RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (702 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 67.7 bits (165), Expect = 8e-12
 Identities = 94/581 (16%), Positives = 175/581 (30%), Gaps = 208/581 (35%)

Query: 188 ITYG---HRFHAP---HPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG- 240
           +++G   H    P     I  Q  + + + L E     +     +     A  +   +G 
Sbjct: 11  LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP---TEGFAADDEPTTPAELVGKFLGY 67

Query: 241 -LELVEDKD--LLEEIIGLVEWVQVFMGSFDKKYLC----------LPEELIRLTIKTNQ 287
              LVE       +++      + + +  F+  YL           L +E         +
Sbjct: 68  VSSLVEPSKVGQFDQV------LNLCLTEFENCYLEGNDIHALAAKLLQE---NDTTLVK 118

Query: 288 KCFVTRTREGVLANCFILVSNIQ----------ASDGGAAIV-----QGNSRVVAARLED 332
              + +     +    +                  +G A +V     QGN+      L D
Sbjct: 119 TKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175

Query: 333 ALH---------FWKRDQNNLPNLSSLKESALKF---NLDLSKPLDQRMARLDMLDVVFH 380
            L+           K     L  L      A K     L++ + L+      D  D +  
Sbjct: 176 -LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLS 233

Query: 381 AK-----IG-TQGER--VSRIRVLGKKIAQLIDADVA-------LVDRAIVLSKADLCTE 425
                  IG  Q     V+  ++LG    +L             LV  A+ +++ D  + 
Sbjct: 234 IPISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETD--SW 289

Query: 426 IVREFPELQGK-------IGKE----Y-------AVLQNENISCCDAIEEHLKPRGPLEN 467
               F     K       IG      Y       ++L+       D++E         E 
Sbjct: 290 --ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-------DSLEN-----N--EG 333

Query: 468 VPTNKISIT-VSLADKLDTLINFWAINEK-PSGSK----------------DPYALRRAT 509
           VP+  +SI+ ++  +++   +N    N   P+G +                 P +L    
Sbjct: 334 VPSPMLSISNLTQ-EQVQDYVN--KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390

Query: 510 LGIIRIILENKID---IPLSQ----FIEDQNLILF----FH--------DRLKLYLHDRD 550
           L + +    + +D   IP S+    F    N  L     FH        D +   L   +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKF---SNRFLPVASPFHSHLLVPASDLINKDLVKNN 447

Query: 551 IR---HDLIEAI----------LRPENDNLL-TIVDLIKHLN-------EF-------F- 581
           +     D+   I          LR  + ++   IVD I  L        +F       F 
Sbjct: 448 VSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505

Query: 582 ---SSAKGEKFLLSAK-------RIFQILA--IEEKKNREI 610
              +S  G   +L+ +       R+  I+A  ++   + + 
Sbjct: 506 PGGASGLG---VLTHRNKDGTGVRV--IVAGTLDINPDDDY 541



 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 73/416 (17%), Positives = 124/416 (29%), Gaps = 179/416 (43%)

Query: 82  IDGFLRSTG--LQTISDCQIKKDPK-------KG-DVYLAVLRKP-KRLIEDVLKTIVPV 130
           +   ++ +   L  +      +          +G ++ L  L  P     +D L + +P+
Sbjct: 184 VGDLIKFSAETLSELI-----RTTLDAEKVFTQGLNI-LEWLENPSNTPDKDYLLS-IPI 236

Query: 131 A------IQKVPW----------PKSMR----WSTTHSP-------IS-AFSWIRPLKSI 162
           +      IQ   +          P  +R     +T HS        I+   SW    +S 
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW----ESF 292

Query: 163 LCILVAEDAKEKIIDLDLKEIPCGNITYGHRFH--APH----PIKVQ-SLDH-------- 207
                   +  K I + L  I       G R +   P+    P  ++ SL++        
Sbjct: 293 ------FVSVRKAITV-LFFI-------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338

Query: 208 -YIRDLEEAMV--LLD------PECRRNAI-L-NDAHRL------ASAVGLELVEDKDLL 250
             I +L +  V   ++      P  ++  I L N A  L       S  GL L      L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL-----TL 393

Query: 251 EEI---IGL-----------VEWVQVF--MGS-FDKKYLCLPEELIR-------LTIKTN 286
            +     GL           +++   F  + S F    L    +LI        ++    
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453

Query: 287 Q-KCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLP 345
             +  V  T +G         S+++   G   I     R+V   +   +  W        
Sbjct: 454 DIQIPVYDTFDG---------SDLRVLSGS--IS---ERIVDCIIRLPVK-W-------- 490

Query: 346 NLSSLKESALKFN----LD-----LS--KPLDQRMARLDMLDVVFHAKIGTQGERV 390
                 E+  +F     LD      S    L  R             K GT G RV
Sbjct: 491 ------ETTTQFKATHILDFGPGGASGLGVLTHRN------------KDGT-GVRV 527



 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 53/150 (35%)

Query: 50  HRLFLYLKGLSP-HSP------EKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKD 102
           +R FL +   SP HS       + I + L         + +            D QI   
Sbjct: 418 NR-FLPVA--SPFHSHLLVPASDLINKDLVKN----NVSFNA----------KDIQI--- 457

Query: 103 PKKGDVYL----AVLRKPKRLIEDVLKTIVP-VAIQKVPWPKSMRWSTTHSPISAFSWIR 157
           P    VY     + LR        + + IV  +    V W  + ++  TH  I  F    
Sbjct: 458 P----VYDTFDGSDLRVLS---GSISERIVDCIIRLPVKWETTTQFKATH--ILDFG--- 505

Query: 158 PLK-SILCILVAEDAKE----KII---DLD 179
           P   S L +L   + K+    ++I    LD
Sbjct: 506 PGGASGLGVLTHRN-KDGTGVRVIVAGTLD 534



 Score = 36.1 bits (83), Expect = 0.029
 Identities = 56/301 (18%), Positives = 89/301 (29%), Gaps = 163/301 (54%)

Query: 2   PD--FLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYW--------TPHR 51
           PD  +LL   S  IP          +S  LIG++       Q +  Y         TP  
Sbjct: 226 PDKDYLL---S--IP----------ISCPLIGVI-------Q-LAHYVVTAKLLGFTPGE 262

Query: 52  LFLYLKGLSPHS--------------PEKIEERLGPRVGAGKKAID-----G-------- 84
           L  YLKG + HS               E           + +KAI      G        
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFV-------SVRKAITVLFFIGVRCYEAYP 315

Query: 85  --FLRSTGLQ--------------TISDCQIKK-----D------PKKGDVYLA------ 111
              L  + L+              +IS+   ++     +      P    V ++      
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375

Query: 112 --V--------------LRKPKRLIEDVLKTIVPVAI-Q-KVPWPK-SMRWSTTHSPISA 152
             V              LRK K           P  + Q ++P+ +  +++S    P+++
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAK----------APSGLDQSRIPFSERKLKFSNRFLPVAS 425

Query: 153 FSWIRPLKSILCILVAEDAKEKII-DL----------DLKEIP-------------CGNI 188
                P  S L  L    A + I  DL          D++ IP              G+I
Sbjct: 426 -----PFHSHL--L--VPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSI 475

Query: 189 T 189
           +
Sbjct: 476 S 476


>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation,
           ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC
           5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP:
           a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
          Length = 607

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 34/98 (34%)

Query: 595 RIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLL 654
           R+  +        +E  +      L   A K L  ++  +   ++ ++       +   L
Sbjct: 495 RLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYL 554

Query: 655 HSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692
             +   +   +D + V     E+   RL+L    + ++
Sbjct: 555 FKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVL 592


>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
           cytoplasm, ligase, nucleotide-binding, protein
           biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
           {Pyrococcus horikoshii} PDB: 2zuf_A
          Length = 629

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 595 RIFQILAIEEKKNREISLEISPQ----YLLLEAEKRLYAVISDFGTHIQESMDHKRYHQI 650
           R   IL   E++  ++  E   +      L E E+ L  ++S F   ++++    + H I
Sbjct: 513 RCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLI 572

Query: 651 GDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692
               + +      F+    V   +  VR+ RL L+  ++ ++
Sbjct: 573 AWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVL 614


>1ekg_A Frataxin; freidreich'S ataxia, iron transport, mitochondrial,
           disease, metal transport; 1.80A {Homo sapiens} SCOP:
           d.82.2.1 PDB: 1ly7_A
          Length = 127

 Score = 35.6 bits (82), Expect = 0.038
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 635 GTHIQESMDHKRYHQIGD-LLHSICEPIEIFFDQVLVNVD-DREVRDNRLSLLQYIKNII 692
           G+H+  S+D   Y ++ +  L S+ E  E   D+     D D       L+ ++   ++ 
Sbjct: 1   GSHM-GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLT-VKLGGDLG 58

Query: 693 LIVINVQ 699
             VIN Q
Sbjct: 59  TYVINKQ 65


>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
           initiative, RSGI, structural genomics, ligase; 2.30A
           {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
          Length = 592

 Score = 33.7 bits (76), Expect = 0.13
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 599 ILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSIC 658
             +I  K     + ++S        E+ L   + DF   + E+ + +  H +   L  + 
Sbjct: 480 AHSILRKAGEWGAPDLS---QATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLA 536

Query: 659 -------EPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692
                     E       V      +R+ RLSL+Q ++  +
Sbjct: 537 ASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTL 577


>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
           structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
           thermophilus HB8} SCOP: d.114.1.1 d.159.1.2
          Length = 552

 Score = 33.0 bits (74), Expect = 0.22
 Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 29/199 (14%)

Query: 291 VTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNL--- 347
           V R RE  L N        +  + G  I   N   + A +        +    LP     
Sbjct: 347 VVRRRESNLGNLITDGMLWKTRNAGTQIALQNGGGIRASIPKGPITVGKVYEVLPFGNTL 406

Query: 348 -------SSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKI 400
                    +   AL+  +   +    R  ++  L   F       G RV R+ V  +K 
Sbjct: 407 VVMDLKGKEILA-ALENGVSQWENTAGRFLQVSGLRYAFDLS-RPAGSRVVRVEVKTEKG 464

Query: 401 AQLIDAD----VALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIE 456
              +D +    V + +   + +  D        F  L+   G       +   S  ++  
Sbjct: 465 YVPLDLEATYRVVVNN--FIANGGD-------GFTVLKEAQGYRV----DTGFSDAESFM 511

Query: 457 EHLKPRGPLENVPTNKISI 475
           ++LK    +E     +I +
Sbjct: 512 DYLKELKVVEAGLEGRIEV 530


>1woj_A CNP, cnpase, 2',3'-cyclic-nucleotide 3'-phosphodiesterase;
           hydrolase; 1.80A {Homo sapiens} PDB: 2ilx_A
          Length = 214

 Score = 31.0 bits (70), Expect = 1.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 323 SRVVAARL---EDALHFWKRDQNNLPNLSSL-KESALKFNLDLSKPLDQRMARLDMLDVV 378
            +   AR+   E  L  W  D + L    +L + S     L  +  ++     LD+L+++
Sbjct: 108 PKTTGARVELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEIL 167

Query: 379 FHAKIGTQGERVSRI 393
              K G++GE V  +
Sbjct: 168 RQEKGGSRGEEVGEL 182


>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding
           protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1
           PDB: 1q88_A 1q89_A
          Length = 221

 Score = 30.0 bits (67), Expect = 1.7
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 514 RIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDL 573
           R+  +    +     IE         +  K     +    ++I AI+ P+ +   +  DL
Sbjct: 45  RLTQKTDGTVMRDFLIEKAA------EYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADL 98

Query: 574 IKHLNEF 580
            K L  F
Sbjct: 99  YKFLAMF 105


>2g5f_A COG0147: anthranilate/para-aminobenzoate synthases component I;
           beta sandwhich, structural genomics, PSI; 1.80A
           {Mycobacterium tuberculosis H37RV} SCOP: d.161.1.1 PDB:
           2i6y_A
          Length = 450

 Score = 29.0 bits (64), Expect = 3.1
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 512 IIRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNL 567
              +        PL++    +  I+     ++L+      R + I+ +L      +
Sbjct: 118 RYGLQQRLAPHTPLARVFSPRTRIMVSEKEIRLFDAGIRHR-EAIDRLLATGVREV 172


>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylation, transferase; HET:
           ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
          Length = 348

 Score = 28.9 bits (64), Expect = 4.1
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 500 KDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAI 559
             P++L+ + + +   I    I+ PL +      L          +L + DI  D ++  
Sbjct: 249 VVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDI--DFLKLF 306

Query: 560 LRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQ 598
           LR      +T  D +KH  E+ +    E     +K +++
Sbjct: 307 LRKNPAERITSEDALKH--EWLADTNIEDLREFSKELYK 343


>3lls_A 3-ketoacyl-(acyl-carrier-protein) reductase; niaid, emerald
           biostructures, UW, SBRI, oxidoreductase, structural
           genomics; 2.40A {Mycobacterium tuberculosis}
          Length = 475

 Score = 28.7 bits (64), Expect = 4.6
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 315 GAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNL-DLSKPLDQRMARLD 373
           G+ ++ G  RVV          +    NNL    +     L F+   +++P     A L 
Sbjct: 67  GSLLIGGAGRVVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATGITEP-----AGLK 121

Query: 374 MLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAI 415
            L   F   +   G R  R+ V+G         +  +  RA+
Sbjct: 122 GLHEFFTPVLRNLG-RCGRVVVVGGTPEAAASTNERIAQRAL 162


>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers,
            PALM, thumb, right hand configuration, viral protein;
            2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A*
            1n35_A* 1n38_A* 1uon_A* 2cse_1
          Length = 1267

 Score = 28.4 bits (63), Expect = 5.7
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 136  PWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDLKEIPCGNITYGHRFH 195
              PK  R   T  P     W+R +   L   +   A    +D+ L++I  G  + G RF 
Sbjct: 1199 LLPKDGRHLNTDIP-PRMGWLRAILRFLGAGMVMTATGVAVDIYLEDIHGGGRSLGQRFM 1257

Query: 196  A 196
             
Sbjct: 1258 T 1258


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 7.4
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 27/57 (47%)

Query: 587 EKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMD 643
           EK         Q L    KK              L+A  +LYA  S     I+ +M+
Sbjct: 18  EK---------QAL----KK--------------LQASLKLYADDSAPALAIKATME 47



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query: 349 SLK--ESALKFNLDLSKP 364
           +LK  +++LK   D S P
Sbjct: 21  ALKKLQASLKLYADDSAP 38


>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
           HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
           1i09_A* 1j1c_A* 2jld_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A*
           1q3d_A* 1q4l_A* 1q5k_A* 3i4b_A* 1r0e_A* 1gng_A* 2o5k_A*
           2ow3_A* 3f7z_A* 1h8f_A* 3f88_A* 1uv5_A* 1o9u_A*
          Length = 420

 Score = 27.9 bits (61), Expect = 7.9
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 554 DLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKR----IFQILAIEEKKNRE 609
            L   +L       LT ++   H   FF   +     L   R    +F     E   N  
Sbjct: 315 ALCSRLLEYTPTARLTPLEACAH--SFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPP 372

Query: 610 ISLEISPQ 617
           ++  + P 
Sbjct: 373 LATILIPP 380


>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
           structural genomics, PSI, protein structure initiative;
           2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
           1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
          Length = 298

 Score = 27.6 bits (60), Expect = 9.9
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 172 KEKIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILND 231
           ++ I++   K+    N  Y         + ++S+  Y   L +++               
Sbjct: 177 RDVILER-YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVD---FTR 232

Query: 232 AHRLASAVGLELVEDKDLLE 251
                  +GL LVE K  ++
Sbjct: 233 MVDGFKRLGLSLVERKGFID 252


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,189,846
Number of extensions: 307260
Number of successful extensions: 1025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 34
Length of query: 702
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 603
Effective length of database: 3,293,074
Effective search space: 1985723622
Effective search space used: 1985723622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.2 bits)