BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (702 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 Score = 1425 bits (3688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 702/702 (100%), Positives = 702/702 (100%) Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS Sbjct: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60 Query: 61 PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI 120 PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI Sbjct: 61 PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI 120 Query: 121 EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL 180 EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL Sbjct: 121 EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL 180 Query: 181 KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG 240 KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG Sbjct: 181 KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG 240 Query: 241 LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA 300 LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA Sbjct: 241 LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA 300 Query: 301 NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD 360 NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD Sbjct: 301 NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD 360 Query: 361 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA 420 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA Sbjct: 361 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA 420 Query: 421 DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA 480 DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA Sbjct: 421 DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA 480 Query: 481 DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD 540 DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD Sbjct: 481 DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD 540 Query: 541 RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL 600 RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL Sbjct: 541 RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL 600 Query: 601 AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP 660 AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP Sbjct: 601 AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP 660 Query: 661 IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702 IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV Sbjct: 661 IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702 >gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 173 Score = 32.3 bits (72), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 16/102 (15%) Query: 547 HDRDIRHDLIEAI-LRPENDNLLTIVDLIKHLNEFFSSAKGE--KFLLSAKRIFQILAIE 603 H IR D+ EA LR +++N+L E S + E + +L+AK +ILA E Sbjct: 36 HADKIRDDIFEARRLREKSENILM------QYKEKHSKVEEETREIILAAKHRAKILAEE 89 Query: 604 EKKN-REIS------LEISPQYLLLEAEKRLYAVISDFGTHI 638 +N +IS LE Y+ LEA++ LYA I+DF I Sbjct: 90 GCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEI 131 >gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 32.3 bits (72), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 438 GKEYAVLQNENISCCDAIEEHLKPRGPLENVPT------NKISITVSLADKLDTLIN 488 G E++ LQ ++ D IE + P G N P NK++IT LA K+D IN Sbjct: 142 GNEHS-LQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQIN 197 >gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 19/83 (22%) Query: 423 CTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADK 482 C E + ++ +I E++ L+ E ISC PLE +P+ S+ + L+ Sbjct: 64 CMETKKIHRMIRAEISTEFSTLKREVISC------------PLEEIPSISQSVDLILSPL 111 Query: 483 -----LDTLINFWAINE--KPSG 498 DTL F IN KP G Sbjct: 112 NLHIINDTLEMFSKINHMLKPGG 134 >gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 25.8 bits (55), Expect = 2.6, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 491 AINEKP--SGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILF----FHDRLKL 544 A+NE P G D AL A+ ++ + + D P++ +E ++ F FH++ Sbjct: 31 ALNELPIPDGVVDFRALLAASPSTMKDVSIGQKDAPVT-MVEYASMTCFHCAEFHNKTFK 89 Query: 545 YLHDRDIRHDLIEAILR 561 YL D+ I+ + ILR Sbjct: 90 YLEDKYIKTGKLRYILR 106 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Query: 32 LLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSPEK----IEER 70 +++ +Y M++Y+ + + + GL+PH+ E IEE+ Sbjct: 188 IIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEK 230 >gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 24.3 bits (51), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 581 FSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQE 640 + +G+ ++ + + + + E ++ ++ +Y L++ + FG I+E Sbjct: 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQP-----QKFGLGIKE 221 Query: 641 SMDHK-RYHQIGDLLHSICEPIEI 663 K +YH+ G LHSI P+++ Sbjct: 222 LWKIKPQYHRRGLALHSIGWPLDM 245 >gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] Length = 750 Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 590 LLSAKRIFQIL----AIEEKKNRE--------ISLEISPQYLLLEAEKRLYAVISDFGTH 637 LL+ KRI L I+ +K RE L+ + + R +IS F Sbjct: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579 Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 I + HK+ ++ D H I + +++ Q++ + E +D ++L Y K I + N Sbjct: 580 IHGELSHKKIGKVQDNFH-IDDTCDLYKHQMIEKKE--EEKDPNIALALYFKRTIPNIRN 636 Query: 698 VQKIV 702 +I+ Sbjct: 637 HYEIL 641 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.140 0.406 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,741 Number of Sequences: 1233 Number of extensions: 19654 Number of successful extensions: 63 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 13 length of query: 702 length of database: 328,796 effective HSP length: 80 effective length of query: 622 effective length of database: 230,156 effective search space: 143157032 effective search space used: 143157032 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 42 (20.8 bits)