RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(702 letters)
>gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 639 bits (1650), Expect = 0.0
Identities = 271/725 (37%), Positives = 399/725 (55%), Gaps = 60/725 (8%)
Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60
M D LLEI +EE+PA+ AAE L+ LKE G+ ++ + + TP RL L +KGL+
Sbjct: 3 MKDLLLEIGTEELPAKALRSAAEQLAKKFTAGLKEAGLSFEGVEVFATPRRLALLVKGLA 62
Query: 61 PHSPEKIEERLGPRV-------GAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVL 113
P++ EE+ GP V G KA +GF R G+ ++ D + +KD KKG+ Y+ +
Sbjct: 63 EAQPDREEEKKGPPVKAAFDADGKPTKAAEGFARGQGV-SVEDLERRKDDKKGEEYVYRV 121
Query: 114 RKPK-RLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAK 172
+K + + E++L IVP AI +P+PKSMRW + +IRP+ I+ +L
Sbjct: 122 KKEEGQPTEELLPEIVPEAIASLPFPKSMRWGS-----KDVRFIRPIHWIVALL-----G 171
Query: 173 EKIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDA 232
+++I ++ I G IT GHRF P I + S D Y+ L E V+ DPE R+ IL
Sbjct: 172 DEVIPFEILGIKSGRITRGHRFLGPGEITIDSADDYVEKLREGKVIADPEERKAIILEQI 231
Query: 233 HRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVT 292
LAS +G D+DLLEE+ LVE+ V +G F++K+L LPEE++ T+K +QK F
Sbjct: 232 EELASKLGGVADIDEDLLEEVTALVEYPTVLLGKFEEKFLELPEEVLITTMKEHQKYFPV 291
Query: 293 RTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKE 352
+ G L FI VSN + D I++GN +V+ ARL DA F+K D
Sbjct: 292 FDQGGKLLPHFIFVSNGEPKDP-ENIIEGNEKVLRARLSDAEFFFKED------------ 338
Query: 353 SALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVD 412
L KPL+ R+ +L V FH K+GT ++V RI+ + IA + ADV D
Sbjct: 339 --------LKKPLESRLPKLK--TVTFHEKLGTLADKVERIKKIAAYIAPQLGADVEDAD 388
Query: 413 RAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNK 472
RA +L+KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P+
Sbjct: 389 RAALLAKADLVTEMVGEFPELQGIMGEYYALHDGEDEEVALAIEEHYLPRFAGDELPSTP 448
Query: 473 ISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE-- 530
+ V+LADKLDTL+ F+ I P+GSKDPYALRRA LGI+RIILE +D+ L + ++
Sbjct: 449 VGAVVALADKLDTLVGFFGIGLIPTGSKDPYALRRAALGILRIILEKNLDLDLEELLDKA 508
Query: 531 -------------DQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHL 577
+ L+ FF RL+ YL D R D+I+A+L +LL I+ + L
Sbjct: 509 VASFKSKLTNAKVLEELLDFFLGRLRTYLQDEGYRKDIIDAVLALNPTDLLDIIARAEAL 568
Query: 578 NEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTH 637
EF + + + KR+ ILA K +++S + P +AEK L+ +
Sbjct: 569 QEFLDLPEAKALAAANKRVSNILA---KAEKKLSGTVDPSLFEEDAEKALFEALQALKPK 625
Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697
+ E++ K Y L + PI+ FFD V+V +D +R+NRL+LL ++ + L V +
Sbjct: 626 VAEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVAD 685
Query: 698 VQKIV 702
+V
Sbjct: 686 FSLLV 690
>gnl|CDD|145318 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit.
Length = 549
Score = 592 bits (1529), Expect = e-169
Identities = 211/581 (36%), Positives = 330/581 (56%), Gaps = 59/581 (10%)
Query: 4 FLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHS 63
LLEI +EE+PA+ KA E L+ ++ LKE + + ++ + TP RL + ++GL+
Sbjct: 1 LLLEIGTEELPAKFLKKALEQLAELITKGLKEARLSFGEVKVFATPRRLAVLVEGLAEKQ 60
Query: 64 PEKIEERLGPRVGAGK-------KAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKP 116
P+K EE+ GP V KA +GF RS G+ ++ D +I++ KG+ A +
Sbjct: 61 PDKEEEKKGPPVKIAFDADGNPTKAAEGFARSQGV-SVDDLEIRET-GKGEYLFAKKEEK 118
Query: 117 KRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKII 176
R ++L I+P AI+ +P+PKSMRW ++RP++ ++ +L ++++
Sbjct: 119 GRPTAELLPEILPEAIKSLPFPKSMRWGD-----GDLRFVRPIRWLVALL-----GDEVV 168
Query: 177 DLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLA 236
++ I GN T GHRF P PI + S D Y L +A V++D E R+ I LA
Sbjct: 169 PFEILGITSGNTTRGHRFLGPGPITIASADDYEETLRKAGVIVDFEERKELIREQIEALA 228
Query: 237 SAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTRE 296
+ +G ++ D+DLLEE+ GLVEW +GSFD+++L LP E++ ++K +Q+ F ++
Sbjct: 229 AELGGKVDIDEDLLEEVTGLVEWPVALLGSFDEEFLELPPEVLITSMKEHQRYFPVYDKD 288
Query: 297 GVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALK 356
G L FI VSN ++ D +++GN RV+ ARL DA F++ D
Sbjct: 289 GKLLPYFITVSNGESKDP-ENVIKGNERVLRARLADAEFFYEEDLK-------------- 333
Query: 357 FNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLID-ADVALVDRAI 415
PL+ R+ +L VVF K+G+ ++V RI L KIA+ + AD +RA
Sbjct: 334 ------TPLESRVEKLK--KVVFQEKLGSLYDKVERIEALAGKIAEQLGEADAEDAERAA 385
Query: 416 VLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISI 475
+L KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P++ +
Sbjct: 386 LLCKADLVTEMVGEFPELQGIMGRYYALHDGEDEEVALAIEEHYLPRFAGDALPSSPVGA 445
Query: 476 TVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED---- 531
V+LADKLDTL+ + I E P+GSKDP+ALRRA LGI+RI++E + + L + +E
Sbjct: 446 AVALADKLDTLVGIFGIGEIPTGSKDPFALRRAALGILRILIEKGLPLDLRELLEKAASL 505
Query: 532 ------------QNLILFFHDRLKLYLHDRDIRHDLIEAIL 560
++L+ FF DRL+ L ++ IR+D+I+A+L
Sbjct: 506 YGDKLLDAEDVVEDLLEFFLDRLRSLLEEQGIRYDVIDAVL 546
>gnl|CDD|147737 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain in
Arginyl and glycyl tRNA synthetase. This domain is known
as the DALR domain after characteristic conserved amino
acids.
Length = 117
Score = 56.1 bits (136), Expect = 3e-08
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 594 KRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDL 653
RI IL + I+L+I LL E EK L + F ++E+ + H++ +
Sbjct: 6 ARICSILRKAGELG--INLDIDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANY 63
Query: 654 LHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692
L+ + F++ V +D E R+ RL+LL+ ++ ++
Sbjct: 64 LYDLASAFHSFYNNCRVLDEDDEERNARLALLKAVRQVL 102
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 37.9 bits (88), Expect = 0.011
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 563 ENDNLLTIVDLIK--HLNEFFSSAKGEKFLLSAKRIFQI-----LAIE--EKKNREISLE 613
END L ++DLI+ L E F+S K +K + +RI+ I LA+ K+ R + +
Sbjct: 80 ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRD 139
Query: 614 ISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICE 659
++P ++L + ++ I+DFG Q+ + K +G +L+S E
Sbjct: 140 LTPNNIMLGEDDKV--TITDFGLAKQKQPESKLTSVVGTILYSCPE 183
>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 32.5 bits (74), Expect = 0.44
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 595 RIFQILAIEEKKNREISLEISPQYLL-LEAEKRLYAVISDFGTHIQESMDHKRYHQIGDL 653
RI IL + E+ L LL E+ L + +F ++E+ + H++ +
Sbjct: 465 RICSIL--RKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANY 522
Query: 654 LHSICEPIEIFFDQVLV-NVDDREVRDNRLSLLQYIKNII 692
L+ + F++ V ++ E+R RL+L++ + ++
Sbjct: 523 LYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVL 562
>gnl|CDD|36245 KOG1027, KOG1027, KOG1027, Serine/threonine protein kinase and
endoribonuclease ERN1/IRE1, sensor of the unfolded
protein response pathway [Signal transduction
mechanisms].
Length = 903
Score = 31.5 bits (71), Expect = 0.76
Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 38/232 (16%)
Query: 452 CDAIEEHLKPRGPLENVPTNKISITVSLAD-----KLD------------TLINFWAINE 494
+ LKP+ L +VP+ ++ ++D KL + + W E
Sbjct: 625 LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPE 684
Query: 495 KPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE-DQNLILFFHDRLKLYLHDRDIRH 553
+ + A+ +LG + + P +E N++ + + L
Sbjct: 685 QLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDCEAK 744
Query: 554 DLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAK-RIFQILAIEEKKNREISL 612
DLI +L P+ + D++ H F+ S K FL R+ EK+NR+
Sbjct: 745 DLISRMLNPDPQLRPSATDVLNH-PLFWDSEKRLSFLRDVSDRV-------EKENRD--- 793
Query: 613 EISPQYLLLEAEKRLYAVISDFGTHIQES-MDH----KRYHQ--IGDLLHSI 657
S LEA R+ V D+ + ++ MD+ + Y + DLL +I
Sbjct: 794 SPSELLRALEAGARV-VVSGDWTEKLDKTFMDNLRKYRSYKGSSVRDLLRAI 844
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA
synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the
transfer of arginine to the 3'-end of its tRNA.
Length = 156
Score = 30.3 bits (69), Expect = 2.1
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 602 IEEKKNREISLEISPQYLLLE--AEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICE 659
I K I E LL E+ L +++ F ++ + + H I L +
Sbjct: 49 ILRKAGETIEAEADADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAH 108
Query: 660 PIEIFFDQVLVNVDDREVRDNRLSL 684
F++ V + E+R+ RL+L
Sbjct: 109 AFSKFYNACPVLGAEEELRNARLAL 133
>gnl|CDD|36177 KOG0959, KOG0959, KOG0959, N-arginine dibasic convertase NRD1 and
related Zn2+-dependent endopeptidases, insulinase
superfamily [Posttranslational modification, protein
turnover, chaperones].
Length = 974
Score = 30.0 bits (67), Expect = 2.1
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 607 NREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF- 665
+R P + E+ + AV S+ ++ D R+ Q+ L + P F
Sbjct: 127 DRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNS--DGWRFDQLLRSLSNPGHPYSKFST 184
Query: 666 ---DQVLVNVDDREVRDNRLSLLQYIKN 690
+L + ++RD LL++ KN
Sbjct: 185 GNKKTLLEGPREIDLRD---ELLKFYKN 209
>gnl|CDD|36507 KOG1293, KOG1293, KOG1293, Proteins containing
armadillo/beta-catenin-like repeat [General function
prediction only].
Length = 678
Score = 29.9 bits (67), Expect = 2.6
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 16/143 (11%)
Query: 499 SKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEA 558
D + TL +R I E + +++I+ F LY + L +
Sbjct: 106 ESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSL---LYSIELKYISRLDVS 162
Query: 559 IL-----RPENDNLLT---IVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL-----AIEEK 605
++ +L I++ I L + SS LL R +IL
Sbjct: 163 RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFL 222
Query: 606 KNREISLEISPQYLLLEAEKRLY 628
++ + ++ K
Sbjct: 223 LGLLKDKGVNIRCVVTRLLKDPD 245
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 29.2 bits (65), Expect = 3.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 612 LEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIF 664
+E+ ++L E++KR+ A +E+M H + +G +HS+ E I IF
Sbjct: 263 IELLTKFLQYESKKRISA---------EEAMKHAYFRSLGTRIHSLPESISIF 306
>gnl|CDD|37037 KOG1826, KOG1826, KOG1826, Ras GTPase activating protein
RasGAP/neurofibromin [Defense mechanisms].
Length = 2724
Score = 29.2 bits (65), Expect = 4.0
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 278 LIRLTIKTNQKCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLED 332
L +L I++N + +C ++SN S + +G ++ + L+
Sbjct: 16 LPQLPIESNLSTYSEVESYSSFISCRSVISNYTFSLDINGLTEGTLELIESLLQG 70
>gnl|CDD|146681 pfam04169, DUF404, Domain of unknown function (DUF404).
Length = 253
Score = 29.0 bits (66), Expect = 5.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 199 PIKVQSLDHYIRDLEEAMVLLDPECRRNA--------ILNDA---HR-LASAVGLELVED 246
++V+ L Y + L + + L P R + N A H LA +G+ELVE
Sbjct: 165 GLRVRPLAGYPQALRDTLRALAPRGRDDPRVVLLTPGPYNSAYFEHAFLARYMGVELVEG 224
Query: 247 KDL 249
+DL
Sbjct: 225 RDL 227
>gnl|CDD|38644 KOG3434, KOG3434, KOG3434, 60S ribosomal protein L22 [Translation,
ribosomal structure and biogenesis].
Length = 125
Score = 28.7 bits (64), Expect = 5.5
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 338 KRDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQG 387
K + L + K+ L+F +D + P++ + + L+ +I G
Sbjct: 1 KSAKKALRKTAKKKKVHLRFTIDCTNPVEDGILDIADLEKFLQERIKVNG 50
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.5 bits (63), Expect = 5.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 387 GERVSRIRVLGKKIAQLIDADVALVDRAIVLSKAD 421
G VS+I V G K + +D ++ V+S AD
Sbjct: 244 GAEVSQILVEGGKGVGVRTSDGENIEADAVVSNAD 278
>gnl|CDD|38949 KOG3745, KOG3745, KOG3745, Exocyst subunit - Sec10p [Intracellular
trafficking, secretion, and vesicular transport].
Length = 763
Score = 28.7 bits (64), Expect = 5.7
Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 554 DLIEAILRPENDNLLTIVDLIKHLNEFFS-----------SAKGEKFLLSAKRIFQILAI 602
+E +++P + + +LI++ NEF S ++ +K L +A RI ++L I
Sbjct: 127 QQLETVIKPRS-RAVDAQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLI 185
Query: 603 EEK----KNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSIC 658
+ K E I +Y +LE + + Q + K+ + +L
Sbjct: 186 SNELPYGKFSETKARIEKKYEVLEQN------LLEEFNSAQREENIKKMAEFAKILSEFK 239
Query: 659 EPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINV 698
+ ++ + V +D E + + + +++I ++ +
Sbjct: 240 GVVRMYLNCVDDFIDSDEFQPEQPFISNILQDIFNDILKL 279
>gnl|CDD|113608 pfam04842, DUF639, Plant protein of unknown function (DUF639).
Plant protein of unknown function.
Length = 682
Score = 28.3 bits (63), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 410 LVDRAIVLSKADLCTEIVREFPELQGKIGKEY 441
L D+A+ S +V EFPEL+G+ ++Y
Sbjct: 279 LFDKAVSYSSIPGLEPVVLEFPELKGETRRDY 310
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 28.3 bits (63), Expect = 7.7
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 403 LIDADVALVDRAIVLSKADLCTEIVREFPELQ---GKIGKEYAVLQNENISCCDAIEEHL 459
L+ A+ ++ IVL+K DL + EL IG + +N + + E L
Sbjct: 103 LVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELL 162
Query: 460 KPR 462
+
Sbjct: 163 AGK 165
>gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions..
Length = 361
Score = 27.9 bits (62), Expect = 9.1
Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 305 LVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLS-----SLKESALKFNL 359
LV N DG AA++ N R + LP+ L E L F L
Sbjct: 190 LVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVL 249
Query: 360 DLSKPL 365
P
Sbjct: 250 SRDVPR 255
>gnl|CDD|31307 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.0 bits (62), Expect = 9.6
Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 31/243 (12%)
Query: 410 LVDRAIVLSKADLCTEIVREFPE-----LQGKIGKEYA-----VLQNENISCCDAIEEHL 459
+VD + + E+V++ + + G+E A L++ I+ A H
Sbjct: 314 IVDIYVESESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGIN---AELIHA 370
Query: 460 KPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRAT-LGIIRIILE 518
+ LE+ ++ + V +A L+ G P+ +R A G+ +
Sbjct: 371 EKEEALEDFEEGEVDVLVGVASYYGVLVR---------GLDLPHRIRYAVFYGVPKFRFR 421
Query: 519 NKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLN 578
++ + +L + + L I R +LL ++ L K +
Sbjct: 422 LTLEESD---PKRLLYLLSALSDREARSRLEGLAGRLRRIIRRLSPYSLLKLMKLKKRPD 478
Query: 579 EFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHI 638
E+ A+ + ++L EE+ + + S +L+ E LY + D T+I
Sbjct: 479 --VDRHLAEEVRTLAEFVRELLKDEERVKK---IAESADLVLVYEEGELYLEVPDVRTYI 533
Query: 639 QES 641
Q S
Sbjct: 534 QAS 536
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.140 0.406
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,649,941
Number of extensions: 485930
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 33
Length of query: 702
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 601
Effective length of database: 4,081,228
Effective search space: 2452818028
Effective search space used: 2452818028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)