RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (702 letters) >gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]. Length = 691 Score = 639 bits (1650), Expect = 0.0 Identities = 271/725 (37%), Positives = 399/725 (55%), Gaps = 60/725 (8%) Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60 M D LLEI +EE+PA+ AAE L+ LKE G+ ++ + + TP RL L +KGL+ Sbjct: 3 MKDLLLEIGTEELPAKALRSAAEQLAKKFTAGLKEAGLSFEGVEVFATPRRLALLVKGLA 62 Query: 61 PHSPEKIEERLGPRV-------GAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVL 113 P++ EE+ GP V G KA +GF R G+ ++ D + +KD KKG+ Y+ + Sbjct: 63 EAQPDREEEKKGPPVKAAFDADGKPTKAAEGFARGQGV-SVEDLERRKDDKKGEEYVYRV 121 Query: 114 RKPK-RLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAK 172 +K + + E++L IVP AI +P+PKSMRW + +IRP+ I+ +L Sbjct: 122 KKEEGQPTEELLPEIVPEAIASLPFPKSMRWGS-----KDVRFIRPIHWIVALL-----G 171 Query: 173 EKIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDA 232 +++I ++ I G IT GHRF P I + S D Y+ L E V+ DPE R+ IL Sbjct: 172 DEVIPFEILGIKSGRITRGHRFLGPGEITIDSADDYVEKLREGKVIADPEERKAIILEQI 231 Query: 233 HRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVT 292 LAS +G D+DLLEE+ LVE+ V +G F++K+L LPEE++ T+K +QK F Sbjct: 232 EELASKLGGVADIDEDLLEEVTALVEYPTVLLGKFEEKFLELPEEVLITTMKEHQKYFPV 291 Query: 293 RTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKE 352 + G L FI VSN + D I++GN +V+ ARL DA F+K D Sbjct: 292 FDQGGKLLPHFIFVSNGEPKDP-ENIIEGNEKVLRARLSDAEFFFKED------------ 338 Query: 353 SALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVD 412 L KPL+ R+ +L V FH K+GT ++V RI+ + IA + ADV D Sbjct: 339 --------LKKPLESRLPKLK--TVTFHEKLGTLADKVERIKKIAAYIAPQLGADVEDAD 388 Query: 413 RAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNK 472 RA +L+KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P+ Sbjct: 389 RAALLAKADLVTEMVGEFPELQGIMGEYYALHDGEDEEVALAIEEHYLPRFAGDELPSTP 448 Query: 473 ISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE-- 530 + V+LADKLDTL+ F+ I P+GSKDPYALRRA LGI+RIILE +D+ L + ++ Sbjct: 449 VGAVVALADKLDTLVGFFGIGLIPTGSKDPYALRRAALGILRIILEKNLDLDLEELLDKA 508 Query: 531 -------------DQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHL 577 + L+ FF RL+ YL D R D+I+A+L +LL I+ + L Sbjct: 509 VASFKSKLTNAKVLEELLDFFLGRLRTYLQDEGYRKDIIDAVLALNPTDLLDIIARAEAL 568 Query: 578 NEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTH 637 EF + + + KR+ ILA K +++S + P +AEK L+ + Sbjct: 569 QEFLDLPEAKALAAANKRVSNILA---KAEKKLSGTVDPSLFEEDAEKALFEALQALKPK 625 Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 + E++ K Y L + PI+ FFD V+V +D +R+NRL+LL ++ + L V + Sbjct: 626 VAEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVAD 685 Query: 698 VQKIV 702 +V Sbjct: 686 FSLLV 690 >gnl|CDD|145318 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit. Length = 549 Score = 592 bits (1529), Expect = e-169 Identities = 211/581 (36%), Positives = 330/581 (56%), Gaps = 59/581 (10%) Query: 4 FLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHS 63 LLEI +EE+PA+ KA E L+ ++ LKE + + ++ + TP RL + ++GL+ Sbjct: 1 LLLEIGTEELPAKFLKKALEQLAELITKGLKEARLSFGEVKVFATPRRLAVLVEGLAEKQ 60 Query: 64 PEKIEERLGPRVGAGK-------KAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKP 116 P+K EE+ GP V KA +GF RS G+ ++ D +I++ KG+ A + Sbjct: 61 PDKEEEKKGPPVKIAFDADGNPTKAAEGFARSQGV-SVDDLEIRET-GKGEYLFAKKEEK 118 Query: 117 KRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKII 176 R ++L I+P AI+ +P+PKSMRW ++RP++ ++ +L ++++ Sbjct: 119 GRPTAELLPEILPEAIKSLPFPKSMRWGD-----GDLRFVRPIRWLVALL-----GDEVV 168 Query: 177 DLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLA 236 ++ I GN T GHRF P PI + S D Y L +A V++D E R+ I LA Sbjct: 169 PFEILGITSGNTTRGHRFLGPGPITIASADDYEETLRKAGVIVDFEERKELIREQIEALA 228 Query: 237 SAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTRE 296 + +G ++ D+DLLEE+ GLVEW +GSFD+++L LP E++ ++K +Q+ F ++ Sbjct: 229 AELGGKVDIDEDLLEEVTGLVEWPVALLGSFDEEFLELPPEVLITSMKEHQRYFPVYDKD 288 Query: 297 GVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALK 356 G L FI VSN ++ D +++GN RV+ ARL DA F++ D Sbjct: 289 GKLLPYFITVSNGESKDP-ENVIKGNERVLRARLADAEFFYEEDLK-------------- 333 Query: 357 FNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLID-ADVALVDRAI 415 PL+ R+ +L VVF K+G+ ++V RI L KIA+ + AD +RA Sbjct: 334 ------TPLESRVEKLK--KVVFQEKLGSLYDKVERIEALAGKIAEQLGEADAEDAERAA 385 Query: 416 VLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISI 475 +L KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P++ + Sbjct: 386 LLCKADLVTEMVGEFPELQGIMGRYYALHDGEDEEVALAIEEHYLPRFAGDALPSSPVGA 445 Query: 476 TVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED---- 531 V+LADKLDTL+ + I E P+GSKDP+ALRRA LGI+RI++E + + L + +E Sbjct: 446 AVALADKLDTLVGIFGIGEIPTGSKDPFALRRAALGILRILIEKGLPLDLRELLEKAASL 505 Query: 532 ------------QNLILFFHDRLKLYLHDRDIRHDLIEAIL 560 ++L+ FF DRL+ L ++ IR+D+I+A+L Sbjct: 506 YGDKLLDAEDVVEDLLEFFLDRLRSLLEEQGIRYDVIDAVL 546 >gnl|CDD|147737 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids. Length = 117 Score = 56.1 bits (136), Expect = 3e-08 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 594 KRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDL 653 RI IL + I+L+I LL E EK L + F ++E+ + H++ + Sbjct: 6 ARICSILRKAGELG--INLDIDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANY 63 Query: 654 LHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692 L+ + F++ V +D E R+ RL+LL+ ++ ++ Sbjct: 64 LYDLASAFHSFYNNCRVLDEDDEERNARLALLKAVRQVL 102 >gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269 Score = 37.9 bits (88), Expect = 0.011 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 11/106 (10%) Query: 563 ENDNLLTIVDLIK--HLNEFFSSAKGEKFLLSAKRIFQI-----LAIE--EKKNREISLE 613 END L ++DLI+ L E F+S K +K + +RI+ I LA+ K+ R + + Sbjct: 80 ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRD 139 Query: 614 ISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICE 659 ++P ++L + ++ I+DFG Q+ + K +G +L+S E Sbjct: 140 LTPNNIMLGEDDKV--TITDFGLAKQKQPESKLTSVVGTILYSCPE 183 >gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 577 Score = 32.5 bits (74), Expect = 0.44 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 595 RIFQILAIEEKKNREISLEISPQYLL-LEAEKRLYAVISDFGTHIQESMDHKRYHQIGDL 653 RI IL + E+ L LL E+ L + +F ++E+ + H++ + Sbjct: 465 RICSIL--RKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANY 522 Query: 654 LHSICEPIEIFFDQVLV-NVDDREVRDNRLSLLQYIKNII 692 L+ + F++ V ++ E+R RL+L++ + ++ Sbjct: 523 LYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVL 562 >gnl|CDD|36245 KOG1027, KOG1027, KOG1027, Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]. Length = 903 Score = 31.5 bits (71), Expect = 0.76 Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 38/232 (16%) Query: 452 CDAIEEHLKPRGPLENVPTNKISITVSLAD-----KLD------------TLINFWAINE 494 + LKP+ L +VP+ ++ ++D KL + + W E Sbjct: 625 LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPE 684 Query: 495 KPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE-DQNLILFFHDRLKLYLHDRDIRH 553 + + A+ +LG + + P +E N++ + + L Sbjct: 685 QLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDCEAK 744 Query: 554 DLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAK-RIFQILAIEEKKNREISL 612 DLI +L P+ + D++ H F+ S K FL R+ EK+NR+ Sbjct: 745 DLISRMLNPDPQLRPSATDVLNH-PLFWDSEKRLSFLRDVSDRV-------EKENRD--- 793 Query: 613 EISPQYLLLEAEKRLYAVISDFGTHIQES-MDH----KRYHQ--IGDLLHSI 657 S LEA R+ V D+ + ++ MD+ + Y + DLL +I Sbjct: 794 SPSELLRALEAGARV-VVSGDWTEKLDKTFMDNLRKYRSYKGSSVRDLLRAI 844 >gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. Length = 156 Score = 30.3 bits (69), Expect = 2.1 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 602 IEEKKNREISLEISPQYLLLE--AEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICE 659 I K I E LL E+ L +++ F ++ + + H I L + Sbjct: 49 ILRKAGETIEAEADADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAH 108 Query: 660 PIEIFFDQVLVNVDDREVRDNRLSL 684 F++ V + E+R+ RL+L Sbjct: 109 AFSKFYNACPVLGAEEELRNARLAL 133 >gnl|CDD|36177 KOG0959, KOG0959, KOG0959, N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 974 Score = 30.0 bits (67), Expect = 2.1 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%) Query: 607 NREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF- 665 +R P + E+ + AV S+ ++ D R+ Q+ L + P F Sbjct: 127 DRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNS--DGWRFDQLLRSLSNPGHPYSKFST 184 Query: 666 ---DQVLVNVDDREVRDNRLSLLQYIKN 690 +L + ++RD LL++ KN Sbjct: 185 GNKKTLLEGPREIDLRD---ELLKFYKN 209 >gnl|CDD|36507 KOG1293, KOG1293, KOG1293, Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]. Length = 678 Score = 29.9 bits (67), Expect = 2.6 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 16/143 (11%) Query: 499 SKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEA 558 D + TL +R I E + +++I+ F LY + L + Sbjct: 106 ESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSL---LYSIELKYISRLDVS 162 Query: 559 IL-----RPENDNLLT---IVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL-----AIEEK 605 ++ +L I++ I L + SS LL R +IL Sbjct: 163 RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFL 222 Query: 606 KNREISLEISPQYLLLEAEKRLY 628 ++ + ++ K Sbjct: 223 LGLLKDKGVNIRCVVTRLLKDPD 245 >gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309 Score = 29.2 bits (65), Expect = 3.9 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 612 LEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIF 664 +E+ ++L E++KR+ A +E+M H + +G +HS+ E I IF Sbjct: 263 IELLTKFLQYESKKRISA---------EEAMKHAYFRSLGTRIHSLPESISIF 306 >gnl|CDD|37037 KOG1826, KOG1826, KOG1826, Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]. Length = 2724 Score = 29.2 bits (65), Expect = 4.0 Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 278 LIRLTIKTNQKCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLED 332 L +L I++N + +C ++SN S + +G ++ + L+ Sbjct: 16 LPQLPIESNLSTYSEVESYSSFISCRSVISNYTFSLDINGLTEGTLELIESLLQG 70 >gnl|CDD|146681 pfam04169, DUF404, Domain of unknown function (DUF404). Length = 253 Score = 29.0 bits (66), Expect = 5.1 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%) Query: 199 PIKVQSLDHYIRDLEEAMVLLDPECRRNA--------ILNDA---HR-LASAVGLELVED 246 ++V+ L Y + L + + L P R + N A H LA +G+ELVE Sbjct: 165 GLRVRPLAGYPQALRDTLRALAPRGRDDPRVVLLTPGPYNSAYFEHAFLARYMGVELVEG 224 Query: 247 KDL 249 +DL Sbjct: 225 RDL 227 >gnl|CDD|38644 KOG3434, KOG3434, KOG3434, 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]. Length = 125 Score = 28.7 bits (64), Expect = 5.5 Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 338 KRDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQG 387 K + L + K+ L+F +D + P++ + + L+ +I G Sbjct: 1 KSAKKALRKTAKKKKVHLRFTIDCTNPVEDGILDIADLEKFLQERIKVNG 50 >gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 487 Score = 28.5 bits (63), Expect = 5.7 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 387 GERVSRIRVLGKKIAQLIDADVALVDRAIVLSKAD 421 G VS+I V G K + +D ++ V+S AD Sbjct: 244 GAEVSQILVEGGKGVGVRTSDGENIEADAVVSNAD 278 >gnl|CDD|38949 KOG3745, KOG3745, KOG3745, Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]. Length = 763 Score = 28.7 bits (64), Expect = 5.7 Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 22/160 (13%) Query: 554 DLIEAILRPENDNLLTIVDLIKHLNEFFS-----------SAKGEKFLLSAKRIFQILAI 602 +E +++P + + +LI++ NEF S ++ +K L +A RI ++L I Sbjct: 127 QQLETVIKPRS-RAVDAQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLI 185 Query: 603 EEK----KNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSIC 658 + K E I +Y +LE + + Q + K+ + +L Sbjct: 186 SNELPYGKFSETKARIEKKYEVLEQN------LLEEFNSAQREENIKKMAEFAKILSEFK 239 Query: 659 EPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINV 698 + ++ + V +D E + + + +++I ++ + Sbjct: 240 GVVRMYLNCVDDFIDSDEFQPEQPFISNILQDIFNDILKL 279 >gnl|CDD|113608 pfam04842, DUF639, Plant protein of unknown function (DUF639). Plant protein of unknown function. Length = 682 Score = 28.3 bits (63), Expect = 6.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 410 LVDRAIVLSKADLCTEIVREFPELQGKIGKEY 441 L D+A+ S +V EFPEL+G+ ++Y Sbjct: 279 LFDKAVSYSSIPGLEPVVLEFPELKGETRRDY 310 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 28.3 bits (63), Expect = 7.7 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 403 LIDADVALVDRAIVLSKADLCTEIVREFPELQ---GKIGKEYAVLQNENISCCDAIEEHL 459 L+ A+ ++ IVL+K DL + EL IG + +N + + E L Sbjct: 103 LVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELL 162 Query: 460 KPR 462 + Sbjct: 163 AGK 165 >gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.. Length = 361 Score = 27.9 bits (62), Expect = 9.1 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 5/66 (7%) Query: 305 LVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLS-----SLKESALKFNL 359 LV N DG AA++ N R + LP+ L E L F L Sbjct: 190 LVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVL 249 Query: 360 DLSKPL 365 P Sbjct: 250 SRDVPR 255 >gnl|CDD|31307 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair]. Length = 1187 Score = 28.0 bits (62), Expect = 9.6 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 31/243 (12%) Query: 410 LVDRAIVLSKADLCTEIVREFPE-----LQGKIGKEYA-----VLQNENISCCDAIEEHL 459 +VD + + E+V++ + + G+E A L++ I+ A H Sbjct: 314 IVDIYVESESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGIN---AELIHA 370 Query: 460 KPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRAT-LGIIRIILE 518 + LE+ ++ + V +A L+ G P+ +R A G+ + Sbjct: 371 EKEEALEDFEEGEVDVLVGVASYYGVLVR---------GLDLPHRIRYAVFYGVPKFRFR 421 Query: 519 NKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLN 578 ++ + +L + + L I R +LL ++ L K + Sbjct: 422 LTLEESD---PKRLLYLLSALSDREARSRLEGLAGRLRRIIRRLSPYSLLKLMKLKKRPD 478 Query: 579 EFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHI 638 E+ A+ + ++L EE+ + + S +L+ E LY + D T+I Sbjct: 479 --VDRHLAEEVRTLAEFVRELLKDEERVKK---IAESADLVLVYEEGELYLEVPDVRTYI 533 Query: 639 QES 641 Q S Sbjct: 534 QAS 536 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.140 0.406 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 8,649,941 Number of extensions: 485930 Number of successful extensions: 1198 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1179 Number of HSP's successfully gapped: 33 Length of query: 702 Length of database: 6,263,737 Length adjustment: 101 Effective length of query: 601 Effective length of database: 4,081,228 Effective search space: 2452818028 Effective search space used: 2452818028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (27.2 bits)