HHsearch alignment for GI: 254781094 and conserved domain: pfam05746
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=98.65 E-value=4.8e-07 Score=67.33 Aligned_cols=105 Identities=25% Similarity=0.411 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999855653124677777385683598999999999999999999850253899999998532788875102703
Q gi|254781094|r 591 LSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVLV 670 (702)
Q Consensus 591 ~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnVmV 670 (702)
T Consensus 3 Ya~aRi~SIl~k~~~~~--~~~~~~~~~~~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~I 80 (117)
T pfam05746 3 YAHARICSILRKAGELG--INLDIDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNCRV 80 (117)
T ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88999999998467667--7655430012999999999988052999999998668699999999999999999971967
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 688689999999999999999986068
Q gi|254781094|r 671 NVDDREVRDNRLSLLQYIKNIILIVIN 697 (702)
Q Consensus 671 m~eD~~IR~NRL~LL~~i~~~f~~iaD 697 (702)
T Consensus 81 l~~~~~~~~~RL~L~~~~~~vl~~gl~ 107 (117)
T pfam05746 81 LDEDDEERNARLALLKAVRQVLKNGLD 107 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 489889999999999999999999978