662 (702)
Q Consensus 583 ~~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id 662 (702)
T Consensus 33 gnt~~YiQYa~aR~~SIl~k~~~~~~-~~~~~~~~~l~~~~e~~Li~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~ 111 (156)
T cd07956 33 GDTGPYLQYAHARLCSILRKAGETIE-AEADADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFS 111 (156)
T ss_pred CCCCEEHHHHHHHHHHHHHHCCCCCC-CCCCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89851124899999999997245453-32225420049989999999996572899999997070699999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 75102703688689999999999999999986068
Q gi|254781094|r 663 IFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 (702)
Q Consensus 663 ~FFDnVmVm~eD~~IR~NRL~LL~~i~~~f~~iaD 697 (702)
T Consensus 112 ~fY~~~~Ii~~~~~~~~~RL~L~~a~~~vL~~gL~ 146 (156)
T cd07956 112 KFYNACPVLGAEEELRNARLALVAAARQVLANGLD 146 (156)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99974988789889999999999999999999865