RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(702 letters)
>gnl|CDD|179258 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.
Length = 682
Score = 742 bits (1918), Expect = 0.0
Identities = 270/719 (37%), Positives = 405/719 (56%), Gaps = 55/719 (7%)
Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60
M D LLEI +EE+PA+ KAAE L+ + LKE G+ + +++ + TP RL + ++GL+
Sbjct: 1 MKDLLLEIGTEELPAKALRKAAEQLAERITKELKEAGLSFGSIKVFATPRRLAVLVEGLA 60
Query: 61 PHSPEKIEERLGPRV-------GAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVL 113
P++ EE+ GP V G KA +GF R G+ T+ D + ++ KKG+ A
Sbjct: 61 EKQPDREEEKKGPAVKIAFDADGNPTKAAEGFARGQGV-TVDDLERRET-KKGEYLFARK 118
Query: 114 RKPKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKE 173
R ++L I+P A+ K+P+PKSMRW ++RP+ I+ +L +
Sbjct: 119 VVKGRPTAELLPEILPEALAKLPFPKSMRWGN-----GDLRFVRPVHWIVALL-----GD 168
Query: 174 KIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAH 233
+++ ++ I G +T GHRF P PI + + D Y L EA V+ DPE R+ IL
Sbjct: 169 EVVPFEILGIKSGRVTRGHRFLGPGPITIANADDYEEKLREAKVIADPEERKAIILEQIE 228
Query: 234 RLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTR 293
LA+ +G ++ D+DLLEE+ GLVEW V +GSFD+K+L LPEE++ T+K +QK F
Sbjct: 229 ELAAELGGQVDIDEDLLEEVTGLVEWPVVLLGSFDEKFLELPEEVLITTMKEHQKYFPVY 288
Query: 294 TREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKES 353
+G L FI VSNI S I++GN +V+ ARL DA F++ D
Sbjct: 289 DADGKLLPNFITVSNI-ESKDPENIIKGNEKVLRARLADAEFFFEEDLK----------- 336
Query: 354 ALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDR 413
KPL+ R+ +L +VVFH K+GT ++V RIR L IA+ + AD AL +R
Sbjct: 337 ---------KPLEDRVEKLK--NVVFHEKLGTLYDKVERIRALAGYIAEQLGADAALAER 385
Query: 414 AIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKI 473
A +L+KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P+ +
Sbjct: 386 AALLAKADLVTEMVGEFPELQGIMGRYYALHDGEDEEVALAIEEHYLPRFAGDELPSTPV 445
Query: 474 SITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED-- 531
V+LADKLDTL+ + I E P+GSKDP+ALRRA LGI+RIILE +D+ L + IE
Sbjct: 446 GAAVALADKLDTLVGIFGIGEIPTGSKDPFALRRAALGILRIILEKGLDLDLDELIEKAV 505
Query: 532 --------QNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSS 583
+++ FF DRLK L D IR+D+I+A+L D+L + ++ L+ F
Sbjct: 506 SLYNANVLDDVLDFFLDRLKALLQDEGIRYDVIDAVLALRPDDLADLDARVEALSAFRKL 565
Query: 584 AKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMD 643
+ + + KR+ IL E K +S E+ P AEK LYA + + ++ ++
Sbjct: 566 PEFKALAAANKRVSNILKKAEGK---VSGEVDPALFEEPAEKALYAALEELKPKVEPALA 622
Query: 644 HKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702
Y + L ++ P++ FFD V+V +D +R NRL+LL ++ + L V + K+
Sbjct: 623 AGDYQAALEALAALRPPVDAFFDNVMVMAEDEALRANRLALLASLRELFLRVADFSKLA 681
>gnl|CDD|161766 TIGR00211, glyS, glycyl-tRNA synthetase, tetrameric type, beta
subunit. The glycyl-tRNA synthetases differ even among
the eubacteria in oligomeric structure. In Escherichia
coli and most others, it is a heterodimer of two alpha
chains and two beta chains, encoded by tandem genes. The
genes are similar, but fused, in Chlamydia trachomatis.
By contrast, the glycyl-tRNA synthetases of Thermus
thermophilus and of archaea and eukaryotes differ
considerably; they are homodimeric, mutually similar,
and not detected by this model.
Length = 691
Score = 419 bits (1078), Expect = e-117
Identities = 231/725 (31%), Positives = 372/725 (51%), Gaps = 63/725 (8%)
Query: 3 DFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPH 62
FL+EI +EE+PA+ A + L L + G+ + N+ + TP RL + +K L+
Sbjct: 5 TFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAEL 64
Query: 63 SPEKIEERLGPRVGA-----GK--KAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRK 115
P++ EE+ GP V GK KA GF + G+ + D +I + K +++ + +
Sbjct: 65 QPDRKEEKKGPAVKIAFDADGKPTKAALGFAKGQGI-NVEDAEIFQTDKGEWLFVRKIHE 123
Query: 116 PKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKI 175
+ +D+L +V + K+P+PKSMRW +IRP+ I+ +L + +
Sbjct: 124 -GQPTKDLLPPLVLEFLAKLPFPKSMRWGN-----VDVRFIRPIHWIVVLL-----GDDV 172
Query: 176 IDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRL 235
I +++ + T GHRF + ++S D Y L+E V+ DP+ R+ IL L
Sbjct: 173 IPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENHVIADPKERKAMILQQIETL 232
Query: 236 ASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTR 295
A+ +G D+DLL+E++ LVE+ +G F++++L LP E++ T+K +Q+ F +
Sbjct: 233 AAKLGGIADIDEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDK 292
Query: 296 EGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESAL 355
+G L FI VSN + D I+ GN +V+ ARL DA F
Sbjct: 293 DGKLLPHFITVSNGNSKDP-QKIILGNEKVLRARLSDAEFF------------------- 332
Query: 356 KFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVA---LVD 412
+ DL KPLD + RL+ VVF ++GT ++V RI ++ IAQ + AD V
Sbjct: 333 -YKTDLKKPLDDNLPRLE--TVVFQQELGTLKDKVDRISIIAGYIAQQLGADENMLEHVK 389
Query: 413 RAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNK 472
RA +LSKADL T +V EFPELQG +G++YA E+ + A+ E PR +++P++
Sbjct: 390 RAALLSKADLVTNMVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSL 449
Query: 473 ISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED- 531
+ V++ADKLDTL + + I + P+GSKDP+ALRRA LG++RII+E ++I L + + +
Sbjct: 450 VGSVVAMADKLDTLASIFGIGQIPTGSKDPFALRRAALGVLRIIVEKNLEIDLEELLTNF 509
Query: 532 --------------QNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHL 577
++L FF R + L D I D+I+A+L + + L
Sbjct: 510 VLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDPADFDARAQAL 569
Query: 578 NEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTH 637
+ F K E + KR+ IL K N +S EI EK L+ + +
Sbjct: 570 SHFRDLPKAEALAAANKRVANILK---KGNPVLSSEIQANLFKEPKEKALFEAVLAIKMN 626
Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697
QES + Y + L + P++ FFD V+V DD E+R NRL+ L ++ + L V +
Sbjct: 627 AQESFESGDYETALEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVAD 686
Query: 698 VQKIV 702
+ +
Sbjct: 687 ISALQ 691
>gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 379 bits (975), Expect = e-105
Identities = 209/723 (28%), Positives = 336/723 (46%), Gaps = 79/723 (10%)
Query: 2 PDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSP 61
L EI SEE+PA + L L LL + + Y+ + TP RL L ++ ++P
Sbjct: 312 ETLLFEIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEVLGTPRRLALLVEDVAP 371
Query: 62 HSPEKIEERLGPRV-------GAGKKAIDGFLRSTG-----LQTIS-DCQIKKDPKKGDV 108
P+ E+ GPR+ G A +GF RS G L + D I+ G
Sbjct: 372 REPDAEREKRGPRLSAAFDADGTPTPAGEGFFRSQGVDISHLSALDQDGAIEIREINGVE 431
Query: 109 YLAVLRK-PKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILV 167
YL ++R P R +L +P IQ + +PK MRW S+ RP++ ++ +
Sbjct: 432 YLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDD-----PGLSYARPIRWLVALY- 485
Query: 168 AEDAKEKIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNA 227
++I+ + + + G T GHR P P+++ S D Y+ L +A V+L P+ RR
Sbjct: 486 ----GDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQACVILSPKERREI 541
Query: 228 ILNDAHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQ 287
I+ LA+ V ++ + + L++E+ LVE V +G FD+K+L LP+EL+ + +Q
Sbjct: 542 IVQGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQ 601
Query: 288 KCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNL 347
+ F R +G L N F++V++ D IV+GN +V+ ARL D +K D
Sbjct: 602 RYFPVRDAQGTLLNHFVIVADGSPDD---EIVRGNEKVLRARLTDGAFLFKAD------- 651
Query: 348 SSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLID-A 406
L PL+ + +L V + +G+ ++V RI+ +++A L+ +
Sbjct: 652 -------------LKTPLETFVEKLK--SVTYFEALGSLADKVERIKAHAEELAALLPLS 696
Query: 407 DVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLE 466
+DRA L K DL +++V EFPELQG +G+ YA E + A+ EH PR +
Sbjct: 697 ARETLDRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGD 756
Query: 467 NVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPL- 525
++P + +SLAD+LD L+ +A+ KP+ S DPYALRR LG++ ++ + L
Sbjct: 757 SLPASTTGALLSLADRLDNLLGCFALGLKPTSSSDPYALRRQALGVLTLLRATPASLDLE 816
Query: 526 -----------SQFIEDQNLIL-----FFHDRLKLYLHDRDIRHDLIEAILRPENDNLLT 569
S + + +L F RLK L D D I A+L N
Sbjct: 817 DLLARLARHFPSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKNPAE 876
Query: 570 IVDLIKHLNEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYA 629
+ L E S+ + + R+ +ILA + SL + P AE L
Sbjct: 877 ADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTDASLLLEP------AELNLKQ 930
Query: 630 VISDFGTHIQESMDHKR--YHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQY 687
+ F + E + +L + + FFD+VLV DD +R+ RL LL
Sbjct: 931 ALDAFREELTELPIDLKDYVAAAAELP----QAVNTFFDEVLVMADDEAIRNARLGLLAA 986
Query: 688 IKN 690
I++
Sbjct: 987 IRD 989
>gnl|CDD|129069 smart00836, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain of
Arginyl tRNA synthetase. This domain is known as the
DALR domain after characteristic conserved amino acids
PUBMED:10447505.
Length = 122
Score = 37.2 bits (87), Expect = 0.015
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 595 RIFQILAIEEKKNREISLEISPQ----YLLL--EAEKRLYAVISDFGTHIQESMDHKRYH 648
RI IL +K E L + LL E L +++ F ++ + + H
Sbjct: 7 RICSIL----RKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPH 62
Query: 649 QIGDLLHSICEPIEIFFDQVLV-NVDDREVRDNRLSLLQYIKNII 692
++ + L+ + F+++ V ++ E+R RL+LL+ ++ ++
Sbjct: 63 RLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVL 107
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 35.9 bits (84), Expect = 0.039
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 595 RIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLL 654
RI IL +K E +++ L E EK L +++F ++ + + H+I + L
Sbjct: 399 RICSIL----RKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYL 454
Query: 655 HSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692
+ + F+++VL+ ++ E+R+ RL+L++ ++
Sbjct: 455 YELAGAFHSFYNRVLLKDEEEELRNARLALVKATAQVL 492
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 31.4 bits (72), Expect = 0.81
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 72 GPR-----VGAGKKA---IDGFLRSTGLQTISDCQIKKDPK 104
GPR +G GKKA ID FL + +I K K
Sbjct: 421 GPRTVTTAIGHGKKAARNIDAFLGGEPYEHRPKREIVKFDK 461
>gnl|CDD|114800 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa
myosin-cross-reactive antigen like family. Members of
this family are thought to have structural features in
common with the beta chain of the class II antigens, as
well as myosin, and may play an important role in the
pathogenesis.
Length = 500
Score = 30.1 bits (68), Expect = 1.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 344 LPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQL 403
LP+ S+LK + L P+ + L V F GT+ E + KK A+
Sbjct: 192 LPDFSALKFTKYNQYESLVLPM---IKYLKSHGVDFE--YGTKVENIEVDISDSKKAAKK 246
Query: 404 IDADVALVDRAIVLSKADL 422
I + +I L++ DL
Sbjct: 247 IAMTRNGKEESIELTEDDL 265
>gnl|CDD|162955 TIGR02630, xylose_isom_A, xylose isomerase. Members of this family
are the enzyme xylose isomerase (5.3.1.5), which
interconverts D-xylose and D-xylulose.
Length = 434
Score = 29.6 bits (67), Expect = 2.6
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 547 HDRDIRHDLIEAILRPENDNLLTIVDLIK 575
HDRDI + A LR N NL IVDLIK
Sbjct: 98 HDRDIAPE--GASLRETNANLDEIVDLIK 124
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 29.3 bits (65), Expect = 3.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 94 ISDCQIKKDPKKGDVYLAVLRKPKRLIEDVLKTIVPVAIQKVPW 137
+SDCQI P+ GD L RL+ D LK V VA ++ W
Sbjct: 353 LSDCQIVLVPQLGDQVLNT-----RLLSDELKVSVEVAREETGW 391
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.0 bits (65), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 567 LLTIVDL-IKHLNEFFSSAKGEKFLLSAKRIFQILAIEEKKNREIS 611
+ D +K NEFFS + KF+ A + IE+K+ RE+
Sbjct: 417 IAKAADARVKATNEFFSGIRIAKFM--AWEPCFVANIEDKRARELR 460
>gnl|CDD|180531 PRK06330, PRK06330, transcript cleavage factor/unknown domain
fusion protein; Validated.
Length = 718
Score = 28.9 bits (65), Expect = 4.1
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 35/136 (25%)
Query: 482 KLDTLINFWAINEKPSGSKDPYALRRATLGIIRII---LENKIDIP-----LSQFIEDQN 533
K DT I E P KDPY LR L + L D+ + F+ D
Sbjct: 258 KKDTRI------ETPDSLKDPYVLRPKGLSHESQLERSLSGSTDVDKKIQTIYTFVRD-- 309
Query: 534 LILFFHDRLKLYLHDRDIRHDLIEAI----LRPENDNLLTIVDLIKHLNEFF---SSAKG 586
H LK + + R LI+ + L N LL L+ L+EF SS
Sbjct: 310 ----LHSELK----NEENRKSLIKKLQDLDLEELNSALLLQRALL--LSEFLGEKSSELD 359
Query: 587 EKFL--LSAKRIFQIL 600
+ + LS +I I+
Sbjct: 360 CENIASLSEDQIEDIV 375
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 28.8 bits (65), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 212 LEEAMVLLDPECRRNAILNDAHRLASAVGLELVEDKDLLEEI 253
L+E V LDP R AI+ L GL ++ L++EI
Sbjct: 156 LDEPTVGLDPASRA-AIVAHVRALCRDQGLSVLWATHLVDEI 196
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase.
This model represents HemN, the oxygen-independent
coproporphyrinogen III oxidase that replaces HemF
function under anaerobic conditions. Several species,
including E. coli, Helicobacter pylori, and Aquifex
aeolicus, have both a member of this family and a member
of another, closely related family for which there is no
evidence of coproporphyrinogen III oxidase activity.
Members of this family have a perfectly conserved motif
PYRT[SC]YP in a region N-terminal to the region of
homology with the related uncharacterized protein.
Length = 455
Score = 28.6 bits (64), Expect = 5.7
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 36/164 (21%)
Query: 514 RIILENKIDIPLSQFIEDQNLILFFHDRL------KLYLHDRDIRHDLIEAILRPENDNL 567
+ N PLS ++ I F H + + ++A+ + E +
Sbjct: 39 AVARHNYPKTPLSLYVH----IPFCHKACYFCGCNVIITRQKHKADPYLDALEK-EIALV 93
Query: 568 LTIVDLIKHLNEFFSSAKGEKFL--LSAKRIFQIL--AIEEKKNREISLEISPQYLLLEA 623
+ D +H+++ +L R+ +++ + EIS+EI P+Y+ +
Sbjct: 94 APLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDV 153
Query: 624 EKRLYAV--------ISDFGTHIQ-------------ESMDHKR 646
L + DF +Q E M+H R
Sbjct: 154 IDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAR 197
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 28.5 bits (64), Expect = 6.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 170 DAKEKIIDLDLKE----IPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMV 217
DA EKI+D L++ CGN R P + + +D + L+EA+
Sbjct: 377 DAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT 428
>gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein.
Length = 217
Score = 28.0 bits (63), Expect = 7.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 221 PECRRNAILNDAHRLASAVGLELVEDKDLLEEI---IGLVE 258
P+ R +L A A G E+ +D +E++ + LVE
Sbjct: 156 PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVE 196
>gnl|CDD|181976 PRK09592, celD, cellobiose phosphotransferase system IIC component;
Reviewed.
Length = 449
Score = 28.1 bits (63), Expect = 8.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 127 IVPVAIQKVPWPKSMRWSTTHSPISAF----SWIRPLKSILCILVA 168
V I +VPWP T + AF W + +++C +VA
Sbjct: 387 FVKPIIAQVPWP-------TPVGLGAFIGTADWRAAVLALVCAIVA 425
>gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 10.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNR-LSLLQYIK 689
I E D +R + G + E +E+ F Q L + E+RD + + LL Y++
Sbjct: 133 IAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ 185
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.140 0.406
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 11,756,365
Number of extensions: 809406
Number of successful extensions: 1607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1579
Number of HSP's successfully gapped: 34
Length of query: 702
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 602
Effective length of database: 3,833,673
Effective search space: 2307871146
Effective search space used: 2307871146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)