HHsearch alignment for GI: 254781094 and conserved domain: pfam05746

>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=98.65  E-value=4.8e-07  Score=67.33  Aligned_cols=105  Identities=25%  Similarity=0.411  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999855653124677777385683598999999999999999999850253899999998532788875102703
Q gi|254781094|r  591 LSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVLV  670 (702)
Q Consensus       591 ~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnVmV  670 (702)
T Consensus         3 Ya~aRi~SIl~k~~~~~--~~~~~~~~~~~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~I   80 (117)
T pfam05746         3 YAHARICSILRKAGELG--INLDIDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNCRV   80 (117)
T ss_pred             HHHHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88999999998467667--7655430012999999999988052999999998668699999999999999999971967


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             688689999999999999999986068
Q gi|254781094|r  671 NVDDREVRDNRLSLLQYIKNIILIVIN  697 (702)
Q Consensus       671 m~eD~~IR~NRL~LL~~i~~~f~~iaD  697 (702)
T Consensus        81 l~~~~~~~~~RL~L~~~~~~vl~~gl~  107 (117)
T pfam05746        81 LDEDDEERNARLALLKAVRQVLKNGLD  107 (117)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             489889999999999999999999978