HHSEARCH alignment of GI: 254781094 and SCOP domain: d1vqra_

Alignment

Probab=93.16  E-value=0.24  Score=25.26  Aligned_cols=85  Identities=13%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             89999999862369988999999973447767778863588999999749989876510567687769688887434468
Q gi|254781094|r  434 QGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGII  513 (702)
Q Consensus       434 QG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~Gii  513 (702)
                      .+.+|..-+++=|.+++++++|+.|..|..+.+.  ......+|.+||-+   +       .+.|+.+|++... ++..+
T Consensus       189 h~~ig~~l~~~W~lP~~i~~~i~~hh~p~~a~~~--~~~~~~~v~lA~~l---~-------~~~~~~~~~~~~~-~~~~~  255 (286)
T d1vqra_         189 HISFLGFLLHRWNFDDVLIESICFVRTPHAAREK--VKKSAYALAITDHL---F-------APHDGSSPFNAKA-AVALL  255 (286)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTT--THHHHHHHHHHHHH---H-------CTTTTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--HHHHHHHHHHHHHH---H-------HHCCCCCCHHHHH-HHHHH
T ss_conf             9999999999869999999999985896218830--78899999999999---8-------7605799610567-88877


Q ss_pred             HHHHHCCCCCCHHHHHHH
Q ss_conf             999837997887896303
Q gi|254781094|r  514 RIILENKIDIPLSQFIED  531 (702)
Q Consensus       514 rIl~e~~l~l~l~~li~~  531 (702)
                      .-....++++++..+.++
T Consensus       256 ~~~~~~~l~~d~~~l~~~  273 (286)
T d1vqra_         256 KEAKTQGINFDLNNLLSK  273 (286)
T ss_dssp             HHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHH
T ss_conf             899974502679999998

SCOP domain information

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: modified HD domain
domain: Hypothetical protein Cj0248
species: Campylobacter jejuni [TaxId: 197]