HHSEARCH alignment of GI: 254781094 and SCOP domain: d3b57a1

Alignment
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}
Probab=96.90  E-value=0.0054  Score=36.47  Aligned_cols=99  Identities=15%  Similarity=0.081  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHCC
Q ss_conf             89989899999999886529998899999997423678889840345789999999862369988----99999997344
Q gi|254781094|r  386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEEHLKP  461 (702)
Q Consensus       386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~ehY~P  461 (702)
                      =++-+.|+..+|..|+..-+.+...+.-||+|=  |..-.=-..-++-.--+...+....|.+++    |+.+|..|=..
T Consensus        26 d~~H~~rV~~~A~~Ia~~e~~d~~~v~~AAlLH--Di~~~k~~~~~~~~a~~a~~~L~~~g~~~~~i~~V~~~I~~~s~~  103 (201)
T d3b57a1          26 DWSHIKRVWKLSKEIQSKEGGDLFTIELAALFH--DYSDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSVSFK  103 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHT--TCCC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999987776499999999986--402224667277779999999987899999999999999966621


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7767778863588999999749989
Q gi|254781094|r  462 RGPLENVPTNKISITVSLADKLDTL  486 (702)
Q Consensus       462 ~~~~d~lP~~~~g~ilsiaDKlDtl  486 (702)
                      ...+..-|.|..+.+|.=|||||.|
T Consensus       104 ~~~~~~~~~t~e~~iv~DADrLDal  128 (201)
T d3b57a1         104 KGKNTFKALTIEEKIVQDADRLDAI  128 (201)
T ss_dssp             -------CCCHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             4578889767889999989999753


SCOP domain information

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein Lin1889
species: Listeria innocua [TaxId: 1642]