Query gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 702
No_of_seqs 174 out of 1458
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 22:52:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781094.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zue_A Arginyl-tRNA synthetas 99.6 6.7E-15 2E-19 120.6 10.5 120 582-701 23-146 (152)
2 >1f7u_A Arginyl-tRNA synthetas 99.4 2.6E-12 7.8E-17 102.9 10.3 102 596-701 9-110 (116)
3 >3gw7_A Uncharacterized protei 98.9 5.8E-10 1.7E-14 86.8 2.7 120 361-485 3-131 (131)
4 >3hc1_A Uncharacterized HDOD d 98.9 4.2E-07 1.2E-11 67.3 15.9 146 377-524 25-197 (220)
5 >3dto_A BH2835 protein; all al 98.6 4.2E-08 1.2E-12 74.1 5.0 116 366-485 8-126 (126)
6 >3djb_A Hydrolase, HD family; 98.2 6.2E-06 1.8E-10 59.3 7.7 104 378-484 18-125 (126)
7 >3b57_A LIN1889 protein; Q92AN 97.7 0.0018 5.3E-08 42.5 12.3 183 364-552 5-202 (209)
8 >3i7a_A Putative metal-depende 97.5 0.0036 1.1E-07 40.4 11.4 110 378-490 28-160 (199)
9 >2qgs_A Protein Se1688; alpha- 97.4 0.00091 2.7E-08 44.5 8.3 118 365-486 6-128 (128)
10 >2o08_A BH1327 protein; NP_242 97.3 0.0014 4.1E-08 43.2 8.0 104 378-486 11-133 (134)
11 >2pq7_A Predicted HD superfami 97.1 0.0069 2E-07 38.5 10.0 114 378-491 25-142 (220)
12 >3fnr_A Arginyl-tRNA synthetas 97.0 0.017 5.2E-07 35.7 10.7 108 586-697 30-137 (157)
13 >2ogi_A Hypothetical protein S 95.7 0.11 3.4E-06 30.1 9.1 106 379-488 20-143 (159)
14 >3ccg_A HD superfamily hydrola 95.5 0.14 4.2E-06 29.4 8.8 99 381-484 15-133 (135)
15 >1vqr_A Hypothetical protein C 95.4 0.19 5.7E-06 28.6 12.3 140 378-530 117-283 (297)
16 >2pjq_A Uncharacterized protei 95.1 0.18 5.3E-06 28.7 8.3 107 379-487 24-134 (231)
17 >2paq_A 5'-deoxynucleotidase Y 94.3 0.21 6.4E-06 28.2 7.0 120 365-491 8-149 (201)
18 >3kh1_A Predicted metal-depend 92.1 0.8 2.4E-05 24.3 7.8 115 375-493 7-131 (178)
19 >2zze_A Alanyl-tRNA synthetase 89.5 1.2 3.5E-05 23.2 6.1 60 472-531 68-127 (160)
20 >1iq0_A Arginyl-tRNA synthetas 89.1 1.4 4.3E-05 22.6 10.8 108 584-697 85-199 (209)
21 >1rqg_A Methionyl-tRNA synthet 88.3 1.6 4.8E-05 22.2 13.4 104 589-698 3-110 (137)
22 >1xx7_A Oxetanocin-like protei 80.8 2 6E-05 21.6 3.8 103 385-493 9-116 (156)
23 >1ynb_A Hypothetical protein A 79.2 3.9 0.00012 19.6 8.3 109 383-504 36-145 (173)
24 >2ztg_A Alanyl-tRNA synthetase 74.1 5.3 0.00016 18.7 7.3 60 472-531 73-132 (163)
25 >2dqb_A Deoxyguanosinetriphosp 73.0 5.7 0.00017 18.5 11.4 124 362-487 25-176 (282)
26 >2d5b_A Methionyl-tRNA synthet 59.4 10 0.0003 16.8 3.8 88 592-690 5-95 (149)
27 >1u6z_A Exopolyphosphatase; al 56.3 11 0.00033 16.5 3.2 108 380-488 11-138 (139)
28 >1i7d_A DNA topoisomerase III; 46.1 16 0.00049 15.3 3.9 68 430-497 4-75 (140)
29 >3e3v_A Regulatory protein REC 45.8 17 0.00049 15.3 3.3 27 536-562 27-53 (68)
30 >2cqz_A 177AA long hypothetica 45.4 2.3 6.7E-05 21.2 -1.8 97 385-491 10-115 (131)
31 >2kih_A Matrix protein 2; S31N 41.0 20 0.00058 14.8 2.4 22 496-517 2-23 (43)
32 >3h99_A Methionyl-tRNA synthet 34.2 25 0.00073 14.1 7.4 68 621-688 24-96 (143)
33 >3e3v_A Regulatory protein REC 29.6 25 0.00074 14.1 1.5 21 541-561 37-57 (64)
34 >1mw9_X DNA topoisomerase I; d 29.2 30 0.00088 13.6 3.4 110 430-546 4-120 (139)
35 >1abv_A Delta subunit of the F 28.0 13 0.00037 16.1 -0.3 92 506-600 8-102 (134)
36 >2nyc_A Nuclear protein SNF4; 27.9 31 0.00093 13.4 3.0 26 276-301 16-41 (74)
37 >2aaa_A Alpha-amylase; glycosi 27.8 24 0.0007 14.3 1.1 89 470-558 36-152 (290)
38 >2oux_A Magnesium transporter; 26.4 33 0.00099 13.2 3.0 27 275-301 18-44 (84)
39 >2b0t_A NADP isocitrate dehydr 26.3 17 0.00052 15.2 0.2 351 9-443 8-436 (460)
40 >2yzq_A Putative uncharacteriz 26.0 34 0.001 13.2 2.7 32 276-308 38-69 (79)
41 >3e3v_A Regulatory protein REC 25.1 35 0.001 13.1 2.8 22 540-561 23-44 (45)
42 >3hy0_A Alanyl-tRNA synthetase 23.6 37 0.0011 12.9 5.4 57 473-529 25-82 (116)
43 >3bkd_A Transmembrane domain o 23.5 37 0.0011 12.9 2.5 19 499-517 1-19 (26)
44 >2yzq_A Putative uncharacteriz 23.4 38 0.0011 12.9 2.4 34 276-310 20-53 (77)
45 >1wz2_A Leucyl-tRNA synthetase 23.4 38 0.0011 12.9 11.7 107 582-694 23-133 (156)
46 >2csx_A Methionyl-tRNA synthet 22.8 39 0.0011 12.8 10.5 94 591-695 5-103 (149)
47 >2gai_A DNA topoisomerase I; z 21.9 40 0.0012 12.7 3.1 54 430-483 4-68 (148)
48 >1dpe_A Dipeptide-binding prot 21.8 40 0.0012 12.7 2.7 32 206-237 27-58 (60)
49 >1j09_A Glutamyl-tRNA syntheta 21.8 38 0.0011 12.8 1.2 20 392-411 43-62 (100)
50 >1itw_A Isocitrate dehydrogena 21.1 21 0.00063 14.6 -0.2 86 5-94 6-108 (463)
51 >1xsz_A Guanine nucleotide exc 20.9 24 0.00071 14.2 0.0 12 331-342 5-16 (47)
52 >1vs0_A Putative DNA ligase-li 20.8 42 0.0013 12.5 3.3 77 105-196 32-108 (121)
No 1
>>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A (A:92-112,A:499-629)
Probab=99.61 E-value=6.7e-15 Score=120.61 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 19513889999999999855653124677----77738568359899999999999999999985025389999999853
Q gi|254781094|r 582 SSAKGEKFLLSAKRIFQILAIEEKKNREI----SLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSI 657 (702)
Q Consensus 582 ~~~~~~~l~~a~KRv~NIL~~~~k~~~~~----~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L 657 (702)
+.+.+..+.-+|+|+.||+.+........ ..++|.++|.+++|++|+..+..+...+..+.+..+|..++..|.+|
T Consensus 23 ~~n~g~yIqYa~aRi~sIlrK~~~~~~~~~~~~~~~~d~~ll~~~~E~~L~~~l~~~~~~i~~a~~~~~p~~l~~~L~~L 102 (152)
T 2zue_A 23 EGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANEL 102 (152)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 68985216689999999999866406788855642143343499999999999986899999999969808999999999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHC
Q ss_conf 27888751027036886899999999999999999860684521
Q gi|254781094|r 658 CEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKI 701 (702)
Q Consensus 658 ~~~Id~FFDnVmVm~eD~~IR~NRL~LL~~i~~~f~~iaDfs~L 701 (702)
.++++.|||+|+||++|+++|+|||+|++.+++.+...+|+-.|
T Consensus 103 a~~~~~fyd~~~V~~ed~~i~~~RL~Ll~~v~~vl~~~l~lLGI 146 (152)
T 2zue_A 103 ASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGI 146 (152)
T ss_dssp HHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999639856899899999999999999999998651398
No 2
>>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} (A:116-136,A:513-607)
Probab=99.40 E-value=2.6e-12 Score=102.86 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=91.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99985565312467777738568359899999999999999999985025389999999853278887510270368868
Q gi|254781094|r 596 IFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDR 675 (702)
Q Consensus 596 v~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnVmVm~eD~ 675 (702)
+-.|+.. ..++..++|+++|++++|++|+..+......+..+..+.+|..++..+..|.+.++.|||+|+||++|+
T Consensus 9 ~~~~~~~----~~~~~~~iD~~lL~~~~E~~L~~~l~~~~~~i~~a~~~~~p~~l~~yL~~La~~fn~fy~~v~Vl~ed~ 84 (116)
T 1f7u_A 9 IPDILTR----KEDYGSNADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTE 84 (116)
T ss_dssp HHHHHHH----GGGTTCTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCH
T ss_pred HHHHHHC----CCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 9999856----511398466000499999999999998999999999768989999999999999999987265778988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHC
Q ss_conf 99999999999999999860684521
Q gi|254781094|r 676 EVRDNRLSLLQYIKNIILIVINVQKI 701 (702)
Q Consensus 676 ~IR~NRL~LL~~i~~~f~~iaDfs~L 701 (702)
.+|+|||+|++.++..+....|+--|
T Consensus 85 ~i~~aRL~Ll~av~~vl~~~l~lLGI 110 (116)
T 1f7u_A 85 ELATARLALYGAARQVLYNGMRLLGL 110 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999998785297
No 3
>>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} (A:1-131)
Probab=98.90 E-value=5.8e-10 Score=86.81 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHH
Q ss_conf 137889988421002303134551389989899999999886529998899999997---42367888984034578999
Q gi|254781094|r 361 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVL---SKADLCTEIVREFPELQGKI 437 (702)
Q Consensus 361 lk~~L~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L---~KaDL~t~mV~EFpeLQG~m 437 (702)
+++-+......+. .+.++.+.|++++.+.|+..++..|+..++.+.+.+..||.| .|.++.+.++..++++++.+
T Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~~~~~~H~~~V~~~a~~ia~~~~~d~~~l~~aallHDiG~~~~~~~~~~~~~~~~~~~ 80 (131)
T 3gw7_A 3 LQHWQAQFENWLK--NHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEE 80 (131)
T ss_dssp -CTTTGGGTTTTT--CC---------CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC--------CCSSHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHH
T ss_conf 8999999999999--98626887678799999999999999874988999999999734331312687210257779999
Q ss_pred HHHHHHH------CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999862------36998899999997344776777886358899999974998
Q gi|254781094|r 438 GKEYAVL------QNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDT 485 (702)
Q Consensus 438 G~~YA~~------~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDt 485 (702)
++.+... .+++++|+.+|..|..|.. .-|.++.|.||++||++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~I~~H~~~~~---~~~~~~~~~Iv~~AD~~da 131 (131)
T 3gw7_A 81 TRRLLREEFEQFPAEKIEAVCHAIAAHSFSAQ---IAPLTTEAKIVQDADRLEA 131 (131)
T ss_dssp HHHHHHHHTTSSCTTTTTSTTTGGGSSCTTSC---CCCCSHHHHHHHHHTGGGG
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHH
T ss_conf 99999864148999999999999985325789---8876358999999888864
No 4
>>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} (A:1-25,A:111-305)
Probab=98.85 E-value=4.2e-07 Score=67.28 Aligned_cols=146 Identities=20% Similarity=0.064 Sum_probs=120.6
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH---HHHHHHHHHH----------------------CC
Q ss_conf 031345513899898999999998865299-988999999974---2367888984----------------------03
Q gi|254781094|r 377 VVFHAKIGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLS---KADLCTEIVR----------------------EF 430 (702)
Q Consensus 377 v~F~~~LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~---KaDL~t~mV~----------------------EF 430 (702)
-.++...+.+++-+.++..+|..||+.++. +.+.+..|+.|. |..|.+.+.. .|
T Consensus 25 ~~~~~~~~~~~~HS~~vA~~A~~iA~~l~~~d~e~a~~agLLHDIGk~~l~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~ 104 (220)
T 3hc1_A 25 EKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLF 104 (220)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 26420078889999999999999999803689999999999984699999776669899999998657999899999996
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 45789999999862369988999999973447767778863588999999749989876510567687769688887434
Q gi|254781094|r 431 PELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATL 510 (702)
Q Consensus 431 peLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~ 510 (702)
-..+..+|...+..-+.+++++.+|..|+.|..... |.++.+.++++||+++.++++...+..|.++-+|...++.++
T Consensus 105 ~~~h~~~g~~l~~~~~~p~~i~~~I~~Hhe~~~~~~--~~~~la~~v~iAd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (220)
T 3hc1_A 105 GTSHCEVGFALAKRWSLNEFICDTILYHHDIEAVPY--KQAAIVAXVAFADEYCTLRRLGFEGHKPVDSVRTLLENHPSW 182 (220)
T ss_dssp SSCHHHHHHHHHHHTTCCHHHHHHHHHTTCGGGCSS--SCCHHHHHHHHHHHHHHHTTSCCSCCCCCSCHHHHHHHCTHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 889999999999986999999999998659242775--503597999999999997088878888770156776401468
Q ss_pred HHHHHHHH-CCCCCC
Q ss_conf 46899983-799788
Q gi|254781094|r 511 GIIRIILE-NKIDIP 524 (702)
Q Consensus 511 GiirIl~e-~~l~l~ 524 (702)
+.+.-..+ ..++-.
T Consensus 183 ~~l~~~~~~~~~d~~ 197 (220)
T 3hc1_A 183 GVIRRSLGGSDFDEK 197 (220)
T ss_dssp HHHHHHSTTCCCCHH
T ss_pred HHHHHHCCCCHHHHH
T ss_conf 999987485253499
No 5
>>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} (A:1-126)
Probab=98.62 E-value=4.2e-08 Score=74.11 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9988421002303134551389989899999999886529998899999997---4236788898403457899999998
Q gi|254781094|r 366 DQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVL---SKADLCTEIVREFPELQGKIGKEYA 442 (702)
Q Consensus 366 ~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L---~KaDL~t~mV~EFpeLQG~mG~~YA 442 (702)
+.....+. .+.++...++.++.+.|+..+|..||+.++.+.+.+..||.| .|.++...++.. ++....|+..+.
T Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~Hs~~Va~~a~~ia~~~g~~~~~l~~aallHDIG~~~~~~~~~~~-~~~~~~~~~~~~ 84 (126)
T 3dto_A 8 QSAEAWVK--KQLXDEYSGHDWYHIRRVTLXAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETA-KQQLIDWXEAAG 84 (126)
T ss_dssp HHHHHHHH--HTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------CHH-HHHHHHHHHTTT
T ss_pred HHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHCC
T ss_conf 99999999--997368887787999999999999998849999999999997203013457773768-999999998779
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6236998899999997344776777886358899999974998
Q gi|254781094|r 443 VLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDT 485 (702)
Q Consensus 443 ~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDt 485 (702)
...++.+.|+.+|..|..|.+...+ |.|..+.++++||++|.
T Consensus 85 ~~~~~~~~v~~~I~~H~~~~~~~~~-~~t~~~~ii~~AD~~dA 126 (126)
T 3dto_A 85 VPSQKIDHTXDIINTISFKGGHGQS-LATREAXVVQDADRLDA 126 (126)
T ss_dssp CCHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 9999999999999997642688999-99999999999899861
No 6
>>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} (A:1-126)
Probab=98.21 E-value=6.2e-06 Score=59.29 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=91.9
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 31345513899898999999998865299988999999974236788898403457899999998623699889999999
Q gi|254781094|r 378 VFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEE 457 (702)
Q Consensus 378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~e 457 (702)
+-+..-++.++-+.|+..++..||..++.+...+..||.| -|+......+.+.-...||...+...+.+++++..|.|
T Consensus 18 ~~~~~~~~~~~H~~~V~~~a~~la~~~~~d~~~~~~aall--HDiGk~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~i~e 95 (126)
T 3djb_A 18 LEKDASGHDWYHIRRVHKXAISLSEQEGGNRFIIEXAALL--HDVADEKLNESEEAGXKKVSDWLEELHVEEEESKHVLH 95 (126)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTT--HHHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7079877886999999999999998849989999999999--74043001340777899999999887989999999999
Q ss_pred HHC----CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 734----477677788635889999997499
Q gi|254781094|r 458 HLK----PRGPLENVPTNKISITVSLADKLD 484 (702)
Q Consensus 458 hY~----P~~~~d~lP~~~~g~ilsiaDKlD 484 (702)
|.- |.+.+. -|.+..+.++++||++|
T Consensus 96 ~~~~~g~~~~~~~-~~~~~~~~ii~~AD~~d 125 (126)
T 3djb_A 96 IIANXSYKGGHGG-KVESIEGKLVQDADRLD 125 (126)
T ss_dssp HTTCCC------------HHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCC-CCCCHHHHHHHHHHHHH
T ss_conf 9998076568999-99988999999899997
No 7
>>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} (A:)
Probab=97.67 E-value=0.0018 Score=42.47 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=124.5
Q ss_pred CHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88998842100230313455138998989999999988652999889999999742367888984034578999999986
Q gi|254781094|r 364 PLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAV 443 (702)
Q Consensus 364 ~L~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~ 443 (702)
.+.+++..+.+. ..=+..-++.+.-+.|+..++..++..++.+.+.+..||.|. |+-.....+.-+..-.+...|+.
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~Hs~~Va~~a~~ia~~lg~d~~~l~~AalLH--DiGk~~~~~~~~~~~~~~~~~~~ 81 (209)
T 3b57_A 5 EIILSAKNWXHS-HFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFH--DYSDIKLTTDEQEATKTLINWXE 81 (209)
T ss_dssp HHHHHHHHHHHT-TC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHT--TCCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999-844799887989999999999999988599899999999975--41334578745566899999998
Q ss_pred HCCCC----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----------CCCCCCCCCCHHHHHHH
Q ss_conf 23699----8899999997344776777886358899999974998987651-----------05676877696888874
Q gi|254781094|r 444 LQNEN----ISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWA-----------INEKPSGSKDPYALRRA 508 (702)
Q Consensus 444 ~~ge~----~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~-----------ig~~PTGS~DPfaLRR~ 508 (702)
+.+.+ +.|+.+|..|..+-.....-+.+..+.++.++|++|++..... ......+..++..+...
T Consensus 82 ~~~~~~~~~~~v~~~I~~Hhe~~~g~g~p~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (209)
T 3b57_A 82 TKEIPSELIKKIIRIIQSVSFKKGKNTFKALTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANQNNPKNTTLQHF 161 (209)
T ss_dssp HTTCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTTCCSCCCC-CCSCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 78999999999999999877403578889757899999978888603763237899871201676557667722399999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 34468999837997887896303649999999999987633888
Q gi|254781094|r 509 TLGIIRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIR 552 (702)
Q Consensus 509 a~GiirIl~e~~l~l~l~~li~~~~l~~Fi~~Rl~~~L~e~G~~ 552 (702)
...++++.-.... .....+. +.+..+..+.+..+..+.+..
T Consensus 162 ~~~~~~~~~~~~~--~~~~~~~-~~i~~~~~~~~~~~~~e~~~~ 202 (209)
T 3b57_A 162 YDKLLLIKDQLNT--ETAKTIA-KEKQKIXQDFIQALEKELKVL 202 (209)
T ss_dssp HHTHHHHHHHCCC--HHHHHTT-HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCC--HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999978877489--9999999-999999999999999997065
No 8
>>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} (A:1-23,A:106-281)
Probab=97.45 E-value=0.0036 Score=40.41 Aligned_cols=110 Identities=9% Similarity=-0.036 Sum_probs=85.2
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHH---HHHHHHH-------------CCHHHH
Q ss_conf 3134551389989899999999886529-------9988999999974236---7888984-------------034578
Q gi|254781094|r 378 VFHAKIGTQGERVSRIRVLGKKIAQLID-------ADVALVDRAIVLSKAD---LCTEIVR-------------EFPELQ 434 (702)
Q Consensus 378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~-------~~~~~~~rAa~L~KaD---L~t~mV~-------------EFpeLQ 434 (702)
......+.+++-+.|+..++..||..++ .+.+.+..|+.|.-.- +...+.. .|-...
T Consensus 28 ~~~~~~~~~w~HS~~va~~a~~ia~~l~l~~~~~~~~~~~a~~agLLHDIGk~~~~~~~~~~~~~~~~~e~e~~~~~~~H 107 (199)
T 3i7a_A 28 XVWEVXDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPEXFTTIEHLRSLVRKXQ 107 (199)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCH
T ss_conf 55678999999999999999999999623475331369999985515301489998885876764467999999865227
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998623699889999999734477677788635889999997499898765
Q gi|254781094|r 435 GKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFW 490 (702)
Q Consensus 435 G~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f 490 (702)
+.+|...+..-+.+++|+++|..|.-|...++. +..+.++++||.+|.+++..
T Consensus 108 ~~~ga~ll~~w~~p~~i~~~I~~Hhe~~d~~~~---~~l~~ii~lAd~~~~l~~~~ 160 (199)
T 3i7a_A 108 GPIGRAVLKSWDFAPEVXEVVERWADLPYLGDH---VSYLDFIRAAAFYTGELRAG 160 (199)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTCTTCCCSS---CCHHHHHHHHHHHHTSSCCG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHCCCC
T ss_conf 899999998759999999999987085547753---12999999999998653788
No 9
>>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} (A:1-128)
Probab=97.45 E-value=0.00091 Score=44.46 Aligned_cols=118 Identities=14% Similarity=0.012 Sum_probs=88.3
Q ss_pred HHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 899884210023031345513899898999999998865299-9889999999742367888984034578999999986
Q gi|254781094|r 365 LDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAV 443 (702)
Q Consensus 365 L~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~ 443 (702)
+.+.++.+.+ ....+..-+..++-+.|+..+|..|+..++. +.+.+..||.|--...+. ...+.+...||...+.
T Consensus 6 ~l~~~~~l~~-~~~~~~~~~~~~~Hs~~Va~la~~la~~l~~~~~~ll~~aaLlHDiG~~~---~~~~~~~~~~~~~~l~ 81 (128)
T 2qgs_A 6 KIKKAYEYXK-SFHQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSK---LTDEILAYDQLKQFLS 81 (128)
T ss_dssp HHHHHHHHHH-HHTTTCSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCS---SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC---CCCCHHHHHHHHHHHH
T ss_conf 9999999999-99628988778799999999999999884987399999999986214312---3542788999999998
Q ss_pred HCCCCHHHHHHHHH-HHCCCCCC---CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 23699889999999-73447767---778863588999999749989
Q gi|254781094|r 444 LQNENISCCDAIEE-HLKPRGPL---ENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 444 ~~ge~~~Va~aI~e-hY~P~~~~---d~lP~~~~g~ilsiaDKlDtl 486 (702)
..|.+.++..++.. +..++..| ..-|.+..|.||++||++|.|
T Consensus 82 ~~~~~~~~~~~i~~~~hh~~~~g~g~p~~~~~~~a~Iv~~AD~~dal 128 (128)
T 2qgs_A 82 TLDLSSEISQQVLYIIKHXSYRAGKNNHVKLSIDGEIVRDADRLDAI 128 (128)
T ss_dssp TTTCCHHHHHHHHHHHHTTC-------CCCCCHHHHHHHHHHHHTTS
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 87989999999999999701457888899857788898810378763
No 10
>>2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} (A:1-134)
Probab=97.32 E-value=0.0014 Score=43.24 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=80.5
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHH--------------HCCHHHHHHHHHH
Q ss_conf 31345513899898999999998865299988999999974---236788898--------------4034578999999
Q gi|254781094|r 378 VFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLS---KADLCTEIV--------------REFPELQGKIGKE 440 (702)
Q Consensus 378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~---KaDL~t~mV--------------~EFpeLQG~mG~~ 440 (702)
..+..-++.+.-+.|+..+|..+|+.++.+.+.+..||.|- |..+-++.+ ..+-......|..
T Consensus 11 ~~~~~~~~~~~Hs~~Va~~a~~la~~~~ld~~~~~~aalLHDiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~ 90 (134)
T 2o08_A 11 VKPHLTEHRYQHTIGVXETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEXRTLIREKLSQQDILFYGDELLHAPCGAY 90 (134)
T ss_dssp HGGGCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99867843426999999999999999093999999999998605656869999998637995569997543227999999
Q ss_pred HHHHCCC--CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9862369--988999999973447767778863588999999749989
Q gi|254781094|r 441 YAVLQNE--NISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 441 YA~~~ge--~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
.+...+. +++|+.+|..|-.|. -|.+..+.||++||++|.|
T Consensus 91 ~l~~~~~~~~~~v~~~i~~h~~~~-----~~~~~~~~Il~~aD~~dal 133 (134)
T 2o08_A 91 YVREEVGIEDEDVLQAIRFHTTGR-----PNXSLLEKIIFLADYIEPN 133 (134)
T ss_dssp HHHHHHCCCCHHHHHHHHTTTTCC-----TTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCC-----CCCCCHHHHHHHHHHCCCC
T ss_conf 999881898099999999758899-----9987177898988524641
No 11
>>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} (A:)
Probab=97.13 E-value=0.0069 Score=38.46 Aligned_cols=114 Identities=14% Similarity=0.014 Sum_probs=92.4
Q ss_pred EHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 313455-13899898999999998865299988999999974236788--898403457899999998623699889999
Q gi|254781094|r 378 VFHAKI-GTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCT--EIVREFPELQGKIGKEYAVLQNENISCCDA 454 (702)
Q Consensus 378 ~F~~~L-Gs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t--~mV~EFpeLQG~mG~~YA~~~ge~~~Va~a 454 (702)
.++... ++.+.-+.|+..+|..||..++.+.+.+.-||.|--.-... .--.+...-....|..+++..+..++++++
T Consensus 25 ~~~~~~~~~~~~Hs~~V~~~a~~ia~~l~ld~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (220)
T 2pq7_A 25 FKDYDDPAHDISHTFRVXENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESGAEYASGLLPTXGFDISFVAE 104 (220)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHHHCCCHHHHHHHHHHHHGGGGTCCHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 74489987566999999999999998849899999999998764202205776568999999999989876999999999
Q ss_pred HHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99973-44776777886358899999974998987651
Q gi|254781094|r 455 IEEHL-KPRGPLENVPTNKISITVSLADKLDTLINFWA 491 (702)
Q Consensus 455 I~ehY-~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ 491 (702)
|..|- ...+++..-+.+..+.++++||.+|.+.+...
T Consensus 105 v~~h~e~~~~~~~~~~~~~~a~ii~~aD~~d~~~~~~~ 142 (220)
T 2pq7_A 105 VSKAIRSHRYSGGLTPTSLTGKILQDADRLDAIGAVAI 142 (220)
T ss_dssp HHHHHHHCC-----CCCSHHHHHHHHHHHGGGSSHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999981875577766789999999999810565103
No 12
>>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} (A:1-24,A:332-464)
Probab=96.95 E-value=0.017 Score=35.69 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 38899999999998556531246777773856835989999999999999999998502538999999985327888751
Q gi|254781094|r 586 GEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF 665 (702)
Q Consensus 586 ~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FF 665 (702)
+.-+.=++-|+.+|+.+........ ...+.. +.+++|..|...+......+..+....+=......+.+|....+.|.
T Consensus 30 g~YiQYa~AR~~SIlrKa~~~~~~~-~~~~~~-l~~~~E~~Ll~~L~~fp~vl~~aa~~leP~~L~~YL~~La~~Fn~fY 107 (157)
T 3fnr_A 30 VYYINYAHARIHQVFAKAGKKIDDV-MKADLQ-SLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFY 107 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTS-TTCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHCCCCCCC-CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 2102457899999999824443310-125542-18988999999998489999999984782489999999999999886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 02703688689999999999999999986068
Q gi|254781094|r 666 DQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 (702)
Q Consensus 666 DnVmVm~eD~~IR~NRL~LL~~i~~~f~~iaD 697 (702)
+++.|-.++. ++.||.|+..++..+....+
T Consensus 108 ~~~~Il~ee~--~~aRL~L~~av~~VL~~gL~ 137 (157)
T 3fnr_A 108 NENKVVGSAN--ENDLLKLFSLVALSIKTAFS 137 (157)
T ss_dssp HHCCCTTSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHH
T ss_conf 0288899979--89999999999999999531
No 13
>>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} (A:1-159)
Probab=95.75 E-value=0.11 Score=30.10 Aligned_cols=106 Identities=12% Similarity=-0.017 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HHHHH--------------HCCHHHHHHHHHHH
Q ss_conf 13455138998989999999988652999889999999742367---88898--------------40345789999999
Q gi|254781094|r 379 FHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADL---CTEIV--------------REFPELQGKIGKEY 441 (702)
Q Consensus 379 F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL---~t~mV--------------~EFpeLQG~mG~~Y 441 (702)
....-+..++-+.|+..+|..||+.++.+.+.+..||.|--.-. .+.+. ..........|...
T Consensus 20 ~~~~~~~~~~Hs~~va~~a~~ia~~~~~~~~~~~~a~lLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 99 (159)
T 2ogi_A 20 RHXXSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYK 99 (159)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 97368246499999999999999997919999999999998166468799999987548974398874001003889999
Q ss_pred HHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 862369-98899999997344776777886358899999974998987
Q gi|254781094|r 442 AVLQNE-NISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLIN 488 (702)
Q Consensus 442 A~~~ge-~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g 488 (702)
+...++ +..++.++..|.-+-. -|.+..+.+|.+||++|....
T Consensus 100 l~~~~~~~~~~~~~~~~hh~~~~----~~~~~~a~ii~~AD~~d~~~~ 143 (159)
T 2ogi_A 100 IQEDLAIKDQDILAAIAKHTVGS----AQXSTLDKIVYVADYIEHNRD 143 (159)
T ss_dssp HHHHSCCCCHHHHHHHHTTTTCC----SSCCHHHHHHHHHHHHCTTCC
T ss_pred HHHHCCCCCHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHCCCCC
T ss_conf 86325999799999999618899----985469999999998623799
No 14
>>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} (A:1-135)
Probab=95.50 E-value=0.14 Score=29.43 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHH--------------HHCCHHHHHHHHHHHHH
Q ss_conf 4551389989899999999886529998899999997423678---889--------------84034578999999986
Q gi|254781094|r 381 AKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLC---TEI--------------VREFPELQGKIGKEYAV 443 (702)
Q Consensus 381 ~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~---t~m--------------V~EFpeLQG~mG~~YA~ 443 (702)
..-+..+.-+.|+..+|..+|..++.+.+.+..||.|.-+-.+ ..+ +...|+.-.-+-+.+..
T Consensus 15 ~~~~~~~~Hs~~Va~la~~ia~~l~ld~~~~~~aaLlHDIGk~~~~~~~~~~~~~l~~~~~~~~~~h~~~g~~~l~~~~~ 94 (135)
T 3ccg_A 15 NLGEKRYKHSLGVXDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILA 94 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf 57820728999999999999998294999999999999853546869999988753673149999867322479999998
Q ss_pred HC---CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23---699889999999734477677788635889999997499
Q gi|254781094|r 444 LQ---NENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLD 484 (702)
Q Consensus 444 ~~---ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlD 484 (702)
.. ..++.+..+++-|-.|. -|.++.+.||++||++|
T Consensus 95 ~~~~~~~~e~~~~~~~~~~~~~-----~~~~~~a~Ii~~AD~~d 133 (135)
T 3ccg_A 95 KKVIGIDDEDVLNAIEFHTTGR-----PNXSLLEKIIYIADYIE 133 (135)
T ss_dssp HHTTCCCCHHHHHHHHTTTTCC-----SSCCHHHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHC
T ss_conf 7543687599999999728899-----99687999999999716
No 15
>>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} (A:)
Probab=95.42 E-value=0.19 Score=28.56 Aligned_cols=140 Identities=10% Similarity=-0.045 Sum_probs=99.9
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH-------------HHHHHHHHHHC-------------C
Q ss_conf 31345513899898999999998865299-988999999974-------------23678889840-------------3
Q gi|254781094|r 378 VFHAKIGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLS-------------KADLCTEIVRE-------------F 430 (702)
Q Consensus 378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~-------------KaDL~t~mV~E-------------F 430 (702)
......-.++....++..++..+|..++. +.+.+.-|+.|. |..-.+..-.+ |
T Consensus 117 ~~~~~~~~~~~hs~~~A~la~~la~~l~~~~~~~~~~agllhdiGkl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (297)
T 1vqr_A 117 PYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFL 196 (297)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 66778999999978999999999876254268999986777530299998650587888999987457998999999996
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 45789999999862369988999999973447767778863588999999749989876510567687769688887434
Q gi|254781094|r 431 PELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATL 510 (702)
Q Consensus 431 peLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~ 510 (702)
-.-....|..-+..-+.+.+++++|..||-|-..++.. ...+.++++||.+|.++ +..||.-.....
T Consensus 197 ~~~h~~~g~~~l~~w~~~~~~~~~i~~hh~~~~~~~~~--~~~~~iv~iAd~~~a~~-----------~~~~~~~~~~~~ 263 (297)
T 1vqr_A 197 GVDHISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHLFAPH-----------DGSSPFNAKAAV 263 (297)
T ss_dssp SSCHHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHHHCTT-----------TTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCH--HHHHHHHHHHHHHHHHH-----------CCCCCCCHHHHH
T ss_conf 99999999999998699999999999846985288306--78999999999999871-----------478970067888
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q ss_conf 46899983799788789630
Q gi|254781094|r 511 GIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 511 GiirIl~e~~l~l~l~~li~ 530 (702)
..++.+...+++..+.+.+.
T Consensus 264 ~~l~~l~~~~~d~~~~~~~~ 283 (297)
T 1vqr_A 264 ALLKEAKTQGINFDLNNLLS 283 (297)
T ss_dssp HHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHH
T ss_conf 87899998553787999999
No 16
>>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} (A:)
Probab=95.08 E-value=0.18 Score=28.75 Aligned_cols=107 Identities=18% Similarity=0.101 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH----HHH
Q ss_conf 1345513899898999999998865299988999999974236788898403457899999998623699889----999
Q gi|254781094|r 379 FHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISC----CDA 454 (702)
Q Consensus 379 F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~V----a~a 454 (702)
-+....+-+.-+.|+..++..|+..++.|...+..||.| -|+.-..-++..|-.-.+..-+....|.+++. +.+
T Consensus 24 ~~~~~~~r~~Hsl~V~~~a~~ia~~~~~d~~~~~~AaLl--HDIGk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (231)
T 2pjq_A 24 AHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWL--HDVIDDKLXANPAKAHQDLIVQLNAQNVTADDQTAIFAI 101 (231)
T ss_dssp TTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH--HHHHC---------CHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 569776787999999999999998849999999999999--752121135886778999999987199898999999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999734477677788635889999997499898
Q gi|254781094|r 455 IEEHLKPRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 455 I~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
|..|..........|.+..+.++..+|++|+..
T Consensus 102 I~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (231)
T 2pjq_A 102 IDHXSFSKSFNGPQKLSLEGQVVQDADRLDAIG 134 (231)
T ss_dssp HTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 994898823678987689999999888987432
No 17
>>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} (A:)
Probab=94.26 E-value=0.21 Score=28.23 Aligned_cols=120 Identities=9% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHC---CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 899884210---02303134551389989899999999886529------998899999997423678889840345789
Q gi|254781094|r 365 LDQRMARLD---MLDVVFHAKIGTQGERVSRIRVLGKKIAQLID------ADVALVDRAIVLSKADLCTEIVREFPELQG 435 (702)
Q Consensus 365 L~~~~~~L~---~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l~------~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG 435 (702)
+.+-+.+|+ +++-+.+..-.|+++-+.|+..+|..+|..++ .|.+.+..+|.| -|+.--.+++.+.-.+
T Consensus 8 ~~~~~~~Lk~~~R~~~~~~~~~esva~Hs~~Va~la~~la~~l~~~~~~~id~~~~~~~aLl--HDigk~~~~di~~~~~ 85 (201)
T 2paq_A 8 FFAHLSRLKLINRWPLXRNVRTENVSEHSLQVAXVAHALAAIKNRKFGGNVNAERIALLAXY--HDASEVLTGDLPTPVK 85 (201)
T ss_dssp HHHHHGGGGGCBSCTTSCCSSCCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHH--TTTTHHHHCCCCCC--
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCC
T ss_conf 99999882747535899999997899999999999999987887734667799999999997--0069887178775220
Q ss_pred HH------------HHHH-HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99------------9999-86236998899999997344776777886358899999974998987651
Q gi|254781094|r 436 KI------------GKEY-AVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWA 491 (702)
Q Consensus 436 ~m------------G~~Y-A~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ 491 (702)
.. ...+ ....+.+++++.++..|.-. .=|.|+.|.+|.+||++|.++...-
T Consensus 86 ~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~hhe~-----~~~~~~ea~iv~~aD~lda~~~~~~ 149 (201)
T 2paq_A 86 YFNSQIAQEYKAIEKIAQQKLVDXVPEELRDIFAPLIDE-----HAYSDEEKSLVKQADALCAYLKCLE 149 (201)
T ss_dssp -------CTHHHHHHHHHHHHHTTSCGGGHHHHHHHHTT-----TSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 013666999999999999999861879899999999986-----1459899999999889999999999
No 18
>>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} (A:23-200)
Probab=92.06 E-value=0.8 Score=24.31 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=73.2
Q ss_pred CCEEHHH-HHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHH---HH---HHHHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf 2303134-551389989899999999886529--9988999999974---23---6788898403457899999998-62
Q gi|254781094|r 375 LDVVFHA-KIGTQGERVSRIRVLGKKIAQLID--ADVALVDRAIVLS---KA---DLCTEIVREFPELQGKIGKEYA-VL 444 (702)
Q Consensus 375 ~~v~F~~-~LGs~~dK~~Ri~~la~~la~~l~--~~~~~~~rAa~L~---Ka---DL~t~mV~EFpeLQG~mG~~YA-~~ 444 (702)
.+-++.. .=-|+.+-+-|+..+|..+|+.++ .|.+.+.+.|.+= ++ |+.+-....-++..-..-..-. ..
T Consensus 7 ~g~~~~~~~~EsvaeHs~~vA~~a~~la~~~g~~~d~~~~~~~aLlHDi~E~~~gDi~~~~k~~~~~~~~~e~~a~~~l~ 86 (178)
T 3kh1_A 7 QTLLTDSSRRENDAEHSWHIATXAFLLAEYADEAVQIGRVARXLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLF 86 (178)
T ss_dssp EEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCTTCCC---CHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 76106999974599999999999998777648988989999999998889876378777775348888999999999998
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3699889999999734477677788635889999997499898765105
Q gi|254781094|r 445 QNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAIN 493 (702)
Q Consensus 445 ~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig 493 (702)
+..+.+....+.+++..-..+ +|+.+.+|..||++|.++-++.-.
T Consensus 87 ~~lp~~~~~~~~~~~~e~e~~----~t~Ea~ivk~aD~ldallq~~~~~ 131 (178)
T 3kh1_A 87 GLLPPDQAAEYSALWQEYEAR----ETADARFADALDRLQPLLHNFETE 131 (178)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT----CSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 757702589999999998737----999999999998224999998813
No 19
>>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:267-426)
Probab=89.52 E-value=1.2 Score=23.15 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 588999999749989876510567687769688887434468999837997887896303
Q gi|254781094|r 472 KISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED 531 (702)
Q Consensus 472 ~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l~~li~~ 531 (702)
+..++-.|||-+=|++=+++=|..||...-.|=|||---=.+|.+..-+++-++.++++.
T Consensus 68 ~~~a~riIaDH~R~~~f~i~DGv~PSN~g~GYvlRrllRRa~r~~~~lg~~~~l~~lv~~ 127 (160)
T 2zze_A 68 PYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVPLSEIVAL 127 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 543303632189999999836886554554057889999999999860576639999999
No 20
>>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} (A:84-98,A:399-592)
Probab=89.12 E-value=1.4 Score=22.57 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 51388999999999985565312467777738568359899999999999999999985025389999999853278887
Q gi|254781094|r 584 AKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEI 663 (702)
Q Consensus 584 ~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~ 663 (702)
.-...+..++.|+.++...... ..........+.+..+...+......+..+++..++..++..+..+....+.
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 158 (209)
T 1iq0_A 85 DTGPYVQYAHARAHSILRKAGE------WGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNA 158 (209)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCC------CCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 8299999999999999997553------2786655389899999999976899999999868848999999999999998
Q ss_pred HHCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 51027036-------88689999999999999999986068
Q gi|254781094|r 664 FFDQVLVN-------VDDREVRDNRLSLLQYIKNIILIVIN 697 (702)
Q Consensus 664 FFDnVmVm-------~eD~~IR~NRL~LL~~i~~~f~~iaD 697 (702)
||+...+- .+++..+..|+.+...+...+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 199 (209)
T 1iq0_A 159 YYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLD 199 (209)
T ss_dssp HHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86156666555861168899999999999999999999743
No 21
>>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} (A:398-534)
Probab=88.35 E-value=1.6 Score=22.23 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998556531246777773856835989999999999999999998502538999999985327888751027
Q gi|254781094|r 589 FLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV 668 (702)
Q Consensus 589 l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV 668 (702)
+-..+.|+...+.+.... . +.+.--..+.++.+...+.....++...+++-+|..++..+..+....+.||+..
T Consensus 3 l~N~~~r~~~~~~~~~~~--~----~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~ 76 (137)
T 1rqg_A 3 LGNFVHRALTFVNRYFDG--V----VPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHK 76 (137)
T ss_dssp HHHHHHHHHHHHHHHSTT--B----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCHHHHHHHHHHHCCCCC--C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 000110665421102456--6----7732222067889999999999999998752238999999999986655668999
Q ss_pred C----CCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 0----36886899999999999999999860684
Q gi|254781094|r 669 L----VNVDDREVRDNRLSLLQYIKNIILIVINV 698 (702)
Q Consensus 669 m----Vm~eD~~IR~NRL~LL~~i~~~f~~iaDf 698 (702)
. ..++++..+...-.+...++.+...++-|
T Consensus 77 kpw~~~~~~~~~~~~~~~~~~~~l~~~~~lL~Pf 110 (137)
T 1rqg_A 77 QPWKTAKEDKVRTGTTVNISLQIVKALGILLEPF 110 (137)
T ss_dssp CHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9876415530678999998899999999999998
No 22
>>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} (A:29-184)
Probab=80.78 E-value=2 Score=21.57 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 38998989999999988652-----9998899999997423678889840345789999999862369988999999973
Q gi|254781094|r 385 TQGERVSRIRVLGKKIAQLI-----DADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHL 459 (702)
Q Consensus 385 s~~dK~~Ri~~la~~la~~l-----~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY 459 (702)
|+.+-+-|+..+|..++... +.|...+-+-|.+ -|++=-.+|--|- -+.+++............+.+++
T Consensus 9 svAeHs~~va~~a~~l~~~~~~~g~~vd~~~~~~~aL~--HDl~E~~~GDi~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
T 1xx7_A 9 SVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAII--HDLGEAIITDLPL----SAQKYLNKEEAEAKALKDVLPEY 82 (156)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH--TTTTHHHHCCCCH----HHHTTSCHHHHHHHHHHHHCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHCCCCCC----CCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 49999999999999999898763555689999999998--6389987279876----54023569999999998648588
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4477677788635889999997499898765105
Q gi|254781094|r 460 KPRGPLENVPTNKISITVSLADKLDTLINFWAIN 493 (702)
Q Consensus 460 ~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig 493 (702)
+..+..-+-.+|+.+.++..+||++++.-++.-.
T Consensus 83 ~~l~~E~e~~~t~Ea~~vk~~Dkl~~~lq~~~~~ 116 (156)
T 1xx7_A 83 TELFEEYSKALTLEGQLVKIADKLDMIIQAYEYE 116 (156)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8889998757888999999999999999999999
No 23
>>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=79.18 E-value=3.9 Score=19.62 Aligned_cols=109 Identities=13% Similarity=-0.013 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 51389989899999999886529998899999997423-67888984034578999999986236998899999997344
Q gi|254781094|r 383 IGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA-DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKP 461 (702)
Q Consensus 383 LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~Ka-DL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~P 461 (702)
-=|+.+-+=|+..+|..++...+....+..|+..+|=. ||+=-.+|..|.-.++ ...+.++.. +.+.-
T Consensus 36 ~EsVAeHs~~va~la~~l~~~~~~~~~d~~~~i~~aL~HDl~E~~~GDi~~~~k~-------~~~~~~~~~----~e~~~ 104 (173)
T 1ynb_A 36 PESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHKIARR-------YVSCDEEGA----REEQL 104 (173)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCCCCTTGGG-------TCCCCHHHH----HHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-------HCCCCHHHH----HHHHH
T ss_conf 9878999999999999998670885100999999999999999871797466775-------013666888----88999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 7767778863588999999749989876510567687769688
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYA 504 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfa 504 (702)
.....+--+|+.+.++..+||+++++=+..- .-.|..++|-
T Consensus 105 l~~e~e~~~t~Ea~~vk~~Dkl~~~lq~~~~--~~~g~~~~~~ 145 (173)
T 1ynb_A 105 SWMESKPDFSDVEVYVSDADKLELAFQGVEY--SQQVSYAIRF 145 (173)
T ss_dssp TTCSSCCCCGGGHHHHHHHHHHHHHHHHHHH--TTTCGGGGGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHH
T ss_conf 8998741434899999998799999999999--9718625668
No 24
>>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:261-423)
Probab=74.09 E-value=5.3 Score=18.70 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 588999999749989876510567687769688887434468999837997887896303
Q gi|254781094|r 472 KISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED 531 (702)
Q Consensus 472 ~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l~~li~~ 531 (702)
+..++-.|||-+=|++=+++=|..||..+-.|=|||---=.+|.+..-+++..|.++++.
T Consensus 73 ~~~~~rviaDH~R~~~~~i~DGv~PSN~g~GYvlR~liRRa~r~~~~lg~~~~l~eLv~~ 132 (163)
T 2ztg_A 73 PLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLARLXIRRSLRLAEELELGLDLYDLVEX 132 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHH
T ss_pred CCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 201001153899999998726865676775379999999999876650666217889999
No 25
>>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:27-308)
Probab=72.96 E-value=5.7 Score=18.52 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHCCCC-EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------HHHHH----
Q ss_conf 378899884210023-03134551389989899999999886529998899999997423678--------88984----
Q gi|254781094|r 362 SKPLDQRMARLDMLD-VVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLC--------TEIVR---- 428 (702)
Q Consensus 362 k~~L~~~~~~L~~~~-v~F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~--------t~mV~---- 428 (702)
.+|.-.|+..+.+++ .+|..-.-|-++-+.-+..||..++..++.+...+..||.|- |+- .+.+.
T Consensus 25 ~t~~~qRL~~i~Qlg~~~~~~~~htR~eHSlgV~~la~~~~~~l~~~~~lv~~aaLlH--DiGh~pfsH~~e~~~~~~~~ 102 (282)
T 2dqb_A 25 HTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSH--DLGHPPFGHTGEHVLNALXQ 102 (282)
T ss_dssp HSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHT--TTTCCSSTTHHHHHHHHHTT
T ss_pred CCHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHH
T ss_conf 4898860467887843699985366678999999999999999852020478888742--22789852139999899876
Q ss_pred CC----HHHHHH-HHHH------HHHHCCCCHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 03----457899-9999------9862369988999999973447767----7788635889999997499898
Q gi|254781094|r 429 EF----PELQGK-IGKE------YAVLQNENISCCDAIEEHLKPRGPL----ENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 429 EF----peLQG~-mG~~------YA~~~ge~~~Va~aI~ehY~P~~~~----d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
+- +|.|+. |-.+ -+...+.++++..+|-+|..+.... ...+.+....+.--|||+|.+.
T Consensus 103 ~~~~~~he~~~~~i~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~daD~~dY~~ 176 (282)
T 2dqb_A 103 DHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAAYSPGFKPLYEGQGTLEAQVVDLSDAIAYAA 176 (282)
T ss_dssp TTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 25990020789999975521677779840235445443203322262045676426877899853254287317
No 26
>>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:352-500)
Probab=59.35 E-value=10 Score=16.75 Aligned_cols=88 Identities=8% Similarity=0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 999999985565312467777738568359899999999999999999985025389999999853278887510270--
Q gi|254781094|r 592 SAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVL-- 669 (702)
Q Consensus 592 a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnVm-- 669 (702)
-..|+.+.+.+.. ++..+... .+.+...+.....++..++++-+|..++..+..+....|.||+...
T Consensus 5 ~i~r~~~~~~~~~--~~~~~~~~---------d~~l~~~l~~~~~~~~~~~e~~~~~~al~~l~~~~~~~n~yi~~~~pw 73 (149)
T 2d5b_A 5 LVQRTRAMLFRFA--EGRIPEPV---------AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPW 73 (149)
T ss_dssp HHHHHHHHHHHHS--TTBCCCCC---------CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHCCCC--CCCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 6677765310001--10111010---------015677799999999998876678999999999999999999973975
Q ss_pred -CCCCCHHHHHHHHHHHHHHHH
Q ss_conf -368868999999999999999
Q gi|254781094|r 670 -VNVDDREVRDNRLSLLQYIKN 690 (702)
Q Consensus 670 -Vm~eD~~IR~NRL~LL~~i~~ 690 (702)
-..+|+.-+..-+.+|..+-.
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~l~ 95 (149)
T 2d5b_A 74 ELFKKEPEEARAVLYRVVEGLR 95 (149)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
T ss_conf 3444899999999999999999
No 27
>>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:313-451)
Probab=56.30 E-value=11 Score=16.47 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC------CCCH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---HHCCC
Q ss_conf 3455138998989999999988652------9998---8999999974236788898403457899999998---62369
Q gi|254781094|r 380 HAKIGTQGERVSRIRVLGKKIAQLI------DADV---ALVDRAIVLSKADLCTEIVREFPELQGKIGKEYA---VLQNE 447 (702)
Q Consensus 380 ~~~LGs~~dK~~Ri~~la~~la~~l------~~~~---~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA---~~~ge 447 (702)
..+-+..+.-+.|+..++..+++.+ +.+. ..+.-||.|.-.-.+..- ...++.+-.+-.... ....+
T Consensus 11 ~~~~~~~~~H~~~v~~la~~l~~~l~~~~~~~l~~~~~~~l~~AallhdiG~~~~~-~~l~~~~~~~i~~h~~~g~~~~~ 89 (139)
T 1u6z_A 11 ANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINH-SGLHRHSAYILQNSDLPGFNQEQ 89 (139)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTTTTTTCS-TTHHHHHHHHHHHSCCTTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99859588888888999999999886532567996799999999998561600386-67999899999749889989999
Q ss_pred CHHHHHHHHHHHCCC-CCCCC----CCC---CHHHHHHHHHHHHHHHHH
Q ss_conf 988999999973447-76777----886---358899999974998987
Q gi|254781094|r 448 NISCCDAIEEHLKPR-GPLEN----VPT---NKISITVSLADKLDTLIN 488 (702)
Q Consensus 448 ~~~Va~aI~ehY~P~-~~~d~----lP~---~~~g~ilsiaDKlDtl~g 488 (702)
...|+..|+.|...- ++|.+ ++. ...+.+++|||.+|.++.
T Consensus 90 ~~~ia~ii~~hhe~~dg~g~p~~~~l~~~~i~~~a~il~iad~~d~l~~ 138 (139)
T 1u6z_A 90 QLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ 138 (139)
T ss_dssp HHHHHHHHHTSSSCCCCTTCCCCSSCCHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999998478998044444250039999999999999999737355
No 28
>>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} (A:291-413,A:490-506)
Probab=46.06 E-value=16 Score=15.35 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH--H--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 34578999999986236998899999997--3--44776777886358899999974998987651056768
Q gi|254781094|r 430 FPELQGKIGKEYAVLQNENISCCDAIEEH--L--KPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPS 497 (702)
Q Consensus 430 FpeLQG~mG~~YA~~~ge~~~Va~aI~eh--Y--~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PT 497 (702)
..+||..+.++|-.-..+.-++|+-.+|- | .||.....+|.+....+..+..++.....+........
T Consensus 4 l~~LQ~~ask~~g~sa~~tl~iaQ~LYE~~glITYPRTds~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (140)
T 1i7d_A 4 LSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVD 75 (140)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCTTCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 799999999873245999999999777408867752588564788999999999999864111013100045
No 29
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:110-177)
Probab=45.80 E-value=17 Score=15.32 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 999999999876338887899885416
Q gi|254781094|r 536 LFFHDRLKLYLHDRDIRHDLIEAILRP 562 (702)
Q Consensus 536 ~Fi~~Rl~~~L~e~G~~~DiI~AVl~~ 562 (702)
--+.++++..|--+||+.++|+.|++.
T Consensus 27 k~~kqKi~q~L~~KGFs~eii~~v~~~ 53 (68)
T 3e3v_A 27 RNKQNKIKQSLLTKGFSYDIIDTIIQE 53 (68)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999998889999999999986
No 30
>>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3} (A:23-153)
Probab=45.39 E-value=2.3 Score=21.24 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH----HHHH
Q ss_conf 38998989999999988652-----99988999999974236788898403457899999998623699889----9999
Q gi|254781094|r 385 TQGERVSRIRVLGKKIAQLI-----DADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISC----CDAI 455 (702)
Q Consensus 385 s~~dK~~Ri~~la~~la~~l-----~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~V----a~aI 455 (702)
|+.+-+=|+..+|..++... +.|...+-+.|.+ -||+=-.+|-.|.. ++...+.... -.-+
T Consensus 10 svAeHs~~~A~ia~~la~~~~~~~~~vd~~k~i~~aL~--HDl~E~~~GDi~~~--------~ke~~~~~~~~~~l~~~l 79 (131)
T 2cqz_A 10 SIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIV--HDLAEAIITDIPLS--------AQEFVDKDKAEALVFKKV 79 (131)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH--TTTTHHHHCCCCTT--------TTTTSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999898772556589999999998--56999972799985--------041567999999998876
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997344776777886358899999974998987651
Q gi|254781094|r 456 EEHLKPRGPLENVPTNKISITVSLADKLDTLINFWA 491 (702)
Q Consensus 456 ~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ 491 (702)
.+++...+..-+--+|+.+.++..+||+|++.-+..
T Consensus 80 ~~~~~~l~~eye~~~t~Ea~~vk~~Dkl~~llq~~~ 115 (131)
T 2cqz_A 80 FPEFYELYREYQECSSPEAQLVRIADKLDMILQAYQ 115 (131)
T ss_dssp CGGGHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 576899879988378689999999999999999999
No 31
>>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* (A:)
Probab=41.03 E-value=20 Score=14.84 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6877696888874344689998
Q gi|254781094|r 496 PSGSKDPYALRRATLGIIRIIL 517 (702)
Q Consensus 496 PTGS~DPfaLRR~a~GiirIl~ 517 (702)
-++|+||...--+-+||+.+++
T Consensus 2 c~dssdplv~aasiiGilHliL 23 (43)
T 2kih_A 2 SNDSSDPLVVAANIIGILHLIL 23 (43)
T ss_dssp ----CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8888860999999999999999
No 32
>>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A (A:401-543)
Probab=34.16 E-value=25 Score=14.12 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC----CCCC-CHHHHHHHHHHHHHH
Q ss_conf 9899999999999999999985025389999999853278887510270----3688-689999999999999
Q gi|254781094|r 621 LEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVL----VNVD-DREVRDNRLSLLQYI 688 (702)
Q Consensus 621 ~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnVm----Vm~e-D~~IR~NRL~LL~~i 688 (702)
.+.++.+...+.+...++..++++-+|..++..+..+....+.||+... ..++ ++.-...-+..+..+
T Consensus 24 ~~~d~~l~~~~~~~~~~v~~~~e~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~~~~~~~~~~ 96 (143)
T 3h99_A 24 ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINL 96 (143)
T ss_dssp SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 0124778999999999999999866999999999999999999998358754416864499999999999999
No 33
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:1-64)
Probab=29.59 E-value=25 Score=14.09 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999987633888789988541
Q gi|254781094|r 541 RLKLYLHDRDIRHDLIEAILR 561 (702)
Q Consensus 541 Rl~~~L~e~G~~~DiI~AVl~ 561 (702)
-++.+|+++||+.++|+.|++
T Consensus 37 Ei~~kL~~k~~~e~~i~~vi~ 57 (64)
T 3e3v_A 37 EVEDKLRSLDIHEDYISEIIN 57 (64)
T ss_dssp HHHTTSGGGTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999866999999999999
No 34
>>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:283-403,X:476-493)
Probab=29.17 E-value=30 Score=13.57 Aligned_cols=110 Identities=9% Similarity=0.084 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 3457899999998623699889999999734---4776777886358899999974998987651056768776968888
Q gi|254781094|r 430 FPELQGKIGKEYAVLQNENISCCDAIEEHLK---PRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALR 506 (702)
Q Consensus 430 FpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~---P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLR 506 (702)
.++||.-+.+.|-.-.-+.-++|+.++||=+ ||+....+|.+..+.+-++.. +.|+....+.+.+-|..=.
T Consensus 4 l~~LQ~~ask~~g~Sa~~tl~iaQ~LYE~glISYPRTds~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 77 (139)
T 1mw9_X 4 TSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIS------DNFGKKYLPESPNQYASKE 77 (139)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSBCCSCCCCCCCCHHHHHHHHHHHH------HHTCGGGSCSSCCCCC---
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCCC
T ss_conf 7999999998709999999999999985787134778876589999999999999------8750332001442003565
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 74344689998379978---878963-03649999999999987
Q gi|254781094|r 507 RATLGIIRIILENKIDI---PLSQFI-EDQNLILFFHDRLKLYL 546 (702)
Q Consensus 507 R~a~GiirIl~e~~l~l---~l~~li-~~~~l~~Fi~~Rl~~~L 546 (702)
...-.--.|+ -..... ++..+- ++..|.+++..|+-.-+
T Consensus 78 ~~~~aH~aI~-Pt~~~~~~~~~~~L~~~E~kvY~lI~rRfLA~~ 120 (139)
T 1mw9_X 78 NSQEAREAIR-PSDVNVMAESLKDMEADAQKLYQLIWRQFVACQ 120 (139)
T ss_dssp -----CCCBC-BSCTTCCGGGCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6655654556-677766652224588688899999998899873
No 35
>>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} (A:)
Probab=28.01 E-value=13 Score=16.13 Aligned_cols=92 Identities=10% Similarity=-0.011 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHC
Q ss_conf 87434468999837997887896303-64999999-999998763388878998854168-9998999999999999871
Q gi|254781094|r 506 RRATLGIIRIILENKIDIPLSQFIED-QNLILFFH-DRLKLYLHDRDIRHDLIEAILRPE-NDNLLTIVDLIKHLNEFFS 582 (702)
Q Consensus 506 RR~a~GiirIl~e~~l~l~l~~li~~-~~l~~Fi~-~Rl~~~L~e~G~~~DiI~AVl~~~-~~~~~~i~~r~~aL~~f~~ 582 (702)
||=|..+..+..+.+- +..+.+. ..+..++. ..++.+|.+-.++.+--.+++..- .+-.-.+..-+..|-+-..
T Consensus 8 ~~YA~AL~~~a~~~~~---l~~v~~~l~~~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~l~~~~~~~~~nfL~~l~~~~r 84 (134)
T 1abv_A 8 RPYAKAAFDFAVEHQS---VERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGR 84 (134)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTSHHHHHHHTCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999887199---9999999999999866999998766424659999999999876778999999999997011
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 951388999999999985
Q gi|254781094|r 583 SAKGEKFLLSAKRIFQIL 600 (702)
Q Consensus 583 ~~~~~~l~~a~KRv~NIL 600 (702)
......++..|.+..+-.
T Consensus 85 ~~~l~~I~~~f~~l~~~~ 102 (134)
T 1abv_A 85 LNALPDVLEQFIHLRAVS 102 (134)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 325899999999999997
No 36
>>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} (A:16-89)
Probab=27.94 E-value=31 Score=13.43 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 89999999840011365536886132
Q gi|254781094|r 276 EELIRLTIKTNQKCFVTRTREGVLAN 301 (702)
Q Consensus 276 ~evl~~~m~~hQkyf~~~~~~g~l~~ 301 (702)
.|++..-.+++.+++||.|++|++.-
T Consensus 16 ~~a~~~m~~~~~~~~pVvd~~g~lvG 41 (74)
T 2nyc_A 16 IDVIQMLTQGRVSSVPIIDENGYLIN 41 (74)
T ss_dssp HHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 99999999879865854357995821
No 37
>>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} (A:1-120,A:179-348)
Probab=27.79 E-value=24 Score=14.25 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHHH--HHHHCCCCCC---CC--------------------CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 635889999997499898--7651056768---77--------------------6968888743446899983799788
Q gi|254781094|r 470 TNKISITVSLADKLDTLI--NFWAINEKPS---GS--------------------KDPYALRRATLGIIRIILENKIDIP 524 (702)
Q Consensus 470 ~~~~g~ilsiaDKlDtl~--g~f~ig~~PT---GS--------------------~DPfaLRR~a~GiirIl~e~~l~l~ 524 (702)
....|..-.|++|||.|. |+=+|-..|- ++ .-.||=...---+|+-+.++++.+=
T Consensus 36 ~~~~g~~~~~~~~l~~l~~lG~~~i~l~P~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~G~~~~~~~lv~~~h~~Gi~vi 115 (290)
T 2aaa_A 36 IYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLM 115 (290)
T ss_dssp SCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 64782899999858999976998899498641776567889888886755677748555999999999998643445899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH
Q ss_conf 7896303649999999999987633---888789988
Q gi|254781094|r 525 LSQFIEDQNLILFFHDRLKLYLHDR---DIRHDLIEA 558 (702)
Q Consensus 525 l~~li~~~~l~~Fi~~Rl~~~L~e~---G~~~DiI~A 558 (702)
++-.++..++.+++.+-++.++.+. |+|.|.+..
T Consensus 116 ~D~V~~Np~V~~~l~~~~~~Wi~~~GiDGfR~Daa~~ 152 (290)
T 2aaa_A 116 VDVVPTETAVRTIWYDWVADLVSNYSVDGLRIDSVLE 152 (290)
T ss_dssp EEECCTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTT
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 8424355888888776422025306765665313333
No 38
>>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:203-286)
Probab=26.36 E-value=33 Score=13.25 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 989999999840011365536886132
Q gi|254781094|r 275 PEELIRLTIKTNQKCFVTRTREGVLAN 301 (702)
Q Consensus 275 P~evl~~~m~~hQkyf~~~~~~g~l~~ 301 (702)
..|++..-.+++.+++||.|.+|++.-
T Consensus 18 i~ea~~~m~~~~~~~lpVvd~~~~lvG 44 (84)
T 2oux_A 18 QEDVAQTIRDYDFLAVPVTDYDDHLLG 44 (84)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEE
T ss_conf 889999999749866638867996999
No 39
>>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} (A:1-161,A:396-415,A:460-738)
Probab=26.28 E-value=17 Score=15.17 Aligned_cols=351 Identities=17% Similarity=0.206 Sum_probs=159.9
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCC--------------CEEEEECCCC
Q ss_conf 02016989999999999999999999769980335886307458999849542075--------------1002302789
Q gi|254781094|r 9 YSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSP--------------EKIEERLGPR 74 (702)
Q Consensus 9 gtEElPa~~~~~~~~~l~~~~~~~l~~~~l~~~~i~~~~TPRRLav~i~~l~~~q~--------------d~~~e~kGP~ 74 (702)
-|.|-|+ -+.-+|.-++....+..+|..+.-..--.-|=|+.+-+.|.+.|. .....+|-|.
T Consensus 8 ~tDEAPa----LATySllPIv~aF~~~agi~vet~DISLAgRIlA~Fpe~L~~~Qrv~D~LaeLGeL~~~peANIIKLPN 83 (460)
T 2b0t_A 8 RTDEAPL----LATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEDQKVGNALAELGELAKTPEANIIKLPN 83 (460)
T ss_dssp ECSHHHH----HHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHHTTCGGGSCTTTCCCCHHHHHHHHTTSTTCEEEECCC
T ss_pred CCCCHHH----HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEECCC
T ss_conf 3762688----877767899999631418847620055999999846443876525860899998873798877655786
Q ss_pred CCCC---CHHHHHHHHHCCCCHHHHHHE-----EEECCCEEEEEEEEECCCCCHHHHHHH-----HHHHHHHCC--CCCE
Q ss_conf 8589---878998999779982443320-----340698289999991588509999999-----999998628--9851
Q gi|254781094|r 75 VGAG---KKAIDGFLRSTGLQTISDCQI-----KKDPKKGDVYLAVLRKPKRLIEDVLKT-----IVPVAIQKV--PWPK 139 (702)
Q Consensus 75 ~g~p---t~A~~GF~ks~gi~~~~~~~i-----~~~~~kg~~~~~~~~~~g~~~~eiL~~-----ii~~~i~~l--~~pK 139 (702)
+++- -+|+..=++++|.+..+--.- +++. +.. | -+..|-.+.-+|-+ -.|..++++ ..|.
T Consensus 84 ISASiPQL~aaIkELQ~kGy~iPdyP~~p~tdeEk~i-~ar-Y---~kvlGSAVNPVLREGNSDRRap~aVK~yAkk~PH 158 (460)
T 2b0t_A 84 ISASVPQLKAAIKELQDQGYDIPELPDNATTDEEKDI-LAR-Y---NAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPH 158 (460)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCCCCCSSCCSHHHHHH-HHH-H---HTTSSSCHHHHHCCBCEEEECCHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHH-H---HHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 6566699999999999669999999999998688999-999-9---8740344582210477643236999999985988
Q ss_pred EEC------------CCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC--CCCC----CCEE
Q ss_conf 310------------377656767416653032056786367778723102445822111102234--4577----8566
Q gi|254781094|r 140 SMR------------WSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDLKEIPCGNITYGHR--FHAP----HPIK 201 (702)
Q Consensus 140 sMr------------Wg~~~~~~~~~~FvRPirwIvaLl~~~~~~~~vi~~~~~gi~s~n~T~GHR--f~~~----~~i~ 201 (702)
+|- |-.... ++ -|||--|-|- ++-.+.|--.- .+.+ +.--
T Consensus 159 ~mG~~~~~~~~~~DI~R~~~a-----k~-~pI~DWVkLA----------------V~Rar~sg~pavFWLD~~RaHD~~l 216 (460)
T 2b0t_A 159 RMGDPTTMGTVPNVGLMAQKA-----EE-APIQDWVKLA----------------VTRSRLSGMPAVFWLDPERAHDRNL 216 (460)
T ss_dssp CCCCTTTCCCCCEEECCTTTC-----GG-HHHHHHHHHH----------------HHHHHHHCCCEEEECCTTCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCCCH-----HH-HHHHHHHHHH----------------HHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 688950014777406542584-----65-2799999999----------------9999970997588756788882999
Q ss_pred EECHHHHHHHHCCCC---EEECHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHCCCCEEEEE-------------
Q ss_conf 316799998620278---4716999999999999998885398214666788788744089846888-------------
Q gi|254781094|r 202 VQSLDHYIRDLEEAM---VLLDPECRRNAILNDAHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMG------------- 265 (702)
Q Consensus 202 I~~a~~Y~~~L~~~~---Vi~d~~~R~~~I~~~i~~~a~~~~~~~~~d~~Ll~Ev~~LvE~P~~~~G------------- 265 (702)
|...+.|...--..+ -|.++.+ .++-.+..+-+-.+..-+.-.-|=|=.|.| ||..=+|
T Consensus 217 i~kV~~yL~~hdt~gldi~Im~p~~---A~~~slerir~G~dtISVTGNVLRDYLTDL--FPILElGTSAKMLSIVPLm~ 291 (460)
T 2b0t_A 217 ASLVEKYLADHDTEGLDIQILSPVE---ATQLSIDRIRRGEDTISVTGNVLRDYNTDL--FPILELGTSAKMLSVVPLMA 291 (460)
T ss_dssp HHHHHHHHTTSCCTTCCEEEECHHH---HHHHHHHHHHTTCCCEEEECHHHHHHHHHH--HHHHHHSCSSSCEEEEEBTT
T ss_pred HHHHHHHHHHCCCCCCCEEECCHHH---HHHHHHHHHHCCCCEEEECCHHHHHHHHHH--HHHHCCCCHHHHHEEEEECC
T ss_conf 9999999975389988713117999---999999988259984876610467777546--78751442010011577525
Q ss_pred ---EECH-HHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHH--HHHHHHHHHHH-HHHH
Q ss_conf ---3077-771289899999998400113655368861324898505776554302456788--99787642259-9985
Q gi|254781094|r 266 ---SFDK-KYLCLPEELIRLTIKTNQKCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNS--RVVAARLEDAL-HFWK 338 (702)
Q Consensus 266 ---~F~~-~fL~lP~evl~~~m~~hQkyf~~~~~~g~l~~~Fi~v~N~~~~~~~~~v~~Gne--rVl~ARL~DA~-FF~~ 338 (702)
=|+. -==+-|+-|=..+-..|-|. |+-|. |++.+- +-+. -....||. +||.--|..|. =|.+
T Consensus 292 GGGlfETGAGGSAPKhVqQ~~eEnhLRW----DSLGE----FlALa~--Sle~-l~~~~~n~ka~vLa~~Ld~At~k~L~ 360 (460)
T 2b0t_A 292 GGGLFETGAGGSAPKHVQQVQEENHLRW----DSLGE----FLALAE--SFRH-ELNNNGNTKAGVLADALDKATEKLLN 360 (460)
T ss_dssp SCEEEECCSSCCCHHHHHHHHHHSCCCC----CCHHH----HHHHHH--HHHH-HHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCCC----HHHHH----HHHHHH--HHHH-HHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7702336998763589999987374430----33787----999998--9999-98645994889999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
Q ss_conf 030001111111111001122013788998842100230313455138998989999999988652---99988999999
Q gi|254781094|r 339 RDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLI---DADVALVDRAI 415 (702)
Q Consensus 339 ~D~~~~~~~~~~~~~~~~~~~dlk~~L~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l---~~~~~~~~rAa 415 (702)
+|+. | .-.+..++ .-||-| -|+.|+|+.+ ..|.++..+-+
T Consensus 361 n~ks---------------------P-sRkvgelD--------NRgSHF-------ylAlYWA~aLA~Q~~D~~L~~~Fa 403 (460)
T 2b0t_A 361 EEKS---------------------P-SRKVGEID--------NRGSHF-------WLTKFWADELAAQTEDADLAATFA 403 (460)
T ss_dssp TTCS---------------------C-CSSTTSCC--------HHHHHH-------HHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred CCCC---------------------C-CCCCCCCC--------CCCCHH-------HHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6999---------------------8-76679987--------872169-------999999999984687899999999
Q ss_pred HHHHH--HHHHHHHHCCHHHHHH---HHHHHHH
Q ss_conf 97423--6788898403457899---9999986
Q gi|254781094|r 416 VLSKA--DLCTEIVREFPELQGK---IGKEYAV 443 (702)
Q Consensus 416 ~L~Ka--DL~t~mV~EFpeLQG~---mG~~YA~ 443 (702)
-++++ +=-..+|.|+-..||. +||||--
T Consensus 404 ~iA~~L~~ne~~I~~El~~~QG~~vdiGGYY~p 436 (460)
T 2b0t_A 404 PVAEALNTGAADIDAALLAVQGGATDLGGYYSP 436 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999975999999999726986477877579
No 40
>>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:204-282)
Probab=26.02 E-value=34 Score=13.21 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
Q ss_conf 899999998400113655368861324898505
Q gi|254781094|r 276 EELIRLTIKTNQKCFVTRTREGVLANCFILVSN 308 (702)
Q Consensus 276 ~evl~~~m~~hQkyf~~~~~~g~l~~~Fi~v~N 308 (702)
.|+...-++.+.+++||.|.+|++.- .|+..+
T Consensus 38 ~~a~~~m~~~~~~~lpVvd~~g~lvG-iit~~D 69 (79)
T 2yzq_A 38 HEVALKMAKYSIEQLPVIRGEGDLIG-LIRDFD 69 (79)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTEEEE-EEEHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCEEEE-EEEHHH
T ss_conf 99999999849988999947997999-999999
No 41
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:65-109)
Probab=25.10 E-value=35 Score=13.09 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999987633888789988541
Q gi|254781094|r 540 DRLKLYLHDRDIRHDLIEAILR 561 (702)
Q Consensus 540 ~Rl~~~L~e~G~~~DiI~AVl~ 561 (702)
.|++.=|..+|++.++|+.+|+
T Consensus 23 ~~IrqeL~qKGI~~~~I~~aLa 44 (45)
T 3e3v_A 23 KVIKLNLSKKGIDDNIAEDALI 44 (45)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999986999999999998
No 42
>>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:253-368)
Probab=23.58 E-value=37 Score=12.90 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHH
Q ss_conf 8899999974998987651056768776968888743446899983799788-78963
Q gi|254781094|r 473 ISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIP-LSQFI 529 (702)
Q Consensus 473 ~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~-l~~li 529 (702)
-.+.=.|||-+=+++=+.+=|..|+...-.|-|||---=.++-...-+++-+ |.+++
T Consensus 25 d~a~rvIaDH~Ra~~f~iaDGv~PsN~grGYvlRrllRRa~r~~~~lg~~~~fl~~Lv 82 (116)
T 3hy0_A 25 NKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 82 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCSCCGGGGH
T ss_pred CHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 5457888523356650114787778567632466999999999998189741666535
No 43
>>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} (A:)
Probab=23.55 E-value=37 Score=12.90 Aligned_cols=19 Identities=37% Similarity=0.761 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 7696888874344689998
Q gi|254781094|r 499 SKDPYALRRATLGIIRIIL 517 (702)
Q Consensus 499 S~DPfaLRR~a~GiirIl~ 517 (702)
|+||...--+-+||+.+++
T Consensus 1 ssdplvvaasiigilhlil 19 (26)
T 3bkd_A 1 SSDPLVVAASIMGILHLIL 19 (26)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9984013999999999999
No 44
>>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:127-203)
Probab=23.44 E-value=38 Score=12.88 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCC
Q ss_conf 89999999840011365536886132489850577
Q gi|254781094|r 276 EELIRLTIKTNQKCFVTRTREGVLANCFILVSNIQ 310 (702)
Q Consensus 276 ~evl~~~m~~hQkyf~~~~~~g~l~~~Fi~v~N~~ 310 (702)
.+++..--+++.++||+.|++|++. .+++..+..
T Consensus 20 ~~a~~~m~~~~~~~~pVvd~~g~lv-Givt~~Dl~ 53 (77)
T 2yzq_A 20 KAALKALLLSNSMALPVVDSEGNLV-GIVDETDLL 53 (77)
T ss_dssp HHHHHHHHTCSSSEEEEECTTSCEE-EEEEGGGGG
T ss_pred CCCCHHHHCCCCCCCCCCCCCCEEE-EEEEHHHHH
T ss_conf 2200112001322211346774389-998899998
No 45
>>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3} (A:1-27,A:691-819)
Probab=23.44 E-value=38 Score=12.88 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 195138899999999----9985565312467777738568359899999999999999999985025389999999853
Q gi|254781094|r 582 SSAKGEKFLLSAKRI----FQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSI 657 (702)
Q Consensus 582 ~~~~~~~l~~a~KRv----~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L 657 (702)
-.+.-.+++..+.|. .|.+.... +....... =..+.++.+...+.....++..++++.+|..++..+..+
T Consensus 23 ~~~~~~dlv~~~~nf~nri~~~~~~~~--~~~~~~~~----~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~ai~~i~~f 96 (156)
T 1wz2_A 23 FEPNIRKEVGKLRKQIERFYELISQFA--EYEVKGNV----ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYS 96 (156)
T ss_dssp TSCCGHHHHHHHHHHHHHHHHHHHHHH--SSCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 678705554113688999999999876--41121222----332678999863078999887766667799999999999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2788875102703688689999999999999999986
Q gi|254781094|r 658 CEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILI 694 (702)
Q Consensus 658 ~~~Id~FFDnVmVm~eD~~IR~NRL~LL~~i~~~f~~ 694 (702)
..-.+.++....-=..-......=+..+..+..++.-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lLaP 133 (156)
T 1wz2_A 97 IMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAP 133 (156)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8877899987434611499999999999999999997
No 46
>>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* (A:349-497)
Probab=22.78 E-value=39 Score=12.80 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 99999999855653124677777385683598999999999999999999850253899999998532788875102---
Q gi|254781094|r 591 LSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQ--- 667 (702)
Q Consensus 591 ~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDn--- 667 (702)
..++|+.+.+.+.. +.... ++..+.+...+.....++.+++++-+|..++..+-.+....+.||+.
T Consensus 5 N~~~r~~~~~~k~~--~~~~~---------~~~d~~l~~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~p 73 (149)
T 2csx_A 5 NLYSRVVNMAHKFL--GGEVS---------GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQP 73 (149)
T ss_dssp HHHHHHHHHHHHHS--TTCBC---------CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHCCCCCCCCCC--CCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86530111224333--22222---------21101488999998888999887458999999999999999999996687
Q ss_pred -CCCCCCCHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf -703688689999999999-9999999860
Q gi|254781094|r 668 -VLVNVDDREVRDNRLSLL-QYIKNIILIV 695 (702)
Q Consensus 668 -VmVm~eD~~IR~NRL~LL-~~i~~~f~~i 695 (702)
..+.++++.-+..=+..| ..++.+..-+
T Consensus 74 w~~~~~~~~~~~~~~~~~l~~~l~~l~~ll 103 (149)
T 2csx_A 74 WALNKERKKEELQKVLYALVDGLFVLTHLL 103 (149)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 443167669999999999999999999999
No 47
>>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:244-373,A:444-461)
Probab=21.93 E-value=40 Score=12.69 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----------HCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 34578999999986236998899999997-----------3447767778863588999999749
Q gi|254781094|r 430 FPELQGKIGKEYAVLQNENISCCDAIEEH-----------LKPRGPLENVPTNKISITVSLADKL 483 (702)
Q Consensus 430 FpeLQG~mG~~YA~~~ge~~~Va~aI~eh-----------Y~P~~~~d~lP~~~~g~ilsiaDKl 483 (702)
-++||..+.+.|-.-.-+.-++|+..+|- =.||.....+|.+..+.+..+..++
T Consensus 4 l~~LQ~~ask~~g~sa~~tl~iaQ~LYEk~~~~~~~~glISYPRTDs~~l~~d~~~~~~~~l~~~ 68 (148)
T 2gai_A 4 TSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETKDGHIAFITYMRTDSTRVSDYAKEEARNLITEV 68 (148)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECSSSEECCBCCSCCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 19999999987198799999999998751313677554422334432233157777654200013
No 48
>>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli} (A:411-470)
Probab=21.82 E-value=40 Score=12.67 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99998620278471699999999999999888
Q gi|254781094|r 206 DHYIRDLEEAMVLLDPECRRNAILNDAHRLAS 237 (702)
Q Consensus 206 ~~Y~~~L~~~~Vi~d~~~R~~~I~~~i~~~a~ 237 (702)
.+|-+++.++....|+++|++++.+--..+..
T Consensus 27 ~e~D~li~~a~~~~D~~~R~~ly~~~q~il~e 58 (60)
T 1dpe_A 27 KPFEDLIQPARATDDHNKRVELYKQAQVVMHD 58 (60)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999986369999999999999999997
No 49
>>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} (A:369-468)
Probab=21.79 E-value=38 Score=12.83 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999886529998899
Q gi|254781094|r 392 RIRVLGKKIAQLIDADVALV 411 (702)
Q Consensus 392 Ri~~la~~la~~l~~~~~~~ 411 (702)
-+......+++..+.....+
T Consensus 43 ~i~~~i~~i~~~~~~k~~~~ 62 (100)
T 1j09_A 43 ALEALLRGFAAEKGVKLGQV 62 (100)
T ss_dssp HHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999959899999
No 50
>>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} (A:1-164,A:400-420,A:464-741)
Probab=21.09 E-value=21 Score=14.57 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=57.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCC--------------CEEEEE
Q ss_conf 164002016989999999999999999999769980335886307458999849542075--------------100230
Q gi|254781094|r 5 LLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSP--------------EKIEER 70 (702)
Q Consensus 5 LlEIgtEElPa~~~~~~~~~l~~~~~~~l~~~~l~~~~i~~~~TPRRLav~i~~l~~~q~--------------d~~~e~ 70 (702)
.+=--|.|-|+- +.-+|.-++....+..+|..+.-..--.-|=|+.+-+.|.+.|. .....+
T Consensus 6 IiyT~tDEAPaL----ATySllPIv~aF~~~agi~vet~DISLAgRIlA~Fpe~L~~~Qrv~D~La~LGeL~~~peANII 81 (463)
T 1itw_A 6 IIYTLTDEAPAL----ATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDTQKISDDLAELGKLATTPDANII 81 (463)
T ss_dssp EEEEECSHHHHH----HHHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHCGGGSCTTTCCCCHHHHHHHHTTSTTCEEE
T ss_pred EEEECCCCHHHH----HHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCCCCCCEE
T ss_conf 688637636888----8776789999963241883762004599999983644276641587189998887379887765
Q ss_pred CCCCCCCC---CHHHHHHHHHCCCCHH
Q ss_conf 27898589---8789989997799824
Q gi|254781094|r 71 LGPRVGAG---KKAIDGFLRSTGLQTI 94 (702)
Q Consensus 71 kGP~~g~p---t~A~~GF~ks~gi~~~ 94 (702)
|-|.+++- -+|+..=++++|.+..
T Consensus 82 KLPNISASiPQL~aaI~ELQ~kGy~iP 108 (463)
T 1itw_A 82 KLPNISASVPQLKAAIKELQQQGYKLP 108 (463)
T ss_dssp ECCCCCBCHHHHHHHHHHHHHTTCCCC
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 478665666999999999996699999
No 51
>>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} (A:39-85)
Probab=20.90 E-value=24 Score=14.23 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=8.7
Q ss_pred HHHHHHHHCCCC
Q ss_conf 225999850300
Q gi|254781094|r 331 EDALHFWKRDQN 342 (702)
Q Consensus 331 ~DA~FF~~~D~~ 342 (702)
+-|.|||+|-.+
T Consensus 5 e~A~FF~~ek~n 16 (47)
T 1xsz_A 5 EIAEFFHQQRKN 16 (47)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHHCCCC
T ss_conf 999999866889
No 52
>>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomics, PSI; HET: APK MSE; 2.40A {Mycobacterium tuberculosis H37RV} (A:190-310)
Probab=20.83 E-value=42 Score=12.54 Aligned_cols=77 Identities=5% Similarity=-0.101 Sum_probs=44.3
Q ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 82899999915885099999999999986289851310377656767416653032056786367778723102445822
Q gi|254781094|r 105 KGDVYLAVLRKPKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDLKEIP 184 (702)
Q Consensus 105 kg~~~~~~~~~~g~~~~eiL~~ii~~~i~~l~~pKsMrWg~~~~~~~~~~FvRPirwIvaLl~~~~~~~~vi~~~~~gi~ 184 (702)
++.+.+.-+...|-+.++. +.+.+.+..+-.+++=.++... -.-.||..|+=- ..|+.+++.+++
T Consensus 32 ~~~l~~vg~VgtGfs~~~~--~~l~~~l~~~~~~~~p~~~~~~-----~~~~~~~vw~~P--------~~V~eV~~~~~t 96 (121)
T 1vs0_A 32 PGGLQFAGRVGTGLSEREL--ANLKEXLAPLHTDESPFDVPLP-----ARDAKGITYVKP--------ALVAEVRYSEWT 96 (121)
T ss_dssp TTEEEEEEEECSSCCHHHH--HHHHHHHGGGBCSSCSBSSCCC-----HHHHTTEEEBCT--------TCEEEEEESCBC
T ss_pred CCCEEEEEEECCCCCHHHH--HHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCEEECC--------EEEEEEEEEEEC
T ss_conf 9925899572378989999--9999998865156787666677-----555788689764--------399999950312
Q ss_pred CCCCCCCCCCCC
Q ss_conf 111102234457
Q gi|254781094|r 185 CGNITYGHRFHA 196 (702)
Q Consensus 185 s~n~T~GHRf~~ 196 (702)
++..-|=.||.+
T Consensus 97 ~g~~lR~P~f~~ 108 (121)
T 1vs0_A 97 PEGRLRQSSWRG 108 (121)
T ss_dssp TTSCBTTCEEEE
T ss_pred CCCCEECCCEEE
T ss_conf 899788670539
Done!