HHsearch alignment for GI: 254781095 and conserved domain: COG1319

>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].
Probab=95.90  E-value=0.0042  Score=39.89  Aligned_cols=149  Identities=17%  Similarity=0.214  Sum_probs=86.9

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE-ECCCE--ECCHHHHCCCC-CCCEEEECCCCCCCCCEEEHHHHHH
Q ss_conf             99996898999999998562998999847520366-04884--02202211234-4311330266512331122156777
Q gi|254781095|r   41 VMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV-RDAGI--RGVVLRLSNAG-FSNIEVRNHCEMIVGARCSGKSLAN  116 (318)
Q Consensus        41 ~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~-~D~~~--~G~vI~l~~~~-~~~i~~~~~~~i~v~AG~~~~~l~~  116 (318)
T Consensus         5 ~y~rp~Sv~eA~~ll~~~--~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~   81 (284)
T COG1319           5 EYYRPASVEEALNLLARA--P-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIAR   81 (284)
T ss_pred             EEECCCCHHHHHHHHHHC--C-CCEEEECCCHHHHHHHCCCCCCCEEEEECCCHHHHCEEEECCCEEEEEECCCHHHHHH
T ss_conf             897779999999999748--8-8589407633788764556882407982387045156860698799941252799774


Q ss_pred             HH-HHHHCCCH---HCCCCHH-----HHHHHHHCCCCCCCCCEEEEEEE-------EEEEECCCCCEEEECCCCCCCCCC
Q ss_conf             78-87520120---0038725-----66324311573215831345666-------434411232100001233443100
Q gi|254781095|r  117 SA-LRHGIGGF---HFFYGIP-----GSIGGAAYMNAGANNCETSQYVV-------EVHGIDRKGNQHVIPREQLKYQYR  180 (318)
Q Consensus       117 ~~-~~~gl~Gl---E~l~gIP-----GTVGGAi~mNAGayG~ei~d~i~-------~V~~~d~~g~~~~l~~~e~~f~YR  180 (318)
T Consensus        82 ~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~-----p~aD~~~aLlaLdA~v~~~~~~g-~r~i~~~~f~~~p~  155 (284)
T COG1319          82 HPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD-----PAADLAPALLALDAEVEIRSPGG-ERTIPIEDFFRGPG  155 (284)
T ss_pred             CHHHHHHCHHHHHHHHHHCCHHHCCEEEECCHHCCCC-----CCHHHHHHHHHCCCEEEEECCCC-CEEEEHHHHHCCCC
T ss_conf             9433421559999998735854411044233110378-----81466899997498899960786-38988799641966


Q ss_pred             CCCCCCCCCEEEEECCCC
Q ss_conf             232246762001002354
Q gi|254781095|r  181 SSEITKDLIITHVVLRGF  198 (318)
Q Consensus       181 ~S~~~~~~iIl~a~l~l~  198 (318)
T Consensus       156 ~t~l~~gelit~v~lP~~  173 (284)
T COG1319         156 ETALEPGELITAVILPPP  173 (284)
T ss_pred             CCCCCCCCEEEEEECCCC
T ss_conf             313578707999976897