HHsearch alignment for GI: 254781095 and conserved domain: COG1319
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].
Probab=95.90 E-value=0.0042 Score=39.89 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=86.9
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE-ECCCE--ECCHHHHCCCC-CCCEEEECCCCCCCCCEEEHHHHHH
Q ss_conf 99996898999999998562998999847520366-04884--02202211234-4311330266512331122156777
Q gi|254781095|r 41 VMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV-RDAGI--RGVVLRLSNAG-FSNIEVRNHCEMIVGARCSGKSLAN 116 (318)
Q Consensus 41 ~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~-~D~~~--~G~vI~l~~~~-~~~i~~~~~~~i~v~AG~~~~~l~~ 116 (318)
T Consensus 5 ~y~rp~Sv~eA~~ll~~~--~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~ 81 (284)
T COG1319 5 EYYRPASVEEALNLLARA--P-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIAR 81 (284)
T ss_pred EEECCCCHHHHHHHHHHC--C-CCEEEECCCHHHHHHHCCCCCCCEEEEECCCHHHHCEEEECCCEEEEEECCCHHHHHH
T ss_conf 897779999999999748--8-8589407633788764556882407982387045156860698799941252799774
Q ss_pred HH-HHHHCCCH---HCCCCHH-----HHHHHHHCCCCCCCCCEEEEEEE-------EEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 78-87520120---0038725-----66324311573215831345666-------434411232100001233443100
Q gi|254781095|r 117 SA-LRHGIGGF---HFFYGIP-----GSIGGAAYMNAGANNCETSQYVV-------EVHGIDRKGNQHVIPREQLKYQYR 180 (318)
Q Consensus 117 ~~-~~~gl~Gl---E~l~gIP-----GTVGGAi~mNAGayG~ei~d~i~-------~V~~~d~~g~~~~l~~~e~~f~YR 180 (318)
T Consensus 82 ~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~-----p~aD~~~aLlaLdA~v~~~~~~g-~r~i~~~~f~~~p~ 155 (284)
T COG1319 82 HPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD-----PAADLAPALLALDAEVEIRSPGG-ERTIPIEDFFRGPG 155 (284)
T ss_pred CHHHHHHCHHHHHHHHHHCCHHHCCEEEECCHHCCCC-----CCHHHHHHHHHCCCEEEEECCCC-CEEEEHHHHHCCCC
T ss_conf 9433421559999998735854411044233110378-----81466899997498899960786-38988799641966
Q ss_pred CCCCCCCCCEEEEECCCC
Q ss_conf 232246762001002354
Q gi|254781095|r 181 SSEITKDLIITHVVLRGF 198 (318)
Q Consensus 181 ~S~~~~~~iIl~a~l~l~ 198 (318)
T Consensus 156 ~t~l~~gelit~v~lP~~ 173 (284)
T COG1319 156 ETALEPGELITAVILPPP 173 (284)
T ss_pred CCCCCCCCEEEEEECCCC
T ss_conf 313578707999976897