Query gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 702
No_of_seqs 174 out of 1458
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 11:56:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781094.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7ua1 a.27.1.1 (A:484-607) A 98.5 5.9E-07 4.3E-11 63.6 10.4 112 586-697 3-114 (124)
2 d2pjqa1 a.211.1.1 (A:1-215) Un 97.5 0.00032 2.3E-08 44.9 9.1 107 379-487 19-129 (215)
3 d2pq7a1 a.211.1.1 (A:1-217) Pr 97.1 0.0045 3.3E-07 37.0 10.5 99 384-487 31-137 (217)
4 d1iq0a1 a.27.1.1 (A:467-592) A 97.1 0.0054 3.9E-07 36.5 10.8 105 586-696 4-115 (126)
5 d3b57a1 a.211.1.1 (A:1-201) Un 96.9 0.0054 4E-07 36.5 9.7 99 386-486 26-128 (201)
6 d2qgsa1 a.211.1.1 (A:1-216) Un 96.6 0.0087 6.3E-07 35.1 8.9 102 383-487 23-129 (216)
7 d3dtoa1 a.211.1.1 (A:2-213) Un 96.3 0.0095 6.9E-07 34.8 7.6 97 387-486 26-126 (212)
8 d3djba1 a.211.1.1 (A:2-214) Un 96.1 0.0042 3E-07 37.3 4.9 99 385-486 24-126 (213)
9 d1vqra_ a.211.1.3 (A:) Hypothe 93.2 0.24 1.7E-05 25.3 9.6 85 434-531 189-273 (286)
10 d1r89a3 d.58.16.2 (A:258-437) 90.8 0.43 3.2E-05 23.5 11.8 117 4-130 22-138 (180)
11 d1pfva1 a.27.1.1 (A:389-550) M 80.3 1.5 0.00011 19.8 6.0 68 591-668 3-70 (162)
12 d1xx7a_ a.211.1.1 (A:) Oxetano 79.4 0.99 7.2E-05 21.0 3.8 107 384-503 28-146 (172)
13 d1ynba1 a.211.1.1 (A:7-173) Hy 77.3 1.8 0.00013 19.2 9.8 99 383-492 30-129 (167)
14 d1rqga1 a.27.1.1 (A:397-606) M 67.7 3 0.00022 17.8 11.6 39 627-665 36-74 (210)
15 d2gfna1 a.4.1.9 (A:4-80) Proba 46.5 5.1 0.00037 16.2 2.1 24 218-241 1-24 (77)
16 d1riqa1 a.203.1.1 (A:237-457) 38.3 8.7 0.00064 14.6 8.7 55 475-529 29-84 (221)
17 d2d5ba1 a.27.1.1 (A:349-500) M 28.6 12 0.0009 13.5 7.9 74 593-677 9-86 (152)
18 d1r31a2 d.179.1.1 (A:3-110,A:2 24.9 6.8 0.0005 15.3 -0.1 69 218-300 10-85 (266)
No 1
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.51 E-value=5.9e-07 Score=63.60 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 38899999999998556531246777773856835989999999999999999998502538999999985327888751
Q gi|254781094|r 586 GEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF 665 (702)
Q Consensus 586 ~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FF 665 (702)
|.=+.=++-|+.+|+.+....+.......|.+++.+++|++|...+......+..+.....-......+.+|....+.|+
T Consensus 3 gpYiqYa~aRi~SIlrk~~~~~~~~~~~~~~~~l~~~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY 82 (124)
T d1f7ua1 3 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCY 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999987337870320344322269999999999999889999999999989999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 02703688689999999999999999986068
Q gi|254781094|r 666 DQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 (702)
Q Consensus 666 DnVmVm~eD~~IR~NRL~LL~~i~~~f~~iaD 697 (702)
++..|.++|++++..||.|+..++..+....+
T Consensus 83 ~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~ 114 (124)
T d1f7ua1 83 DVLWVAGQTEELATARLALYGAARQVLYNGMR 114 (124)
T ss_dssp HHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76636799999999999999999999999865
No 2
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=97.55 E-value=0.00032 Score=44.88 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHH
Q ss_conf 134551389989899999999886529998899999997423678889840345789999999862369988----9999
Q gi|254781094|r 379 FHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDA 454 (702)
Q Consensus 379 F~~~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~a 454 (702)
-+..-|-=++-+.|+..+|..|+..-+.|...+.-||+|==+. -.-...=|+-.+-+-.......|.+++ |+.+
T Consensus 19 ~~~~~~Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDig--d~k~~~~~~~~~~~~~~~L~~~~~~~~~i~~I~~i 96 (215)
T d2pjqa1 19 AHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI--DDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAI 96 (215)
T ss_dssp TTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--C---------CHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 4787767889999999999999988599999999999998860--10035762468999999987489898999999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999734477677788635889999997499898
Q gi|254781094|r 455 IEEHLKPRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 455 I~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
|.-|.......+.-|.|..+.||.-|||||.|-
T Consensus 97 I~~~s~s~~~~~~~p~t~Ea~Iv~DADrLDalG 129 (215)
T d2pjqa1 97 IDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIG 129 (215)
T ss_dssp HTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 985788722689998689999999999997345
No 3
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
Probab=97.06 E-value=0.0045 Score=37.00 Aligned_cols=99 Identities=21% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHCCCC----HHHHHHH
Q ss_conf 13899898999999998865299988999999974236788898403457899999998----623699----8899999
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYA----VLQNEN----ISCCDAI 455 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA----~~~ge~----~~Va~aI 455 (702)
+-=++-+.|+..+|..|+...+.|...+.-||.|==....-.... +.-++..|...| ...|.+ ++|+.||
T Consensus 31 sHd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AALLHDIg~~~~~~~--~~~h~~~~a~~a~~~L~~~~~~~~~i~~I~~aI 108 (217)
T d2pq7a1 31 AHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALT--GVDHAESGAEYASGLLPTMGFDISFVAEVSKAI 108 (217)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHHH--CCCHHHHHHHHHHHHGGGGTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHCCCC--CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 767799999999999999884999999999998514200000577--757799999999998886698779999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99734477677788635889999997499898
Q gi|254781094|r 456 EEHLKPRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 456 ~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
..| .++...-|.|+.+.||.-|||||.|-
T Consensus 109 ~~H---~~~~~~~~~t~E~~Iv~DADrLDaiG 137 (217)
T d2pq7a1 109 RSH---RYSGGLTPTSLTGKILQDADRLDAIG 137 (217)
T ss_dssp HHC---C-----CCCSHHHHHHHHHHHGGGSS
T ss_pred HHC---CCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 973---87578996311775999999880246
No 4
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.06 E-value=0.0054 Score=36.52 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 38899999999998556531246777773856835989999999999999999998502538999999985327888751
Q gi|254781094|r 586 GEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF 665 (702)
Q Consensus 586 ~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FF 665 (702)
|.=+.=++-|+..|+.+..... ..+.. ..++.|++|...+.....-+..+....+=......+.+|....+.|.
T Consensus 4 gpYiqYa~AR~~SIl~k~~~~~-----~~~~~-~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY 77 (126)
T d1iq0a1 4 GPYVQYAHARAHSILRKAGEWG-----APDLS-QATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYY 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC-----CCCGG-GCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-----CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999998641249-----95300-07888899999999999999999988866899999999999999999
Q ss_pred CCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0270-------368868999999999999999998606
Q gi|254781094|r 666 DQVL-------VNVDDREVRDNRLSLLQYIKNIILIVI 696 (702)
Q Consensus 666 DnVm-------Vm~eD~~IR~NRL~LL~~i~~~f~~ia 696 (702)
++.. |.++|+.++..||.|...++..+..-.
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~gL 115 (126)
T d1iq0a1 78 NARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGL 115 (126)
T ss_dssp HCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86024443365247889999999999999999999985
No 5
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}
Probab=96.90 E-value=0.0054 Score=36.47 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHCC
Q ss_conf 89989899999999886529998899999997423678889840345789999999862369988----99999997344
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEEHLKP 461 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~ehY~P 461 (702)
=++-+.|+..+|..|+..-+.+...+.-||+|= |..-.=-..-++-.--+...+....|.+++ |+.+|..|=..
T Consensus 26 d~~H~~rV~~~A~~Ia~~e~~d~~~v~~AAlLH--Di~~~k~~~~~~~~a~~a~~~L~~~g~~~~~i~~V~~~I~~~s~~ 103 (201)
T d3b57a1 26 DWSHIKRVWKLSKEIQSKEGGDLFTIELAALFH--DYSDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSVSFK 103 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHT--TCCC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999987776499999999986--402224667277779999999987899999999999999966621
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7767778863588999999749989
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
...+..-|.|..+.+|.=|||||.|
T Consensus 104 ~~~~~~~~~t~e~~iv~DADrLDal 128 (201)
T d3b57a1 104 KGKNTFKALTIEEKIVQDADRLDAI 128 (201)
T ss_dssp -------CCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 4578889767889999989999753
No 6
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=96.59 E-value=0.0087 Score=35.09 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Q ss_conf 513899898999999998865299-9889999999742367888984034578999999986236998----89999999
Q gi|254781094|r 383 IGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENI----SCCDAIEE 457 (702)
Q Consensus 383 LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~----~Va~aI~e 457 (702)
-|-=++-+.|+..+|..|+..-+. +...+.-||+|== ..-.- ...++..--+.+.+....|.++ .|+.+|..
T Consensus 23 ~~Hd~~H~~RV~~~A~~Ia~~e~~~d~~vv~~AAlLHD--igd~k-~~~e~~~a~~a~~~L~~~g~~~~~i~~I~~~I~~ 99 (216)
T d2qgsa1 23 TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHD--TVDSK-LTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKH 99 (216)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTT--TTCCS-SSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCC-CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 87687999999999999998749972899999999863--03212-3432678999999998879999999999999998
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 734477677788635889999997499898
Q gi|254781094|r 458 HLKPRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 458 hY~P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
|=.-.+.....|.|..+.||.=|||||.|-
T Consensus 100 hS~s~~~~~~~p~tle~~iv~DADrLDalG 129 (216)
T d2qgsa1 100 MSYRAGKNNHVKLSIDGEIVRDADRLDAIG 129 (216)
T ss_dssp TC-------CCCCCHHHHHHHHHHHHTTSH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHCHHHHHCC
T ss_conf 451158888898678889998432887411
No 7
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}
Probab=96.29 E-value=0.0095 Score=34.83 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHCCC
Q ss_conf 9989899999999886529998899999997423678889840345789999999862369988----999999973447
Q gi|254781094|r 387 GERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEEHLKPR 462 (702)
Q Consensus 387 ~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~ehY~P~ 462 (702)
++-+.|+..+|..|+..-+.|...+.-||+|==+ .-.=-..-++-...+...+....|.+++ |+.+|..|=...
T Consensus 26 ~~H~~rV~~~A~~Ia~~e~~D~~vv~~aAllHDi--g~~~~~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hs~~~ 103 (212)
T d3dtoa1 26 WYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDL--IDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKG 103 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHST--TC-------CHHHHHHHHHHHTTTCCHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7999999999999998849999999999997310--01345652456899999999888789999999999999977125
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 767778863588999999749989
Q gi|254781094|r 463 GPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 463 ~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
. ...-|.|..+.+|+=|||||.|
T Consensus 104 ~-~~~~~~t~e~~iv~DADrLDal 126 (212)
T d3dtoa1 104 G-HGQSLATREAMVVQDADRLDAL 126 (212)
T ss_dssp -------CCHHHHHHHHHHHGGGS
T ss_pred C-CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8-8999999899999938999871
No 8
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}
Probab=96.07 E-value=0.0042 Score=37.25 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHC
Q ss_conf 389989899999999886529998899999997423678889840345789999999862369988----9999999734
Q gi|254781094|r 385 TQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEEHLK 460 (702)
Q Consensus 385 s~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~ehY~ 460 (702)
-=++-+.|+..+|..|+..-+.|...+.-||+|= |+...--..-.+..--+.+.+....|.+++ |+.+|..|=.
T Consensus 24 Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AAlLH--Dig~~k~~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hs~ 101 (213)
T d3djba1 24 HDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLH--DVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMSY 101 (213)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTH--HHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHTTCCC-
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 8869999999999999987599999999999997--40431124522236999999998879899999999999998375
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47767778863588999999749989
Q gi|254781094|r 461 PRGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 461 P~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
.... ..-|.|..+.||.=|||||.|
T Consensus 102 s~~~-~~~~~t~e~~Iv~DADrLDal 126 (213)
T d3djba1 102 KGGH-GGKVESIEGKLVQDADRLDAL 126 (213)
T ss_dssp -----------HHHHHHHHHHHTTTS
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHC
T ss_conf 5689-999988899999877788623
No 9
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]}
Probab=93.16 E-value=0.24 Score=25.26 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999862369988999999973447767778863588999999749989876510567687769688887434468
Q gi|254781094|r 434 QGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGII 513 (702)
Q Consensus 434 QG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~Gii 513 (702)
.+.+|..-+++=|.+++++++|+.|..|..+.+. ......+|.+||-+ + .+.|+.+|++... ++..+
T Consensus 189 h~~ig~~l~~~W~lP~~i~~~i~~hh~p~~a~~~--~~~~~~~v~lA~~l---~-------~~~~~~~~~~~~~-~~~~~ 255 (286)
T d1vqra_ 189 HISFLGFLLHRWNFDDVLIESICFVRTPHAAREK--VKKSAYALAITDHL---F-------APHDGSSPFNAKA-AVALL 255 (286)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTT--THHHHHHHHHHHHH---H-------CTTTTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--HHHHHHHHHHHHHH---H-------HHCCCCCCHHHHH-HHHHH
T ss_conf 9999999999869999999999985896218830--78899999999999---8-------7605799610567-88877
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 999837997887896303
Q gi|254781094|r 514 RIILENKIDIPLSQFIED 531 (702)
Q Consensus 514 rIl~e~~l~l~l~~li~~ 531 (702)
.-....++++++..+.++
T Consensus 256 ~~~~~~~l~~d~~~l~~~ 273 (286)
T d1vqra_ 256 KEAKTQGINFDLNNLLSK 273 (286)
T ss_dssp HHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
T ss_conf 899974502679999998
No 10
>d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=90.81 E-value=0.43 Score=23.47 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=86.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 01640020169899999999999999999997699803358863074589998495420751002302789858987899
Q gi|254781094|r 4 FLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSPEKIEERLGPRVGAGKKAID 83 (702)
Q Consensus 4 lLlEIgtEElPa~~~~~~~~~l~~~~~~~l~~~~l~~~~i~~~~TPRRLav~i~~l~~~q~d~~~e~kGP~~g~pt~A~~ 83 (702)
+.++.-+.++|..-+.+-.+-..+.+.+.|..++...=...+++.-.|-.++++ |....-.......|||+-.- .-++
T Consensus 22 ~~v~f~~pd~vdDil~pQl~R~~~sl~~~Le~~GF~Vlrs~~~~de~~~~ll~E-l~~~~lp~v~~h~GPpv~~~-~~~~ 99 (180)
T d1r89a3 22 FAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPLRSAFKASEEFCYLLFE-CQIKEISRVFRRMGPQFEDE-RNVK 99 (180)
T ss_dssp EEEEEECCSCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECSSEEEEEEE-ESCSCCCSEEEEEEEETTCH-HHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEE-EEECCCCCCEEECCCCCCCC-CHHH
T ss_conf 999948999985322589999999999999987998998788746987999999-74054567263029596210-2288
Q ss_pred HHHHHCCCCHHHHHHEEEECCCEEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 89997799824433203406982899999915885099999999999
Q gi|254781094|r 84 GFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLIEDVLKTIVPV 130 (702)
Q Consensus 84 GF~ks~gi~~~~~~~i~~~~~kg~~~~~~~~~~g~~~~eiL~~ii~~ 130 (702)
+|..+++.- -..+ .+|.||..+.+ +-..+.++|.+.+..
T Consensus 100 kFi~k~~~~---g~~I----~~gRl~~~~~R-ky~~a~~~l~~~l~~ 138 (180)
T d1r89a3 100 KFLSRNRAF---RPFI----ENGRWWAFEMR-KFTTPEEGVRSYAST 138 (180)
T ss_dssp HHHHSCCSS---CCEE----ETTEEEEEEEC-SCSSHHHHHHHHHHH
T ss_pred HHHHHCCCC---CCEE----ECCEEEEEEEE-EECCHHHHHHHHHHH
T ss_conf 887735766---8628----89999999977-507899999999861
No 11
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=80.26 E-value=1.5 Score=19.84 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999998556531246777773856835989999999999999999998502538999999985327888751027
Q gi|254781094|r 591 LSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV 668 (702)
Q Consensus 591 ~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV 668 (702)
....|+.+.+.+.. ++.++. ...+..|.+.+.+...++...+++.+|..+++.+-.+...+|.||+.-
T Consensus 3 NL~~R~~~~i~k~~--~g~vp~--------~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~ 70 (162)
T d1pfva1 3 NLASRNAGFINKRF--DGVLAS--------ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQ 70 (162)
T ss_dssp HHHHHHHHHHHHHS--TTBCCS--------SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC--CCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25987999998756--991989--------978899999999999999999998769999999999999999999997
No 12
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]}
Probab=79.36 E-value=0.99 Score=21.03 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH-----
Q ss_conf 1389989899999999886529-----998899999997423678889840345789999999862369988999-----
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLID-----ADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCD----- 453 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~-----~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~----- 453 (702)
=|+.+-+-|+.-+|..++...+ .|...+-..|.+ -||+--.++-.|. -+..|+..+........
T Consensus 28 EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~--HDl~E~~~GDip~----~~~~~~~~~~~e~~~~~~l~~~ 101 (172)
T d1xx7a_ 28 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAII--HDLGEAIITDLPL----SAQKYLNKEEAEAKALKDVLPE 101 (172)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH--TTTTHHHHCCCCH----HHHTTSCHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHCCCCCC----CCHHHHHHHHHHHHHHHHHCCH
T ss_conf 639999999999999987887644434689999999998--5128877079874----0021246999999999871403
Q ss_pred --HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf --99997344776777886358899999974998987651056768776968
Q gi|254781094|r 454 --AIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPY 503 (702)
Q Consensus 454 --aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPf 503 (702)
...+.|.. .+|+.+.++..+||+|+++=++--...--+.-++|
T Consensus 102 ~~~l~~eye~-------~~s~Ea~~vk~~DkL~~~lqa~~y~~~g~~~~~ef 146 (172)
T d1xx7a_ 102 YTELFEEYSK-------ALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEF 146 (172)
T ss_dssp GHHHHHHHHH-------CCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGG
T ss_pred HHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 6889999885-------55489999999988999999999998268757999
No 13
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=77.25 E-value=1.8 Score=19.24 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 51389989899999999886529998899999997423-67888984034578999999986236998899999997344
Q gi|254781094|r 383 IGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA-DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKP 461 (702)
Q Consensus 383 LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~Ka-DL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~P 461 (702)
-=|+.|-+-|+.-++..++...+.+..+..|++.+|-. ||.=-.+|-.|... +.|. ...+.-+..+..-
T Consensus 30 ~EsVAeHs~~vA~ia~~la~~~~~~~~~~~k~~~maL~HDl~E~~~GDi~~~~----k~~~---~~~e~~~~e~~~~--- 99 (167)
T d1ynba1 30 PESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHKIA----RRYV---SCDEEGAREEQLS--- 99 (167)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCCCCTTG----GGTC---CCCHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHCC---CCCHHHHHHHHHH---
T ss_conf 98889999999999999987818852109999999999999997548973667----7602---3756778899999---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7767778863588999999749989876510
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTLINFWAI 492 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~i 492 (702)
...-+--+|+.+.++-.+||++++.-.+.-
T Consensus 100 -w~Eye~~~s~ea~~vk~~Dkle~~lQa~ey 129 (167)
T d1ynba1 100 -WMESKPDFSDVEVYVSDADKLELAFQGVEY 129 (167)
T ss_dssp -TCSSCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -998862634799999998689999999999
No 14
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=67.67 E-value=3 Score=17.76 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998502538999999985327888751
Q gi|254781094|r 627 LYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF 665 (702)
Q Consensus 627 L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FF 665 (702)
|.+.+.....++..++++.+|..++..+.++..-.|.||
T Consensus 36 l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi 74 (210)
T d1rqga1 36 ALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYF 74 (210)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999888999999877679999999999999999999
No 15
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=46.54 E-value=5.1 Score=16.16 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=10.4
Q ss_pred EECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 716999999999999998885398
Q gi|254781094|r 218 LLDPECRRNAILNDAHRLASAVGL 241 (702)
Q Consensus 218 i~d~~~R~~~I~~~i~~~a~~~~~ 241 (702)
|+|+++||+.|++....+-.+.|.
T Consensus 1 ivd~~~~r~~Il~aa~~l~~~~G~ 24 (77)
T d2gfna1 1 IVDHDERRRALADAVLALIAREGI 24 (77)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 989899999999999999998590
No 16
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=38.27 E-value=8.7 Score=14.55 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHH
Q ss_conf 99999974998987651056768776968888743446899983799788-78963
Q gi|254781094|r 475 ITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIP-LSQFI 529 (702)
Q Consensus 475 ~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~-l~~li 529 (702)
+.=-|||-+=+++=+.+=|..|+-..-.|=|||---=-+|....-+++-+ |.+++
T Consensus 29 a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~lg~~~~~l~~lv 84 (221)
T d1riqa1 29 ALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGV 84 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH
T ss_pred EEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 02205778999999995677788677742799999999999988624542245668
No 17
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=28.58 E-value=12 Score=13.51 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC----
Q ss_conf 9999998556531246777773856835989999999999999999998502538999999985327888751027----
Q gi|254781094|r 593 AKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV---- 668 (702)
Q Consensus 593 ~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV---- 668 (702)
..|+...+.+. .++.++...+.+.. ..+.++..++..++++-+|.++++.+.++...+|.||+.-
T Consensus 9 v~R~~~~~~k~--~~g~vP~~~~~~~~---------~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~yi~~~~PW~ 77 (152)
T d2d5ba1 9 VQRTRAMLFRF--AEGRIPEPVAGEEL---------AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWE 77 (152)
T ss_dssp HHHHHHHHHHH--STTBCCCCCCCGGG---------GGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHH--CCCCCCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997--79908998435889---------99999999999999998768999999999999889999988877
Q ss_pred CCCCCCHHH
Q ss_conf 036886899
Q gi|254781094|r 669 LVNVDDREV 677 (702)
Q Consensus 669 mVm~eD~~I 677 (702)
++-++++..
T Consensus 78 l~k~d~~~~ 86 (152)
T d2d5ba1 78 LFKKEPEEA 86 (152)
T ss_dssp HHHHCHHHH
T ss_pred HHCCCHHHH
T ss_conf 620112889
No 18
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=24.85 E-value=6.8 Score=15.27 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=43.4
Q ss_pred EECHHHHHHHHHHHH-------HHHHHHCCCEECCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHHHHCCCE
Q ss_conf 716999999999999-------9988853982146667887887440898468883077771289899999998400113
Q gi|254781094|r 218 LLDPECRRNAILNDA-------HRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCF 290 (702)
Q Consensus 218 i~d~~~R~~~I~~~i-------~~~a~~~~~~~~~d~~Ll~Ev~~LvE~P~~~~G~F~~~fL~lP~evl~~~m~~hQkyf 290 (702)
=++.+||++.|.+.. ..+....+.....-+.++|-+.+-+.-|.-+.|.|-=. ...-|.
T Consensus 10 kls~~eR~~~l~~~~~l~~e~~~~L~~~~~l~~~~ad~miEN~IG~~~lP~Gva~~~~In--------------g~~y~v 75 (266)
T d1r31a2 10 NLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQIN--------------GRDVLV 75 (266)
T ss_dssp GSCHHHHHHHHHHHHTCCHHHHHHHHSSCCSCHHHHHHHSSSEEEEEEEEEEEECSCEET--------------TEECCE
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEEC--------------CEEEEC
T ss_conf 399999999999987889999998851799867787242020230067632235679986--------------808874
Q ss_pred EEECCCCCCC
Q ss_conf 6553688613
Q gi|254781094|r 291 VTRTREGVLA 300 (702)
Q Consensus 291 ~~~~~~g~l~ 300 (702)
|+-..++.+.
T Consensus 76 PmAteE~svV 85 (266)
T d1r31a2 76 PLVVEEPSIV 85 (266)
T ss_dssp EEECSCTTHH
T ss_pred CCCCCCHHHH
T ss_conf 4102421678
Done!