HHsearch alignment for GI: 254781095 and conserved domain: pfam00941
>pfam00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase.
Probab=97.71 E-value=6.1e-05 Score=51.52 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=95.8
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CCC-EECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHHH
Q ss_conf 999968989999999985629989998475203660--488-4022022112-344311330266512331122156777
Q gi|254781095|r 41 VMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DAG-IRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLAN 116 (318)
Q Consensus 41 ~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~~-~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~~ 116 (318)
T Consensus 4 ~y~~P~sl~ea~~ll~~~---~~a~ilAGGTdl~~~~~~~~~~~~~lIdl~~I~eL~~I~~~~~-~l~IGA~vt~~~l~~ 79 (171)
T pfam00941 4 TYYRPASLEEALALLAKG---PDAKLVAGGTSLGPEMKLRLARPPVLIDINGIPELRGIEETGD-GLEIGAAVTLTELID 79 (171)
T ss_pred EEECCCCHHHHHHHHHHC---CCCEEEECCCHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECC-EEEEEEEEEHHHHHH
T ss_conf 597789999999999669---9988997476289997437689885998567787653898199-899933216999763
Q ss_pred H-HHHHHCCCH----HCCCCHH----HHHHHHHCCCCCCCCCEEEEEE-------EEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 7-887520120----0038725----6632431157321583134566-------6434411232100001233443100
Q gi|254781095|r 117 S-ALRHGIGGF----HFFYGIP----GSIGGAAYMNAGANNCETSQYV-------VEVHGIDRKGNQHVIPREQLKYQYR 180 (318)
Q Consensus 117 ~-~~~~gl~Gl----E~l~gIP----GTVGGAi~mNAGayG~ei~d~i-------~~V~~~d~~g~~~~l~~~e~~f~YR 180 (318)
T Consensus 80 ~~~~~~~~p~l~~a~~~ia~~qIRn~aTiGGni~-~a~----p~~D~~~~Llal~A~v~l~~~~g-~R~v~~~dF~~g~~ 153 (171)
T pfam00941 80 SPLVAEVFPALAEALRKIASPQIRNVATIGGNIA-NAS----PISDLPPALLALDATVELRSPEG-RRTVPLEDFFLGYR 153 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHEEEEEECCEEC-CCC----CCCCHHHHHHHHCCEEEEECCCC-EEEEEHHHHCCCCC
T ss_conf 9666656499999987138975745777624310-366----65324599997385999986995-29989999467734
Q ss_pred CCCCCCCCCEEEEECC
Q ss_conf 2322467620010023
Q gi|254781095|r 181 SSEITKDLIITHVVLR 196 (318)
Q Consensus 181 ~S~~~~~~iIl~a~l~ 196 (318)
T Consensus 154 ~t~l~~~Eii~~I~iP 169 (171)
T pfam00941 154 KTDLEPGELLTAVRIP 169 (171)
T ss_pred CCCCCCCCEEEEEECC
T ss_conf 4046988759999856