Query         gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 318
No_of_seqs    173 out of 2524
Neff          6.4 
Searched_HMMs 33803
Date          Wed Jun  1 21:35:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781095.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1hsk_A UDP-N-acetylenolpyruvo 100.0 2.2E-29 6.4E-34  205.6   6.8   74  222-295     1-74  (74)
  2 >2gqt_A UDP-N-acetylenolpyruvy  99.9 6.7E-24   2E-28  170.9   4.0   61  229-289     1-61  (62)
  3 >2gqt_A UDP-N-acetylenolpyruvy  99.9 4.5E-23 1.3E-27  165.7   5.1  127   99-228     3-129 (129)
  4 >1hsk_A UDP-N-acetylenolpyruvo  99.8 4.5E-22 1.3E-26  159.4   3.4  123   99-221     8-131 (131)
  5 >3i99_A UDP-N-acetylenolpyruvo  99.8   6E-20 1.8E-24  146.0   6.7   57  239-295     1-57  (57)
  6 >3i99_A UDP-N-acetylenolpyruvo  99.7 5.9E-18 1.8E-22  133.3   6.6   76   14-90      6-82  (106)
  7 >2gqt_A UDP-N-acetylenolpyruvy  99.7 7.4E-18 2.2E-22  132.7   5.3   68   17-90      1-68  (77)
  8 >2ipi_A Aclacinomycin oxidored  99.7 3.8E-17 1.1E-21  128.2   8.9  196   34-237    51-274 (278)
  9 >2bvf_A 6-hydroxy-D-nicotine o  99.7 9.1E-17 2.7E-21  125.8   6.8  180   17-200    12-205 (252)
 10 >1n62_C Carbon monoxide dehydr  99.7 9.8E-18 2.9E-22  132.0   0.5  160   37-199     3-176 (176)
 11 >2vfr_A Xylitol oxidase, aldit  99.6 3.9E-16 1.1E-20  121.9   6.6  169   25-199     5-182 (182)
 12 >1uxy_A MURB, uridine diphosph  99.6 7.5E-16 2.2E-20  120.1   7.3   65   25-90      1-66  (87)
 13 >1uxy_A MURB, uridine diphosph  99.6 1.3E-15 3.8E-20  118.6   5.9  108   99-206     9-121 (124)
 14 >1w1o_A Cytokinin dehydrogenas  99.6 3.8E-15 1.1E-19  115.6   6.5  192   34-226    64-278 (285)
 15 >3fw9_A Reticuline oxidase; BI  99.6 5.1E-15 1.5E-19  114.8   6.9  194   34-237    41-254 (258)
 16 >2i0k_A Oxidoreductase; MIX al  99.5   4E-14 1.2E-18  109.2   9.1  165   34-199    31-220 (220)
 17 >1uxy_A MURB, uridine diphosph  99.5 3.3E-14 9.7E-19  109.7   6.3   46  249-294     1-46  (47)
 18 >3i99_A UDP-N-acetylenolpyruvo  99.5 2.7E-14 8.1E-19  110.2   5.9  108   99-206     9-121 (124)
 19 >1hsk_A UDP-N-acetylenolpyruvo  99.2 1.4E-10 4.2E-15   86.7   8.4   82    8-89     17-100 (121)
 20 >1ffv_C CUTM, flavoprotein of   98.9 6.1E-10 1.8E-14   82.7   3.7  156   38-197     4-174 (176)
 21 >1zr6_A Glucooligosaccharide o  98.8 3.4E-09 9.9E-14   78.0   4.7  110   92-202     2-118 (168)
 22 >2exr_A Cytokinin dehydrogenas  98.4 7.4E-08 2.2E-12   69.5   1.2  137   93-231     8-160 (165)
 23 >1t3q_C Quinoline 2-oxidoreduc  98.4 6.9E-08   2E-12   69.7   1.1  155   38-197     4-173 (174)
 24 >2uuu_A Alkyldihydroxyacetonep  98.1 1.8E-06 5.2E-11   60.8   3.9  129   96-226     6-153 (158)
 25 >1wvf_A 4-cresol dehydrogenase  98.1   5E-06 1.5E-10   58.0   5.1  104   95-200     4-128 (129)
 26 >2yvs_A Glycolate oxidase subu  98.0 3.3E-06 9.9E-11   59.1   3.4  101   99-200     6-114 (114)
 27 >1uxy_A MURB, uridine diphosph  98.0 7.5E-07 2.2E-11   63.2  -0.1   23  226-248     1-49  (49)
 28 >1e8g_A Vanillyl-alcohol oxida  98.0 9.4E-06 2.8E-10   56.2   5.2   84   96-180     6-99  (147)
 29 >1rm6_B 4-hydroxybenzoyl-COA r  98.0 2.7E-05   8E-10   53.3   7.5  151   40-196     7-213 (216)
 30 >3js8_A Cholesterol oxidase; c  97.6 3.3E-05 9.8E-10   52.8   3.0  101   95-199     6-129 (129)
 31 >1f0x_A DLDH, D-lactate dehydr  97.2 0.00036 1.1E-08   46.2   3.8   82    7-88     10-102 (103)
 32 >1wvf_A 4-cresol dehydrogenase  97.0 0.00069   2E-08   44.4   4.0   86    4-89     15-111 (112)
 33 >2uuu_A Alkyldihydroxyacetonep  97.0  0.0003 8.9E-09   46.7   2.1   60   32-91     55-116 (117)
 34 >1e8g_A Vanillyl-alcohol oxida  96.7  0.0014 4.1E-08   42.5   3.4   57   33-89     65-125 (126)
 35 >2exr_A Cytokinin dehydrogenas  96.6  0.0026 7.6E-08   40.8   4.2   82    9-90     27-115 (115)
 36 >1zr6_A Glucooligosaccharide o  96.6  0.0019 5.7E-08   41.6   3.3   55   34-88     38-95  (95)
 37 >3js8_A Cholesterol oxidase; c  95.7   0.013 3.8E-07   36.4   4.1   40   34-73     25-65  (87)
 38 >2w3s_A Xanthine dehydrogenase  94.2   0.051 1.5E-06   32.6   3.7  108   35-195     6-117 (120)
 39 >1v97_A XD, xanthine dehydroge  94.0     0.1   3E-06   30.8   4.9  107   92-200     3-130 (278)
 40 >3i99_A UDP-N-acetylenolpyruvo  92.7   0.027 8.1E-07   34.3   0.3   12  226-237     1-12  (38)
 41 >1rlk_A Hypothetical protein T  75.6     3.1   9E-05   21.4   3.4   56   30-85     43-107 (117)
 42 >1wn2_A Peptidyl-tRNA hydrolas  73.4     5.9 0.00018   19.6   4.4   57   29-85     46-111 (121)
 43 >1xty_A PTH, peptidyl-tRNA hyd  72.9     5.2 0.00015   19.9   4.1   57   30-86     46-111 (120)
 44 >2zv3_A PTH, peptidyl-tRNA hyd  64.1       8 0.00024   18.7   3.5   58   28-85     39-105 (115)
 45 >1q7s_A BIT1, protein CGI-147;  63.5      10  0.0003   18.1   3.9   57   29-85     42-107 (117)
 46 >1iug_A Putative aspartate ami  59.9      12 0.00036   17.6   5.1   71  223-294    40-112 (114)
 47 >2yrr_A Aminotransferase, clas  53.6      15 0.00045   17.0   3.9   65  225-289    51-117 (119)
 48 >1v97_A XD, xanthine dehydroge  53.2     4.4 0.00013   20.4   0.7   41   32-75      4-44  (62)
 49 >1rzw_A Protein AF2095(GR4); b  47.0      19 0.00057   16.3   4.5   59   28-86     38-105 (123)
 50 >1qht_A Protein (DNA polymeras  40.5      24 0.00072   15.7   3.9   48  252-299     7-56  (58)
 51 >1vr5_A Oligopeptide ABC trans  40.4      24 0.00072   15.7   2.9   62  238-301    83-146 (247)
 52 >3hrd_C Nicotinate dehydrogena  39.3      19 0.00057   16.4   2.2   33   42-75      6-38  (57)
 53 >1nov_D Nodamura virus coat pr  38.1     6.7  0.0002   19.2  -0.3   18  124-141    13-30  (44)
 54 >2huf_A Alanine glyoxylate ami  36.1      29 0.00084   15.3   4.3   69  229-298    66-137 (141)
 55 >2gqw_A Ferredoxin reductase;   36.0      18 0.00054   16.5   1.6   35   37-71      2-36  (116)
 56 >2z2q_B Coat protein gamma; wi  35.7     7.8 0.00023   18.8  -0.3   18  124-141    13-30  (44)
 57 >1fjm_A Protein serine/threoni  33.5      31 0.00093   15.0   3.4   47   32-83     52-101 (330)
 58 >2cdu_A NADPH oxidase; flavoen  31.5      34   0.001   14.8   2.4   32   40-71      5-36  (120)
 59 >1jdp_A NPR-C, atrial natriure  28.9      26 0.00078   15.5   1.5  133  100-235    77-220 (232)
 60 >3klj_A NAD(FAD)-dependent deh  27.0      40  0.0012   14.3   3.0   28   43-70      3-30  (102)
 61 >3h63_A Serine/threonine-prote  25.4      43  0.0013   14.1   2.3   46   32-82     55-104 (315)
 62 >3fg2_P Putative rubredoxin re  24.5      42  0.0012   14.2   1.9   29   42-70      7-35  (121)
 63 >1zxo_A Conserved hypothetical  24.1      46  0.0014   14.0   3.3   69   51-124     2-75  (106)
 64 >2fph_X YLMH; division protein  22.4      42  0.0012   14.2   1.5   33  238-270    25-57  (86)
 65 >1giy_D 50S ribosomal protein   21.3      45  0.0013   14.0   1.5   38  137-174    35-72  (84)
 66 >1rl2_A Protein (ribosomal pro  21.2      51  0.0015   13.7   1.7   40  136-175    90-129 (137)
 67 >1vq8_A 50S ribosomal protein   21.2      44  0.0013   14.1   1.4   39  137-175   116-154 (168)
 68 >3e7a_A PP-1A, serine/threonin  20.4      54  0.0016   13.5   3.9   47   31-82     50-99  (299)
 69 >2e1b_A PH0108, 216AA long hyp  20.3      35   0.001   14.7   0.7   34   47-80     55-89  (128)

No 1  
>>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:231-304)
Probab=99.96  E-value=2.2e-29  Score=205.63  Aligned_cols=74  Identities=39%  Similarity=0.576  Sum_probs=72.1

Q ss_pred             CCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf             66704658897278985100026318688206677871567708996899799999999999999999984754
Q gi|254781095|r  222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL  295 (318)
Q Consensus       222 ~~~~s~GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~  295 (318)
                      +++||||||||||++.+||||||+|||||+++|+|+||++|||||||.|+||++|+++||++||++|+++|||+
T Consensus         1 l~~psaGS~FkNP~~~~Ag~LIe~~GlkG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~GI~   74 (74)
T 1hsk_A            1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIE   74 (74)
T ss_dssp             TTSCEECCCBCCCTTSCHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             77874263378876600799999848898777698996788858997899899999999999999999988982


No 2  
>>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:199-260)
Probab=99.89  E-value=6.7e-24  Score=170.91  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=59.9

Q ss_pred             EEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8897278985100026318688206677871567708996899799999999999999999
Q gi|254781095|r  229 STFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVF  289 (318)
Q Consensus       229 SvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~  289 (318)
                      ||||||++.+||||||+|||||+++|+|+||+||||||||.|+||++|+++|+++||+.|+
T Consensus         1 S~FknP~g~~Ag~LIe~~GlKG~~~G~a~vs~khanfivN~g~ata~di~~l~~~i~~~Vk   61 (62)
T 2gqt_A            1 CAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEELP   61 (62)
T ss_dssp             CCBCCCTTCCHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHCCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             1788689976366566502479654497982347858998999899999999999999879


No 3  
>>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:70-198)
Probab=99.87  E-value=4.5e-23  Score=165.70  Aligned_cols=127  Identities=31%  Similarity=0.401  Sum_probs=119.7

Q ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCC
Q ss_conf             26651233112215677778875201200038725663243115732158313456664344112321000012334431
Q gi|254781095|r   99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQ  178 (318)
Q Consensus        99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~  178 (318)
                      ++..++|+||+.|.+|.+++.++||++.++++.+|+||||++.||+++||.++.+++.++.++ .+|++++++++|+.|+
T Consensus         3 ~~~~v~v~aG~~~~~l~~~l~~~gl~~~~~~~~~~~tvGG~i~~~a~~~g~~~~~~v~~~~v~-~~G~~~~~~~~~~~~~   81 (129)
T 2gqt_A            3 YDLKGWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALEAVEVF-HDGAFHVYCPEELGFG   81 (129)
T ss_dssp             BCTTSEEETTSBHHHHHHHHHHTTEESCGGGTTCCCBHHHHHHTTCEETTEEGGGGEEEEEEE-ETTEEEEECGGGSCCB
T ss_pred             CCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCEECCEEEEEEEEEEEEE-CCCCEEEECHHHCCCC
T ss_conf             331002255020477788887660354333156135442442102123434877789999998-2897799726980305


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             00232246762001002354565431001222100110001556670465
Q gi|254781095|r  179 YRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGG  228 (318)
Q Consensus       179 YR~S~~~~~~iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP~~~~s~G  228 (318)
                      ||.+.+....||++++|++.|.++..++.+|.++ .+|++.|| ..||||
T Consensus        82 ~~~g~~g~~Giit~~~l~l~p~~~~~i~~~~~~~-~~~~~~~p-~~~saG  129 (129)
T 2gqt_A           82 YRKSHLPPGGIVTRVRLKLKERPKEEILRRMAEV-DRARKGQP-KRKSAG  129 (129)
T ss_dssp             TTBCCCSTTCEEEEEEECCEECCHHHHHHHHHHH-HHHTTTSC-SSCSSS
T ss_pred             CCCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHH-HCCCCCCC-CCCCCC
T ss_conf             0125676432011110001568889999999876-40235787-678775


No 4  
>>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:100-230)
Probab=99.84  E-value=4.5e-22  Score=159.37  Aligned_cols=123  Identities=29%  Similarity=0.467  Sum_probs=118.1

Q ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCC
Q ss_conf             26651233112215677778875201200038725663243115732158313456664344112321000012334431
Q gi|254781095|r   99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQ  178 (318)
Q Consensus        99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~  178 (318)
                      +...++|+||+.|.+|.+++.++||.+.++.+++||||||++.||+++++++++|++.++++++.+|++.++++++++|.
T Consensus         8 ~~~~v~v~aGv~~~~l~~~l~~~G~~~~~~~~~~~g~igg~~~~~~~~~~g~~~d~v~~~~~v~~~G~i~~~~~~~~~~~   87 (131)
T 1hsk_A            8 SDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELD   87 (131)
T ss_dssp             ETTEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCSBHHHHHHHTCEETTEEHHHHEEEEEEECTTSCEEEEETTTTTCB
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHH
T ss_conf             49839996485079999999984679834687437435000112566677267899888999944996898226776565


Q ss_pred             CCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf             00232246-76200100235456543100122210011000155
Q gi|254781095|r  179 YRSSEITK-DLIITHVVLRGFPESQNIISAAIANVCHHRETVQP  221 (318)
Q Consensus       179 YR~S~~~~-~~iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP  221 (318)
                      ||.+.++. ..||++++|++.|..+..+...+.++.+.|+++||
T Consensus        88 ~~~~~~~~~~GIit~~~l~l~~~~~~~i~~~~~~~~~~r~~~~P  131 (131)
T 1hsk_A           88 YRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQP  131 (131)
T ss_dssp             TTBCHHHHTTCEEEEEEEECEECCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             41666776652899899865368816779999999998860498


No 5  
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:277-333)
Probab=99.80  E-value=6e-20  Score=145.97  Aligned_cols=57  Identities=32%  Similarity=0.543  Sum_probs=56.0

Q ss_pred             CHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf             100026318688206677871567708996899799999999999999999984754
Q gi|254781095|r  239 AWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL  295 (318)
Q Consensus       239 A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~  295 (318)
                      ||||||+|||||+++|+|+||+||||||||.|+||++|+++|++.||+.|+++|||+
T Consensus         1 Ag~LIe~~GlKG~~~G~a~vs~khanflvN~g~at~~di~~l~~~i~~~V~~~fgI~   57 (57)
T 3i99_A            1 AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLXLAADIQQRVFNCYGIE   57 (57)
T ss_dssp             HHHHHHHTTCTTCEETTEEECTTSTTEEEECSSCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999837588702697985678858998999999999999999999999987981


No 6  
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357)
Probab=99.73  E-value=5.9e-18  Score=133.35  Aligned_cols=76  Identities=22%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             HHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC
Q ss_conf             8750662775488001522576614889999689899999999856-2998999847520366048840220221123
Q gi|254781095|r   14 GKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA   90 (318)
Q Consensus        14 ~~~~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~   90 (318)
                      ..++++++++|+||++||||||||+|++|+.|++.+||.+++++++ +++|++|||+|||+||+| +|+|+||++...
T Consensus         6 ~~~~~~~I~~~~~L~~~tTfrIGG~A~~lv~p~s~eeL~~il~~~~~~~ip~~ILG~GSNiLf~D-g~~GlVI~~~~~   82 (106)
T 3i99_A            6 YPKTTXQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNXLFTC-HYTGXIVVNRLN   82 (106)
T ss_dssp             ---CCSCCEEEEESGGGSTTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECS-CEEEEEEEECCC
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEC-CCCCCEEEECCC
T ss_conf             88767368618987657443407187299987999999999998876699889985843799806-986625898578


No 7  
>>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:1-69,A:261-268)
Probab=99.71  E-value=7.4e-18  Score=132.74  Aligned_cols=68  Identities=29%  Similarity=0.364  Sum_probs=63.0

Q ss_pred             HCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCEECCHHHHCCC
Q ss_conf             06627754880015225766148899996898999999998562998999847520366048840220221123
Q gi|254781095|r   17 LRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVVLRLSNA   90 (318)
Q Consensus        17 ~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~   90 (318)
                      ++++++.|+||++||||||||+|++|++|+|.+|+.+      +++|+++||+|||+||+|++++|+||++.+.
T Consensus         1 ~~~~i~~~~~L~~~tT~~IGG~A~~~~~p~s~e~l~~------~~~p~~viG~GSNlL~~D~~~~g~VI~~~~~   68 (77)
T 2gqt_A            1 MEFMRVERVLLKDYTTLGVGGPAELWTVETREELKRA------TEAPYRVLGNGSNLLVLDEGVPERVIRLAGE   68 (77)
T ss_dssp             -CCCEEEEEEGGGGSSSCCCCEEEEEEECSHHHHHHH------TTSCEEECSSSSSEEECTTCCSSEEEEECGG
T ss_pred             CCCCEECCCCCCCCCEEEECEEEEEEECCCHHHHHHH------HCCCCEEEECCEEEEEECCCEECEEEEEEEE
T ss_conf             9861117665676434313708999971999999987------5899189936278999689890326554320


No 8  
>>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} (A:1-237,A:481-521)
Probab=99.71  E-value=3.8e-17  Score=128.21  Aligned_cols=196  Identities=8%  Similarity=-0.043  Sum_probs=145.2

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEEECCCEECCHHHHCCCCCCCEEEEC-CCCCCCCCEEEH
Q ss_conf             7661488999968989999999985-62998999847520366048840220221123443113302-665123311221
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN-HCEMIVGARCSG  111 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~~~i~~~~-~~~i~v~AG~~~  111 (318)
                      ...+..+.++.|++++|+.++++++ ++++|+.+.|+|+|..-.....++.+|.+... +..++++. ...++|+||+.|
T Consensus        51 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~rGgGhs~~g~~~~~~~~vi~~~~~-~~~~~~d~~~~~v~v~aG~~~  129 (278)
T 2ipi_A           51 RFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ-MRQVFYDSGKRAFAVEPGATL  129 (278)
T ss_dssp             TCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT-CCCEEEETTTTEEEECTTSBH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCC-CCCEEECCCCCEEEECCCCCH
T ss_conf             6768998899559999999999999987980999899837563836779759998778-998798389998999068199


Q ss_pred             HHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEEEEC----------CCCCC
Q ss_conf             56777788752012000387256632431157321-----5831345666434411232100001----------23344
Q gi|254781095|r  112 KSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQHVIP----------REQLK  176 (318)
Q Consensus       112 ~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~~l~----------~~e~~  176 (318)
                      .++.+.+.++|+......+.-++|+||++.+|++.     || .+.|++.++++++.+|++..+.          ..|+.
T Consensus       130 ~~l~~~l~~~g~~~~~~~~~~~~tiGG~~~~~~~g~~s~~~G-~~~d~v~~~~vV~~dG~~~~~~~~~~~~~~~~~~dlf  208 (278)
T 2ipi_A          130 GETYRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDG-VVADHLYAVEVVVVDASGRARKVVATSAADDPNRELW  208 (278)
T ss_dssp             HHHHHHHHHHHSBCCCCCSCTTCBHHHHTTTTCCCTTHHHHC-CGGGGEEEEEEEEECTTSCEEEEEEECCTTCTTHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCHHH
T ss_conf             999999997189243798767302357677886078768664-0004401379998778089975322012235544899


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCH-----------HHHHHCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             310023224676200100235456543100-----------1222100110001556670465889727898
Q gi|254781095|r  177 YQYRSSEITKDLIITHVVLRGFPESQNIIS-----------AAIANVCHHRETVQPIKEKTGGSTFKNPTGH  237 (318)
Q Consensus       177 f~YR~S~~~~~~iIl~a~l~l~~~~~~~i~-----------~~~~~~~~~R~~~qP~~~~s~GSvFkNP~~~  237 (318)
                      ++.|......-.||++++|++.|..+....           .....+.+.+.+..|.+      ||++|...
T Consensus       209 ~a~~~Gs~G~lGIVt~~tlrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  274 (278)
T 2ipi_A          209 WAHTGGGGGNFGIVTRYWFRTPGATGTDPTSGVPWYTLYYKGNYPRLQKVKARWDPRD------VFRHALSV  274 (278)
T ss_dssp             HHTTTSCSSSSCEEEEEEECCSSCCSSCGCCSCCHHHHHHGGGHHHHHHHHHHHCTTC------CSCCTTCC
T ss_pred             HHHHHHHHCCCCEEEEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCC
T ss_conf             9887531011313799999941588626810126899865789999999999769625------67989794


No 9  
>>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* (A:1-204,A:412-459)
Probab=99.67  E-value=9.1e-17  Score=125.85  Aligned_cols=180  Identities=14%  Similarity=0.128  Sum_probs=141.9

Q ss_pred             HCCEEEE--CCCCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC
Q ss_conf             0662775--488001522---576614889999689899999999856-2998999847520366048840220221123
Q gi|254781095|r   17 LRGKFQE--NFPLKQITW---FRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA   90 (318)
Q Consensus        17 ~~g~i~~--n~~L~~~tt---~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~   90 (318)
                      +.|++..  +.+....++   -.....+..++.|++++|+++++++++ +++|+.+.|+|+|..-..-.-++++|.++. 
T Consensus        12 ~~g~v~~p~~~~y~~~~~~w~~~~~~~P~~Vv~P~s~eeV~~iV~~a~~~~~~v~vrGgGhs~~g~~~~~~givIdl~~-   90 (252)
T 2bvf_A           12 IQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRL-   90 (252)
T ss_dssp             CSSEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTCCSSSEEEECTT-
T ss_pred             CCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCC-
T ss_conf             9925989898237999978855646788889964999999999999998797699988996889875887989999857-


Q ss_pred             CCCCEEEECC-CCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC----CCCEEEEEEEEEEEECCCC
Q ss_conf             4431133026-6512331122156777788752012000387256632431157321----5831345666434411232
Q gi|254781095|r   91 GFSNIEVRNH-CEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA----NNCETSQYVVEVHGIDRKG  165 (318)
Q Consensus        91 ~~~~i~~~~~-~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa----yG~ei~d~i~~V~~~d~~g  165 (318)
                       ++.++++.+ ..++|+||+.|.+|.+++.++|+......+..+|+.|++..++.|.    ||. +.|+|.++++++++|
T Consensus        91 -l~~i~id~~~~~v~V~aGv~~~~l~~~l~~~G~~~~~~~~~~~g~gG~~~~~g~G~~s~~yG~-~~d~V~~~evV~~~G  168 (252)
T 2bvf_A           91 -MNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGL-ASDNILGATLVTATG  168 (252)
T ss_dssp             -CCCEEEETTTTEEEEETTCBHHHHHHHHHTTTEEECCCSCTTSBHHHHHTTCCCCTTHHHHCC-GGGGEEEEEEECTTS
T ss_pred             -CCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHEEECCCCCCCCCCCCCEECCCCCCCCCCCCC-HHCCCCEEEEEECCC
T ss_conf             -898798278998999867745999998542003223676446544521213655555565123-100211799995599


Q ss_pred             CEEEECCC---CCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             10000123---344310023224676200100235456
Q gi|254781095|r  166 NQHVIPRE---QLKYQYRSSEITKDLIITHVVLRGFPE  200 (318)
Q Consensus       166 ~~~~l~~~---e~~f~YR~S~~~~~~iIl~a~l~l~~~  200 (318)
                      ++++.+++   |+.+++|.|. ..-.||++++|++.|-
T Consensus       169 ~i~~~~~~~~~dLf~a~~Gs~-G~lGIIt~~tlkl~P~  205 (252)
T 2bvf_A          169 DVIYCSDDERPELFWAVRGAG-PNFGVVTEVEVQLYEL  205 (252)
T ss_dssp             CEEEEESSSSHHHHHHHHHHG-GGTCEEEEEEEEEEEG
T ss_pred             CEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEEEEECE
T ss_conf             799973888866999999607-9986016999998615


No 10 
>>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} (C:1-176)
Probab=99.66  E-value=9.8e-18  Score=131.96  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=129.3

Q ss_pred             CEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECCCEE-CCHHHHCCC-CCCCEEEECCCCCCCCCEEEHH
Q ss_conf             148899996898999999998562998999847520366--048840-220221123-4431133026651233112215
Q gi|254781095|r   37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDAGIR-GVVLRLSNA-GFSNIEVRNHCEMIVGARCSGK  112 (318)
Q Consensus        37 G~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~~~~-G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~  112 (318)
                      |++..|+.|.|.+|+.+++....  ....++++||++.+  +++..+ +++|++++. .++.++.+++ .+++|||+.+.
T Consensus         3 g~~~~~~~P~s~~el~~ll~~~~--~~~~~~aGGT~l~~~~~~~~~~~~~vI~l~~i~el~~i~~~~~-~l~iGA~~tl~   79 (176)
T 1n62_C            3 PGSFDYHRPKSIADAVALLTKLG--EDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGT-DVVIGAMTTQH   79 (176)
T ss_dssp             CCCCEEECCSSHHHHHHHHHHHG--GGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETT-EEEEETTCBHH
T ss_pred             CCCCCEECCCCHHHHHHHHHHCC--CCCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-EEEEEECCCHH
T ss_conf             89865568899999999998519--9988999455499998648889996998977887755998686-69994056299


Q ss_pred             HHHHHHHHHHCCCH--HCCCCHHH-------HHHHHHCCCCCCCCCEEEEEEEEEEEECCCCC-EEEECCCCCCCCCCCC
Q ss_conf             67777887520120--00387256-------63243115732158313456664344112321-0000123344310023
Q gi|254781095|r  113 SLANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETSQYVVEVHGIDRKGN-QHVIPREQLKYQYRSS  182 (318)
Q Consensus       113 ~l~~~~~~~gl~Gl--E~l~gIPG-------TVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~-~~~l~~~e~~f~YR~S  182 (318)
                      ++.+.+...+..+.  |++..|++       ||||+++||+++++..+.+....+++...+++ .++++.+|+.++||++
T Consensus        80 ~l~~~~~~~~~~~~l~~~~~~~a~~~vRn~aTiGGni~~~~~~~d~~~~l~al~a~v~~~~~~g~r~~~~~df~~~~~~~  159 (176)
T 1n62_C           80 ALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFT  159 (176)
T ss_dssp             HHHHCHHHHHHCHHHHHHHTTSSCHHHHHHCBHHHHHHSCCTTCSHHHHHHHHTCEEEEEETTEEEEEEHHHHEEETTEE
T ss_pred             HHHCCHHHHHHCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             88609566666769999998528876552202246101578754442045540442487448974224421245773223


Q ss_pred             CCCCCCCEEEEECCCCC
Q ss_conf             22467620010023545
Q gi|254781095|r  183 EITKDLIITHVVLRGFP  199 (318)
Q Consensus       183 ~~~~~~iIl~a~l~l~~  199 (318)
                      .++.+++|+++++...|
T Consensus       160 ~l~~~eii~~v~ip~~p  176 (176)
T 1n62_C          160 AIEPGELLTAIRIPVPP  176 (176)
T ss_dssp             SCCTTCEEEEEEEECCC
T ss_pred             CCCCCCEEEEEEECCCC
T ss_conf             35754347999922477


No 11 
>>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* (A:1-182)
Probab=99.64  E-value=3.9e-16  Score=121.87  Aligned_cols=169  Identities=17%  Similarity=0.117  Sum_probs=129.1

Q ss_pred             CCCCCCCCC--CCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCEECCH-HHHCCCCCCCEEEE-CC
Q ss_conf             880015225--766148899996898999999998562998999847520366048840220-22112344311330-26
Q gi|254781095|r   25 FPLKQITWF--RTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVV-LRLSNAGFSNIEVR-NH  100 (318)
Q Consensus        25 ~~L~~~tt~--rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~D~~~~G~v-I~l~~~~~~~i~~~-~~  100 (318)
                      .....|++|  +.+++++.++.|+|++|++++++++   .|+.+.|+|+|....+...++.+ |.++.. ...++.+ +.
T Consensus         5 ~~~~~~~~~~~~~~~~p~~v~~P~s~~ev~~~v~~a---~~v~~~g~g~~~~~~~~~~~~~vii~~~~~-~~~~~~d~~~   80 (182)
T 2vfr_A            5 MSDITVTNWAGNITYTAKELLRPHSLDALRALVADS---ARVRVLGSGHSFNEIAEPGDGGVLLSLAGL-PSVVDVDTAA   80 (182)
T ss_dssp             CCCCCCBCSSSSCBCSCSSCBCCSSHHHHHHHHHHC---SSEEECSSCCCCSSTTCCCTTCEEECSTTS-CCCEEEETTT
T ss_pred             CCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCEEEEECCCC-CCCEEECCCC
T ss_conf             568776037997022889899659999999999839---977998088688887687898199987468-9846981899


Q ss_pred             CCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC----CCCEEEEEEEEEEEECCCCCEE-EECCCCC
Q ss_conf             6512331122156777788752012000387256632431157321----5831345666434411232100-0012334
Q gi|254781095|r  101 CEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA----NNCETSQYVVEVHGIDRKGNQH-VIPREQL  175 (318)
Q Consensus       101 ~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa----yG~ei~d~i~~V~~~d~~g~~~-~l~~~e~  175 (318)
                      ..++++||+.+.++.+.+.++||.--...+..+.+.|++..++.|.    || .+.|.+.++++++.+|++. .-..+|+
T Consensus        81 ~~v~v~aGv~~~~l~~~l~~~gl~~~~~~~~~~~~gG~~~~~~~g~~~~~~G-~~~d~V~~~~iV~~~G~~~~~~~~~dl  159 (182)
T 2vfr_A           81 RTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGSGVGNG-SLASVVREVELVTADGSTVVIARGDER  159 (182)
T ss_dssp             TEEEEETTCBHHHHHHHHHHTTEECSCCCSSSCSBHHHHHHHTCCCCCTTCC-CGGGGEEEEEEECTTSCEEEEETTSTT
T ss_pred             CEEEECCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCEEEECCCCCE
T ss_conf             9899908849799888876214434657645741430210145567777877-632022554785169946882488620


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             431002322467620010023545
Q gi|254781095|r  176 KYQYRSSEITKDLIITHVVLRGFP  199 (318)
Q Consensus       176 ~f~YR~S~~~~~~iIl~a~l~l~~  199 (318)
                      .+++|.|. ..-.||++++|++.|
T Consensus       160 ~~a~~gs~-G~~GIVt~~~l~l~P  182 (182)
T 2vfr_A          160 FGGAVTSL-GALGVVTSLTLDLEP  182 (182)
T ss_dssp             GGGTSSCT-TTTCEEEEEEEECEE
T ss_pred             EEECCCCC-CCCCEEEEEEEEECC
T ss_conf             00004555-565102799999605


No 12 
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:1-66,A:320-340)
Probab=99.63  E-value=7.5e-16  Score=120.05  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC
Q ss_conf             88001522576614889999689899999999856-2998999847520366048840220221123
Q gi|254781095|r   25 FPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA   90 (318)
Q Consensus        25 ~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~   90 (318)
                      +||++|||||+||+|++|++|+|.+||.+++++++ ++.|+++||+|||+||+| +|+|+||++..+
T Consensus         1 ~sLs~~tTf~Igg~A~~~i~p~s~eeL~~ll~~~~~~~~p~~ILG~GSNlLf~d-~f~GiVI~~~~k   66 (87)
T 1uxy_A            1 HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLE-DYRGTVIINRIK   66 (87)
T ss_dssp             CBCGGGSTTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECS-CEEEEEEEECCC
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEC-CCCCEEEEECCC
T ss_conf             988666408768180399997999999999998887699889992848899947-970449998888


No 13 
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:67-190)
Probab=99.59  E-value=1.3e-15  Score=118.61  Aligned_cols=108  Identities=26%  Similarity=0.373  Sum_probs=99.3

Q ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCCCCC
Q ss_conf             2665123311221567777887520120003872566324311573215831345666434411-232100001233443
Q gi|254781095|r   99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID-RKGNQHVIPREQLKY  177 (318)
Q Consensus        99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d-~~g~~~~l~~~e~~f  177 (318)
                      ++..++|+||+.|.+|.+++.++||.+.++.+.+||||||++.||++.|++++.|++.++++++ .+|+++++.+++.++
T Consensus         9 ~~~~v~ve~Gv~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~~~~~~g~~~~~~~~~~~v~~~~G~~~~~~~~~~~~   88 (124)
T 1uxy_A            9 DAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRF   88 (124)
T ss_dssp             SEEEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCSBGGGTTTTTCEETTEEGGGTEEEEEEEETTTTEEEEEETGGGTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHCC
T ss_conf             42014532146479999999876314425425534554355120123303556665545210011488488636013100


Q ss_pred             CCCCCCCCC---C-CCEEEEECCCCCCCCCCCH
Q ss_conf             100232246---7-6200100235456543100
Q gi|254781095|r  178 QYRSSEITK---D-LIITHVVLRGFPESQNIIS  206 (318)
Q Consensus       178 ~YR~S~~~~---~-~iIl~a~l~l~~~~~~~i~  206 (318)
                      +|+++.+..   . .||++++|++.|..+..++
T Consensus        89 ~~~~~~~~~~g~~~gIVt~~~l~l~p~~~~~i~  121 (124)
T 1uxy_A           89 GYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLT  121 (124)
T ss_dssp             BTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCC
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHH
T ss_conf             211132563234650489999851655423220


No 14 
>>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} (A:1-245,A:495-534)
Probab=99.57  E-value=3.8e-15  Score=115.58  Aligned_cols=192  Identities=15%  Similarity=0.135  Sum_probs=141.8

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CC---CCEEEECCCCEEEEECCCEECCHHHHCCCCC----CCEEEE-CCCCCC
Q ss_conf             76614889999689899999999856-29---9899984752036604884022022112344----311330-266512
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SD---IPITIVGLGSNILVRDAGIRGVVLRLSNAGF----SNIEVR-NHCEMI  104 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~---~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~----~~i~~~-~~~~i~  104 (318)
                      .....+..++.|+|++|+++++++++ ++   +|+.+.|+|++..-.....+|++|.++....    ..++.+ ++..++
T Consensus        64 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~g~~~~~v~~rg~Ghs~~g~~~~~~gvvid~~~l~~~~~~~~~~id~~~~~v~  143 (285)
T 1w1o_A           64 ITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVD  143 (285)
T ss_dssp             SCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTTSEEEEGGGGGCSSSSCSEEECTTSSEEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCEEE
T ss_conf             64677887995599999999999998489999569998998088887658898999885567654567346738998899


Q ss_pred             CCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCC----CEEEEEEEEEEEECCCCCEEEECCC---CCCC
Q ss_conf             33112215677778875201200038725663243115732158----3134566643441123210000123---3443
Q gi|254781095|r  105 VGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANN----CETSQYVVEVHGIDRKGNQHVIPRE---QLKY  177 (318)
Q Consensus       105 v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG----~ei~d~i~~V~~~d~~g~~~~l~~~---e~~f  177 (318)
                      |+||+.+.++.+++.++|+.-....+..++||||.+.+|++.+.    +.+.|.+.++++++++|++.+++++   |+.+
T Consensus       144 V~aGv~~~~l~~~L~~~Gl~~~~~~~~~~~tvGG~i~~g~~G~~s~~~G~~~d~v~~~~vV~~~G~vv~~s~~~~~dLf~  223 (285)
T 1w1o_A          144 AGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD  223 (285)
T ss_dssp             EETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHH
T ss_pred             ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCCCCCCCC
T ss_conf             96773799999999976975367888887310443221344554543010100122157871687679952544323333


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCH-------HHHHHCCCCCCCCCCCCCEE
Q ss_conf             10023224676200100235456543100-------12221001100015566704
Q gi|254781095|r  178 QYRSSEITKDLIITHVVLRGFPESQNIIS-------AAIANVCHHRETVQPIKEKT  226 (318)
Q Consensus       178 ~YR~S~~~~~~iIl~a~l~l~~~~~~~i~-------~~~~~~~~~R~~~qP~~~~s  226 (318)
                      .+|.+.= .-.||++++|++.|...+...       ++...+.+.++.-.|...-|
T Consensus       224 a~~G~~G-~lGIVt~~tlkl~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (285)
T 1w1o_A          224 AVLGGLG-QFGVITRARIAVEPAHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLS  278 (285)
T ss_dssp             HHTTCTT-CSEEEEEEEEEEEECCSSHHHHHHHHCHHHHHHHHHHHHHHCTTCCBC
T ss_pred             CCCCCCC-CCCEEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             3346788-652036777631478468999999869999999999999869511179


No 15 
>>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* (A:1-218,A:456-495)
Probab=99.57  E-value=5.1e-15  Score=114.79  Aligned_cols=194  Identities=13%  Similarity=0.084  Sum_probs=135.7

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEEC--CCEECCHHHHCCCCCCCEEEEC-CCCCCCCCEE
Q ss_conf             76614889999689899999999856-299899984752036604--8840220221123443113302-6651233112
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRD--AGIRGVVLRLSNAGFSNIEVRN-HCEMIVGARC  109 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D--~~~~G~vI~l~~~~~~~i~~~~-~~~i~v~AG~  109 (318)
                      +.......++.|+|++|++++++++. +++|+.+.|+|++.--..  .+-.+++|.++.  ++.++.+. ...++|+||+
T Consensus        41 ~~~~~P~~Vv~P~s~eev~~~Vk~a~~~~~~v~~rGgGhs~~g~~~~~~~~~ivIdl~~--l~~i~~d~~~~~v~V~aGv  118 (258)
T 3fw9_A           41 SLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMN--LNRVSIDLESETAWVESGS  118 (258)
T ss_dssp             TTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTT--CCCEEEETTTTEEEEETTC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC--CCCEEEECCCCEEEEECCC
T ss_conf             88898777997099999999999999879759998699678887165899989999877--9988984799989996587


Q ss_pred             EHHHHHHHHHHHHCCCHHCCCC--HHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEEEECC--CCCCCCCC
Q ss_conf             2156777788752012000387--256632431157321-----58313456664344112321000012--33443100
Q gi|254781095|r  110 SGKSLANSALRHGIGGFHFFYG--IPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQHVIPR--EQLKYQYR  180 (318)
Q Consensus       110 ~~~~l~~~~~~~gl~GlE~l~g--IPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~~l~~--~e~~f~YR  180 (318)
                      .|.+|..++.++|+. +.+..+  -..|+||++.+|+..     || .++|+|.++++++++|++.+.+.  .|+.|++|
T Consensus       119 ~~~~l~~~L~~~g~~-l~~~~g~~~~~tigG~ia~~~~G~~s~~~G-~~~d~v~~~~vV~~dG~vv~~~~~~~dl~~a~~  196 (258)
T 3fw9_A          119 TLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYG-LAADNVVDAILIDANGAILDRQAMGEDVFWAIR  196 (258)
T ss_dssp             BHHHHHHHHHHHCSS-EECCCCSCTTCBHHHHHHTCCCCTTHHHHC-CGGGGEEEEEEECTTCCEECHHHHCHHHHHHHT
T ss_pred             CHHHHHHHHHHHCCC-CCCCCCCCCCCEEEEEECCCCCCCCCCEEC-CHHHEEEEEEEECCCCEEEECCCCCCHHHHHHH
T ss_conf             999999999980880-466875688534441214544588742204-242238999998269809984688716799998


Q ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCH-------HHHHHCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             23224676200100235456543100-------1222100110001556670465889727898
Q gi|254781095|r  181 SSEITKDLIITHVVLRGFPESQNIIS-------AAIANVCHHRETVQPIKEKTGGSTFKNPTGH  237 (318)
Q Consensus       181 ~S~~~~~~iIl~a~l~l~~~~~~~i~-------~~~~~~~~~R~~~qP~~~~s~GSvFkNP~~~  237 (318)
                      ......-.||+++++++.|.....-.       ...+++.+.+....|.+      +|.||.-.
T Consensus       197 ~gs~G~lGIIt~vtl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  254 (258)
T 3fw9_A          197 GGGGGVWGAIYAWKIKLLPVPEISRSWGESYFLSNYERLIRAKTLIDPNN------VFNHPQSI  254 (258)
T ss_dssp             TSCTTSSCEEEEEEEECEECCSHHHHHHHHHHGGGHHHHHHHHHHHCTTC------CSCCTTCC
T ss_pred             HHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCC
T ss_conf             54120144327999995448973467898765778999999999769343------27988588


No 16 
>>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:1-220)
Probab=99.54  E-value=4e-14  Score=109.17  Aligned_cols=165  Identities=16%  Similarity=0.093  Sum_probs=121.8

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHH-------HCCCCCCCEEEE-CCCCCC
Q ss_conf             76614889999689899999999856-299899984752036604884022022-------112344311330-266512
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLR-------LSNAGFSNIEVR-NHCEMI  104 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~-------l~~~~~~~i~~~-~~~~i~  104 (318)
                      ++...+.+++.|+|++|++++++++. ++.|+.+.|+|++.....-...+.++.       +..+ ...++.+ +...++
T Consensus        31 ~~~~~p~~vv~P~t~~eV~~~v~~a~~~~~~v~~~g~Ghs~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~v~  109 (220)
T 2i0k_A           31 EIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLN-GITVNTGGPVATVT  109 (220)
T ss_dssp             SSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSC-CEEEECCSSSCEEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHCCCC-CEEEEECCCCCEEE
T ss_conf             73568888995799999999999999879839998898576657347998733799862122776-54554448998899


Q ss_pred             CCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC--------CC------CEEEEEEEEEEEECCCCCEEEE
Q ss_conf             331122156777788752012000387256632431157321--------58------3134566643441123210000
Q gi|254781095|r  105 VGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA--------NN------CETSQYVVEVHGIDRKGNQHVI  170 (318)
Q Consensus       105 v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa--------yG------~ei~d~i~~V~~~d~~g~~~~l  170 (318)
                      ++||+.+.++.+++.++|+.--......+.++||+..++++.        +|      +.+.|+|.++++++.+|++.++
T Consensus       110 v~aGv~~~~l~~~l~~~g~~~~~~~~~~~~s~~g~~~~~~~~~G~~~~~~~G~~~~~~g~~~d~v~~~~vv~~~G~~~~~  189 (220)
T 2i0k_A          110 AGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYAL  189 (220)
T ss_dssp             EETTSBHHHHHHHHHHTTEECSSCCSCTTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSSSEEE
T ss_pred             ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCEEEE
T ss_conf             90785938999999853663666634552112575445566542016745565422454153326568999369988996


Q ss_pred             CC-CCCCCCCCCCCCCC-CCCEEEEECCCCC
Q ss_conf             12-33443100232246-7620010023545
Q gi|254781095|r  171 PR-EQLKYQYRSSEITK-DLIITHVVLRGFP  199 (318)
Q Consensus       171 ~~-~e~~f~YR~S~~~~-~~iIl~a~l~l~~  199 (318)
                      ++ ++.++.+....-.. ..||++++|++.|
T Consensus       190 ~~~~~~~~~l~~a~~gg~~Giit~~t~~~~P  220 (220)
T 2i0k_A          190 ETYQRNDPRITPLLTNLGRCFLTSVTMQAGP  220 (220)
T ss_dssp             EEEETTSGGGHHHHSCTTSSCEEEEEEECEE
T ss_pred             CCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
T ss_conf             4888821888973889873025679998740


No 17 
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:273-319)
Probab=99.50  E-value=3.3e-14  Score=109.70  Aligned_cols=46  Identities=33%  Similarity=0.529  Sum_probs=45.5

Q ss_pred             CCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8820667787156770899689979999999999999999998475
Q gi|254781095|r  249 RGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI  294 (318)
Q Consensus       249 KG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi  294 (318)
                      ||+++|+|+||+||||||||.|+||++|+++|+++||+.|+++|||
T Consensus         1 KG~~~G~a~vs~khA~~lvN~g~at~~dv~~L~~~v~~~V~~~fGI   46 (47)
T 1uxy_A            1 KGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNV   46 (47)
T ss_dssp             TTCEETTEEECSSCTTEEEECSSCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8971469698167886899899999999999999999999998898


No 18 
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:83-206)
Probab=99.50  E-value=2.7e-14  Score=110.19  Aligned_cols=108  Identities=26%  Similarity=0.303  Sum_probs=99.6

Q ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCCCCC
Q ss_conf             2665123311221567777887520120003872566324311573215831345666434411-232100001233443
Q gi|254781095|r   99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID-RKGNQHVIPREQLKY  177 (318)
Q Consensus        99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d-~~g~~~~l~~~e~~f  177 (318)
                      ++..++|+||+.|.+|.+++.++||...++.++.|+||||++.||++++++.+.|++.++++++ .+|+..++..++..+
T Consensus         9 ~~~~v~veaGv~~~~l~~~l~~~gl~~~~~~~~~~~tiGG~~~~~~~~~~g~~~~~v~~~~~v~~~~G~~~~~~~~~~~~   88 (124)
T 3i99_A            9 DYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTVKRLTXEECQF   88 (124)
T ss_dssp             SEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCSBGGGTTTTTCEETTEEGGGTEEEEEEEETTTTEEEEEETGGGCC
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCC
T ss_conf             66347997226518999999877325515643056554366221223443213221001266531588376313200014


Q ss_pred             CCCCCCCCC----CCCEEEEECCCCCCCCCCCH
Q ss_conf             100232246----76200100235456543100
Q gi|254781095|r  178 QYRSSEITK----DLIITHVVLRGFPESQNIIS  206 (318)
Q Consensus       178 ~YR~S~~~~----~~iIl~a~l~l~~~~~~~i~  206 (318)
                      .|+++.+..    ..||++++|++.|..+..++
T Consensus        89 ~~l~~~~~g~~G~~GiIt~~tl~l~p~~~~~i~  121 (124)
T 3i99_A           89 GYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQ  121 (124)
T ss_dssp             BTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCC
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHH
T ss_conf             565565554456633789999864467750222


No 19 
>>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:1-99,A:305-326)
Probab=99.16  E-value=1.4e-10  Score=86.68  Aligned_cols=82  Identities=32%  Similarity=0.595  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHCC-EEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHH
Q ss_conf             999999875066-2775488001522576614889999689899999999856-29989998475203660488402202
Q gi|254781095|r    8 RLLRERGKQLRG-KFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVL   85 (318)
Q Consensus         8 ~~l~~~~~~~~g-~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI   85 (318)
                      ..+.++...+.+ .+..+.++++|+++++||.++.+++|++.+|+.+++++|. +++|+.+.|+|||+.+.+.+.+|+||
T Consensus        17 ~~~~~L~~~l~~~~i~~d~~l~~~~t~~~~~~p~avV~P~s~eeV~~iv~~a~~~~ipv~~rGgGts~~g~~~~~~g~VI   96 (121)
T 1hsk_A           17 DIYQALQQLIPNEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVI   96 (121)
T ss_dssp             HHHHHHHHHSCGGGEEEEEEGGGTCTTSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTTCEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEECCCCCCCCEEEECCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEEEEEE
T ss_conf             99999997685355880797653645003819789997699999999999998759988998584369996698669999


Q ss_pred             HHCC
Q ss_conf             2112
Q gi|254781095|r   86 RLSN   89 (318)
Q Consensus        86 ~l~~   89 (318)
                      .++.
T Consensus        97 ~ls~  100 (121)
T 1hsk_A           97 SLLL  100 (121)
T ss_dssp             ECTC
T ss_pred             EECC
T ss_conf             8322


No 20 
>>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (C:1-176)
Probab=98.93  E-value=6.1e-10  Score=82.72  Aligned_cols=156  Identities=11%  Similarity=0.117  Sum_probs=113.0

Q ss_pred             EEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECCC-EECCHHHHCCC-CCCCEEEECCCCCCCCCEEEHHH
Q ss_conf             48899996898999999998562998999847520366--0488-40220221123-44311330266512331122156
Q gi|254781095|r   38 NAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDAG-IRGVVLRLSNA-GFSNIEVRNHCEMIVGARCSGKS  113 (318)
Q Consensus        38 ~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~~-~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~~  113 (318)
                      +.-.|+.|.|.+|+.+++....  -...++++||.+..  .++. ..+.+|.++.- .+..++..++ .+++||++++.+
T Consensus         4 ~~~~~~~P~sl~e~~~ll~~~~--~~~~~vaGgT~l~~~~~~~~~~~~~~Idi~~i~eL~~i~~~~~-~l~iGA~vtl~~   80 (176)
T 1ffv_C            4 PRFEYHAPKSVGEAVALLGQLG--SDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS-TVVIGAMTVEND   80 (176)
T ss_dssp             CCCEEECCSSHHHHHHHHHHHG--GGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETT-EEEEETTCBHHH
T ss_pred             CCCCEECCCCHHHHHHHHHHHC--CCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-CEEEECCHHHHH
T ss_conf             9853669899999999998519--9988997375689987327789897998998715461687178-258602012566


Q ss_pred             HHHHHHHHHCCCH--HCCCCHHH-------HHHHHHCCCCCCCCCEEEEEEE--EEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             7777887520120--00387256-------6324311573215831345666--43441123210000123344310023
Q gi|254781095|r  114 LANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETSQYVV--EVHGIDRKGNQHVIPREQLKYQYRSS  182 (318)
Q Consensus       114 l~~~~~~~gl~Gl--E~l~gIPG-------TVGGAi~mNAGayG~ei~d~i~--~V~~~d~~g~~~~l~~~e~~f~YR~S  182 (318)
                      +.+.....+....  +.+..|.+       ||||.++|...+......-...  .|++.+.+ ..++++-+|+-.+||.+
T Consensus        81 l~~~~~~~~~~~~l~~~~~~ia~~~iRn~aTiGGNi~~~~~~sD~~~~l~al~A~v~i~~~~-g~r~v~~~df~~~~~~~  159 (176)
T 1ffv_C           81 LISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGPN-GRRTVPADGFFLGTYMT  159 (176)
T ss_dssp             HHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTTCSHHHHHHHTTCEEEEEETT-EEEEEESTTTEEETTEE
T ss_pred             HHCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEECCC-CCEEEEECCCCCCCCCC
T ss_conf             64183444455699999873288540777674485445775321788987521124531037-84598400012453223


Q ss_pred             CCCCCCCEEEEECCC
Q ss_conf             224676200100235
Q gi|254781095|r  183 EITKDLIITHVVLRG  197 (318)
Q Consensus       183 ~~~~~~iIl~a~l~l  197 (318)
                      .++.+.+++++.+..
T Consensus       160 ~l~~~eii~~v~iP~  174 (176)
T 1ffv_C          160 LLEENEVMVEIRVPA  174 (176)
T ss_dssp             SCCTTCEEEEEEEEC
T ss_pred             CCCCCCEEEEEECCC
T ss_conf             000163338999146


No 21 
>>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:96-211,A:452-503)
Probab=98.83  E-value=3.4e-09  Score=78.02  Aligned_cols=110  Identities=10%  Similarity=0.039  Sum_probs=87.2

Q ss_pred             CCCEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCC----CEEEEEEEEEEEECCCCCE
Q ss_conf             431133026651233112215677778875201200038725663243115732158----3134566643441123210
Q gi|254781095|r   92 FSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANN----CETSQYVVEVHGIDRKGNQ  167 (318)
Q Consensus        92 ~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG----~ei~d~i~~V~~~d~~g~~  167 (318)
                      |+.|+.+++..++|+||+.|.++.+++.++||.=.-.-+.-+.|+||++.++++.++    +.++|.+.++++++++|++
T Consensus         2 Mn~I~iD~~~~v~VeaGvt~~eL~~~L~~~Gl~l~~~ps~~~~TvGG~ia~gg~G~~s~~yG~~~D~V~~leVV~~dGei   81 (168)
T 1zr6_A            2 MYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASI   81 (168)
T ss_dssp             CCCEEECTTSCEEEETTCBHHHHHHHHHHTTSEECCCCSCTTSBHHHHHHHCCCSTTHHHHCCGGGGEEEEEEECTTSCE
T ss_pred             CCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCE
T ss_conf             89879888986797244329999999998639867874678866551221365432224554411120147887168868


Q ss_pred             EEEC---CCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             0001---2334431002322467620010023545654
Q gi|254781095|r  168 HVIP---REQLKYQYRSSEITKDLIITHVVLRGFPESQ  202 (318)
Q Consensus       168 ~~l~---~~e~~f~YR~S~~~~~~iIl~a~l~l~~~~~  202 (318)
                      .+.+   ..|+.+.+|.| +..-.||++++|++.|...
T Consensus        82 ~~~~~~~~~DL~~a~~Gs-~G~LGIIT~vtLkl~P~~~  118 (168)
T 1zr6_A           82 VHVSETENADLFWALRGG-GGGFAIVSEFEFNTFEAGN  118 (168)
T ss_dssp             EEEBTTBSHHHHHHHTTC-CSSSCEEEEEEECCEECGG
T ss_pred             EEECCCCCHHHHHHHHHH-HCCCCCEEEEEEEEECCHH
T ss_conf             996699886689998764-3005512899999761778


No 22 
>>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:116-238,A:483-524)
Probab=98.39  E-value=7.4e-08  Score=69.53  Aligned_cols=137  Identities=10%  Similarity=0.072  Sum_probs=92.9

Q ss_pred             CCEEEEC-CCCCCCCCEEEHHHHHHHHHHH-HCCCHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCC
Q ss_conf             3113302-6651233112215677778875-2012000387256632431157321-----5831345666434411232
Q gi|254781095|r   93 SNIEVRN-HCEMIVGARCSGKSLANSALRH-GIGGFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKG  165 (318)
Q Consensus        93 ~~i~~~~-~~~i~v~AG~~~~~l~~~~~~~-gl~GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g  165 (318)
                      +.++++. ...++|++|+.+.++.+++.++ ++.....-+.--.||||++.+|++.     ||. .+|++.++++++++|
T Consensus         8 ~ii~id~~~~~v~VeaGv~~~dl~~~ll~~~gl~~p~~~s~~~~TiGG~ia~g~~G~~s~~yG~-~~d~v~~levVl~dG   86 (165)
T 2exr_A            8 GYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGP-QTSNVTELDVVTGNG   86 (165)
T ss_dssp             EECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEECSCCCSCCSSBHHHHHTTCCCCTTHHHHCC-GGGSEEEEEEEETTS
T ss_pred             CCEEECCCCCEEEEECCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEECCCC
T ss_conf             6135428899899907959999999999849864678988786603322345422223332022-222135789984888


Q ss_pred             CEEEECCCC---CCCCCCCCCCCCCCCEEEEECCCCCCCC--CCCH----HHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf             100001233---4431002322467620010023545654--3100----1222100110001556670465889
Q gi|254781095|r  166 NQHVIPREQ---LKYQYRSSEITKDLIITHVVLRGFPESQ--NIIS----AAIANVCHHRETVQPIKEKTGGSTF  231 (318)
Q Consensus       166 ~~~~l~~~e---~~f~YR~S~~~~~~iIl~a~l~l~~~~~--~~i~----~~~~~~~~~R~~~qP~~~~s~GSvF  231 (318)
                      ++.+.++.+   +....|.| ...-.||++++|++.|.-+  ++-.    .+..++++.+....|...-+-|.-|
T Consensus        87 ~i~~~~~~~~~dlf~a~~Gs-~G~lGIIT~vtlrl~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (165)
T 2exr_A           87 DVVTCSEIENSELFFSVLGG-LGQFGIITRARVLLQPAYKSQEEWIRHFGNRWSRFVDRKAXFDPXAILSPGQKI  160 (165)
T ss_dssp             CEEEEESSSSHHHHHHHTTC-TTSSEEEEEEEEEEEECCCSHHHHHHHHGGGHHHHHHHHHHHCTTCCBCGGGCS
T ss_pred             CEEEEECCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             67999644443322332246-674422147887223684587999998889999999999976953368999887


No 23 
>>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (C:1-174)
Probab=98.39  E-value=6.9e-08  Score=69.72  Aligned_cols=155  Identities=12%  Similarity=0.071  Sum_probs=105.8

Q ss_pred             EEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CCC-EECCHHHHCCC-CCCCEEEECCCCCCCCCEEEHHH
Q ss_conf             488999968989999999985629989998475203660--488-40220221123-44311330266512331122156
Q gi|254781095|r   38 NAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DAG-IRGVVLRLSNA-GFSNIEVRNHCEMIVGARCSGKS  113 (318)
Q Consensus        38 ~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~~-~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~~  113 (318)
                      ++..|+.|.|.+|+.+++...+   ...++++|+.+.+.  ++. ....+|.+..- .+..++..++ .+++||++++.+
T Consensus         4 ~~~~~~~P~sl~ea~~ll~~~~---~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~i~~~~~-~l~iGA~vtl~~   79 (174)
T 1t3q_C            4 PAFSYRAPASLQEVIQVLADDP---DARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAG-ILSVGAMVTHFR   79 (174)
T ss_dssp             CCCEEECCSSHHHHHHHHHHCT---TCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETT-EEEEETTCBHHH
T ss_pred             CCCEEECCCCHHHHHHHHHHCC---CCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-CEEECCCHHHHH
T ss_conf             8830548899999999997689---987998673799998548789986888667755630675388-445323201567


Q ss_pred             HHHHHH-HHHCCCHHCC-CCHH-------HHHHHHHCCCCCCCCCEEEEEE--EEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             777788-7520120003-8725-------6632431157321583134566--643441123210000123344310023
Q gi|254781095|r  114 LANSAL-RHGIGGFHFF-YGIP-------GSIGGAAYMNAGANNCETSQYV--VEVHGIDRKGNQHVIPREQLKYQYRSS  182 (318)
Q Consensus       114 l~~~~~-~~gl~GlE~l-~gIP-------GTVGGAi~mNAGayG~ei~d~i--~~V~~~d~~g~~~~l~~~e~~f~YR~S  182 (318)
                      +..... ...+..|..+ ..|.       |||||.++++..+...-..-..  -.|++...+| .++++-+|+-.+|+.+
T Consensus        80 l~~~~~~~~~~~~L~~~~~~ia~~~iRn~aTiGGni~~~~~~sD~~~~l~al~A~v~i~~~~g-~r~i~l~df~~~~~~~  158 (174)
T 1t3q_C           80 NKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAG-VRSVSATDFMKGHYFT  158 (174)
T ss_dssp             HHHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTCTTCHHHHHHHHTTCEEEEEETTE-EEEEEHHHHEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEHHHCCCCCCCC
T ss_conf             664144443554899998741895316999844641113433236789998777774035643-1244101125675334


Q ss_pred             CCCCCCCEEEEECCC
Q ss_conf             224676200100235
Q gi|254781095|r  183 EITKDLIITHVVLRG  197 (318)
Q Consensus       183 ~~~~~~iIl~a~l~l  197 (318)
                      .++.+.+++++.+..
T Consensus       159 ~l~~~eii~~i~iP~  173 (174)
T 1t3q_C          159 DLEAGEVLVRVEIPI  173 (174)
T ss_dssp             SCCTTCEEEEEEEEC
T ss_pred             CCCCCCEEEEEEEEE
T ss_conf             234663379999987


No 24 
>>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:194-315,A:549-584)
Probab=98.15  E-value=1.8e-06  Score=60.81  Aligned_cols=129  Identities=15%  Similarity=0.062  Sum_probs=85.3

Q ss_pred             EEE-CCCCCCCCCEEEHHHHHHHHHHHHCC-CHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEE
Q ss_conf             330-26651233112215677778875201-2000387256632431157321-----5831345666434411232100
Q gi|254781095|r   96 EVR-NHCEMIVGARCSGKSLANSALRHGIG-GFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQH  168 (318)
Q Consensus        96 ~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~  168 (318)
                      +++ ++..++|++|+.+.++.+++.++|+. .....+.-..|+||++.+|+..     ||. .+|++.++++++++|++.
T Consensus         6 ~id~~~~~v~Ve~Gvt~~~l~~~l~~~Gl~~~~~~~~~~~~tigG~ia~~~~G~~s~~~G~-~~d~V~~~~iV~~dG~v~   84 (158)
T 2uuu_A            6 WVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGD-IEDMAVSFRTVTPTGTLE   84 (158)
T ss_dssp             EEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHHTCCCTTHHHHCC-HHHHEEEEEEEETTEEEC
T ss_pred             EECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECC-CCCCHHHCEEECCCCCEE
T ss_conf             9848889899965048999999999829946788776555652047433788788225436-554543405888899866


Q ss_pred             EECCC------CCCCCCCCCCCCCCCCEEEEECCCCCCCCCC------CHHHHHHCCCCCCCCCCCCCEE
Q ss_conf             00123------3443100232246762001002354565431------0012221001100015566704
Q gi|254781095|r  169 VIPRE------QLKYQYRSSEITKDLIITHVVLRGFPESQNI------ISAAIANVCHHRETVQPIKEKT  226 (318)
Q Consensus       169 ~l~~~------e~~f~YR~S~~~~~~iIl~a~l~l~~~~~~~------i~~~~~~~~~~R~~~qP~~~~s  226 (318)
                      +.++.      |+.+.-|.| ..--.||+++++++.|..+..      -++.++-..+.+..-.|.+.-|
T Consensus        85 ~~~~~~~~~~~dL~~a~~Gs-~G~lGIVt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~k~~~dp~~~~n  153 (158)
T 2uuu_A           85 LRNGARSGAGINYKHIILGS-EGTLGIITEAVMKVHAVPHVPWMTRYATRGWINVYRSLKETIDPKDICN  153 (158)
T ss_dssp             CC-------CCCTHHHHTTC-TTSSCEEEEEEEECEECC----------CTHHHHHHHHHHHHCTTCCBS
T ss_pred             ECCCCCCCCCCCHHHHHHCC-CCCCEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             30444567997878876426-6562799873110101347999998669999999999999849763789


No 25 
>>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:113-241)
Probab=98.09  E-value=5e-06  Score=57.99  Aligned_cols=104  Identities=8%  Similarity=-0.046  Sum_probs=71.9

Q ss_pred             EEEE-CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCC-CCHHHHHHHHHCCCCC-----CCCCEEEEEEEEEEEECCCCCE
Q ss_conf             1330-2665123311221567777887520120003-8725663243115732-----1583134566643441123210
Q gi|254781095|r   95 IEVR-NHCEMIVGARCSGKSLANSALRHGIGGFHFF-YGIPGSIGGAAYMNAG-----ANNCETSQYVVEVHGIDRKGNQ  167 (318)
Q Consensus        95 i~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l-~gIPGTVGGAi~mNAG-----ayG~ei~d~i~~V~~~d~~g~~  167 (318)
                      ++++ +...++|+||+.|.+|.+++.++|+. +-.. +.=.+||||++.+|+.     .||. +.|.|.++++++++|++
T Consensus         4 i~id~~~~~v~v~~Gv~~~~l~~~l~~~gl~-~~~~~~~~~~tvgG~~~~~~~G~~~~~~G~-~~d~v~~~~vV~~~G~~   81 (129)
T 1wvf_A            4 IKIDPEMCYALVEPGVTFGQMYDYIQENNLP-VMLSFSAPSAIAGPVGNTMDRGVGYTPYGE-HFMMQCGMEVVLANGDV   81 (129)
T ss_dssp             EEEETTTTEEEECTTCCHHHHHHHHHHTTCS-EECCCCSSCTTCCHHHHHHTTCBCSSTTCB-GGGGEEEEEEECTTSCE
T ss_pred             CCCCCCCCEEEECHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf             4358766647743001046654344421465-445766541353043110001233323343-34356763230245421


Q ss_pred             EEECCCCCCC--------CCCCCC--C----CCCCCEEEEECCCCCC
Q ss_conf             0001233443--------100232--2----4676200100235456
Q gi|254781095|r  168 HVIPREQLKY--------QYRSSE--I----TKDLIITHVVLRGFPE  200 (318)
Q Consensus       168 ~~l~~~e~~f--------~YR~S~--~----~~~~iIl~a~l~l~~~  200 (318)
                      .+.++....-        .-|.-.  +    -.--||+++++++.|.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~g~~G~lGiit~~tl~~~p~  128 (129)
T 1wvf_A           82 YRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPK  128 (129)
T ss_dssp             EECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCC
T ss_conf             11387545565322200124662244310368554300021136678


No 26 
>>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} (A:1-114)
Probab=98.04  E-value=3.3e-06  Score=59.07  Aligned_cols=101  Identities=16%  Similarity=0.006  Sum_probs=72.5

Q ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC-----
Q ss_conf             266512331122156777788752012000387256632431157321583134566643441123210000123-----
Q gi|254781095|r   99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPRE-----  173 (318)
Q Consensus        99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~-----  173 (318)
                      +...++|++|+.+.+|.+++.++||.=--..+..+|++||+.....+.......|++.++++++++|++....+.     
T Consensus         6 ~~~~v~v~~Gv~~~~l~~~l~~~G~~~~~~~~~~~g~i~g~~~g~~~~~~g~~~~~v~~~~~v~~~g~v~~~~~~~~~~~   85 (114)
T 2yvs_A            6 ADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPGGVGGLVARGGFAQTFFFPAEVLGLTFRTPKGRRVRAGGVVVKNV   85 (114)
T ss_dssp             TTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTTHHHHHHHTTCSSBSSCGGGGEEEEEEECTTSCEEEEECSSCSSS
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCC
T ss_conf             57989998998699999999977981288965466622355325776333662306989999991697678455332220


Q ss_pred             ---CCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             ---344310023224676200100235456
Q gi|254781095|r  174 ---QLKYQYRSSEITKDLIITHVVLRGFPE  200 (318)
Q Consensus       174 ---e~~f~YR~S~~~~~~iIl~a~l~l~~~  200 (318)
                         |+.+..+.|. ..--||+++++++.|.
T Consensus        86 ~~~dl~~a~~Gs~-G~lGiit~~~l~~~PA  114 (114)
T 2yvs_A           86 QGYDLVRLFVGSF-GLLGRAEEVVLRLRPG  114 (114)
T ss_dssp             SCSCHHHHHTTCT-TTTCEEEEEEEECEEC
T ss_pred             HHHHHHHHHCCCC-CCEEEEEEEEEEEEEC
T ss_conf             0445566410677-7359999999998607


No 27 
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:224-272)
Probab=98.02  E-value=7.5e-07  Score=63.18  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEEEECCC--------------------------CCCCHHHHHHCCC
Q ss_conf             4658897278--------------------------9851000263186
Q gi|254781095|r  226 TGGSTFKNPT--------------------------GHSAWQLIEKSGC  248 (318)
Q Consensus       226 s~GSvFkNP~--------------------------~~~A~~LIe~~Gl  248 (318)
                      |||||||||.                          ..+|+||||+|||
T Consensus         1 NaGSFFkNPiv~~~~~~~L~~~~p~~p~y~~~~g~~Kl~AaWLIe~~GL   49 (49)
T 1uxy_A            1 NAGAFFKNPVVSAETAKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQL   49 (49)
T ss_dssp             EEEESBCCCEECHHHHHHHHHHSTTCCEEECTTSCEEECHHHHHHHTTC
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             7644553144317799998875777887411366425259999998464


No 28 
>>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:127-273)
Probab=98.00  E-value=9.4e-06  Score=56.24  Aligned_cols=84  Identities=10%  Similarity=-0.115  Sum_probs=60.9

Q ss_pred             EEEC-CCCCCCCCEEEHHHHHHHHHHHHCC-CHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEE
Q ss_conf             3302-6651233112215677778875201-2000387256632431157321-----5831345666434411232100
Q gi|254781095|r   96 EVRN-HCEMIVGARCSGKSLANSALRHGIG-GFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQH  168 (318)
Q Consensus        96 ~~~~-~~~i~v~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~  168 (318)
                      +++. ..+++|+||+.|.+|.+++.++|+. +...-+.-..||||.+.+|+..     ||. ..|.|.++++++++|++.
T Consensus         6 ~id~~~~~v~v~~Gv~~~~l~~~l~~~G~~~~~~~~~~~~~~vgG~~~~~~~g~~~~~~G~-~~d~v~~~~vV~~~G~~~   84 (147)
T 1e8g_A            6 EVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGD-HWMMHSGMEVVLANGELL   84 (147)
T ss_dssp             EEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHTTCBCSSTTCB-TGGGEEEEEEEETTSCEE
T ss_pred             EEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCEEEEEEEEECCCCEEE
T ss_conf             8837999999968825999999999848956889998840666876433147777666786-420577899990797799


Q ss_pred             EECCC---CCCCCCC
Q ss_conf             00123---3443100
Q gi|254781095|r  169 VIPRE---QLKYQYR  180 (318)
Q Consensus       169 ~l~~~---e~~f~YR  180 (318)
                      +.+++   |..+..|
T Consensus        85 ~~~~~~~~d~~~a~~   99 (147)
T 1e8g_A           85 RTGMGALPDPKRPET   99 (147)
T ss_dssp             ECGGGGSCCCCCGGG
T ss_pred             EECCCCCCCHHHHHC
T ss_conf             816865431233320


No 29 
>>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (B:1-216)
Probab=98.00  E-value=2.7e-05  Score=53.34  Aligned_cols=151  Identities=15%  Similarity=0.225  Sum_probs=95.8

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CC-CEECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHH
Q ss_conf             8999968989999999985629989998475203660--48-84022022112-34431133026651233112215677
Q gi|254781095|r   40 EVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DA-GIRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLA  115 (318)
Q Consensus        40 ~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~-~~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~  115 (318)
                      ..|+.|.|.+|+.+++    .+.|..++++|+.+...  .+ ..+..+|.+.+ ..+..++..++..++.||++.+.++.
T Consensus         7 ~~~~~P~sl~ea~~ll----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~I~eL~~i~~~~d~~l~IGA~vTl~~l~   82 (216)
T 1rm6_B            7 FRTHRPATLADAVNAL----AAEATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLEAIA   82 (216)
T ss_dssp             CEEECCSSHHHHHHHT----TSTTEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHHHHH
T ss_pred             CEEECCCCHHHHHHHH----CCCCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCEEEECCCCCHHHHH
T ss_conf             4586899999999986----289995997575689998458789997998667811160697467518970026314443


Q ss_pred             HHH-HHHHCCCH----HCCCCHH----HHHHHHHCCCCCCCCCEEEEEE-------------------------------
Q ss_conf             778-87520120----0038725----6632431157321583134566-------------------------------
Q gi|254781095|r  116 NSA-LRHGIGGF----HFFYGIP----GSIGGAAYMNAGANNCETSQYV-------------------------------  155 (318)
Q Consensus       116 ~~~-~~~gl~Gl----E~l~gIP----GTVGGAi~mNAGayG~ei~d~i-------------------------------  155 (318)
                      ... ....+..|    ...+..+    |||||.+++...+... ....+                               
T Consensus        83 ~~~~~~~~~p~L~~a~~~ia~~~IRn~aTiGGNl~~a~~~~d~-~~~L~al~a~v~~~~~~g~~~~~~~~~~~~~~~~~~  161 (216)
T 1rm6_B           83 EHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFY-NQSEWWRSGNGYCLKYKGDKCHVIVKSDRCYATYHG  161 (216)
T ss_dssp             HCHHHHHHSHHHHHHHHHSSCHHHHHHCBHHHHHTCCCBCTTT-SSCHHHHHHTTCBTTBBCSCCSSSTTCSSCCCBCCC
T ss_pred             HHHHCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCCCCCEEEECCCCCEEECCCC
T ss_conf             3210002428899998741896462333245214467770454-200102578873014578730342367640212455


Q ss_pred             ----------EEEEEECCCCCEEEECCCCCC--CCCCCCCCCCCCCEEEEECC
Q ss_conf             ----------643441123210000123344--31002322467620010023
Q gi|254781095|r  156 ----------VEVHGIDRKGNQHVIPREQLK--YQYRSSEITKDLIITHVVLR  196 (318)
Q Consensus       156 ----------~~V~~~d~~g~~~~l~~~e~~--f~YR~S~~~~~~iIl~a~l~  196 (318)
                                .++.+...+| .+++.-+|+-  -+||.+.++.+.+++++.+-
T Consensus       162 ~~~~~l~a~~a~~~v~~~~g-~r~i~~~~f~~~~G~~~t~L~~~eil~~i~iP  213 (216)
T 1rm6_B          162 DVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESGAEHLTLEKGELLAAIEVP  213 (216)
T ss_dssp             SHHHHHHHTTCEEEEEETTE-EEEEEGGGGBCSCTTSCBCCCTTCEEEEEEEC
T ss_pred             CHHHHHHHHCCEEEEECCCC-EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             33689997188999852872-06822200035652233545651279999996


No 30 
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:88-216)
Probab=97.63  E-value=3.3e-05  Score=52.78  Aligned_cols=101  Identities=12%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             EEEE-CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHH----------HHHCCCCC-----CCCCEEEEEEEEE
Q ss_conf             1330-266512331122156777788752012000387256632----------43115732-----1583134566643
Q gi|254781095|r   95 IEVR-NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIG----------GAAYMNAG-----ANNCETSQYVVEV  158 (318)
Q Consensus        95 i~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVG----------GAi~mNAG-----ayG~ei~d~i~~V  158 (318)
                      ++++ +...++|+||+.|.+|.+++.++||.=--.....+.|+|          |.+.+|+.     .||. ..|+|.++
T Consensus         6 i~id~~~~~v~v~aG~~~~~l~~~L~~~G~~~~~~~~~~~~t~gg~~~~~~~~~G~~~~~g~g~~~~~~G~-~~d~v~~~   84 (129)
T 3js8_A            6 IDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGS-ISNLVLSL   84 (129)
T ss_dssp             EECSSSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSC-GGGGEEEE
T ss_pred             ECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCCCCCCCCC-HHHCEEEE
T ss_conf             71667917999899989999999999828835677767861356875787307774799987766456475-74717889


Q ss_pred             EEECCCCCEEEECC---C----CCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             44112321000012---3----34431002322467620010023545
Q gi|254781095|r  159 HGIDRKGNQHVIPR---E----QLKYQYRSSEITKDLIITHVVLRGFP  199 (318)
Q Consensus       159 ~~~d~~g~~~~l~~---~----e~~f~YR~S~~~~~~iIl~a~l~l~~  199 (318)
                      ++++.+|++.++..   +    |+.+.-+..-   --||+++++++.|
T Consensus        85 ~vv~~~G~~~~~~~~~~~~~~~dl~~~~g~~g---lGIit~~tl~l~P  129 (129)
T 3js8_A           85 TAVVYDKASGAYALRKFARNDPQIAPLLAHVG---RSLIVEATLQAAP  129 (129)
T ss_dssp             EEEEEETTTTEEEEEEEETTSGGGHHHHTCTT---SSCEEEEEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCCCCHHHHHHHCCCC---CEEEEEEEEEEEC
T ss_conf             99964897126863777795688997514677---2357889999762


No 31 
>>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103)
Probab=97.18  E-value=0.00036  Score=46.24  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHC-CEEEECCC-CCCCC--CCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEE---EECC
Q ss_conf             999999987506-62775488-00152--2576614889999689899999999856-299899984752036---6048
Q gi|254781095|r    7 SRLLRERGKQLR-GKFQENFP-LKQIT--WFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNIL---VRDA   78 (318)
Q Consensus         7 ~~~l~~~~~~~~-g~i~~n~~-L~~~t--t~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil---~~D~   78 (318)
                      +..+.++...+. ..+..+.+ ++.|+  +....+.+..++.|+|.+|+.+++++|. +++|+.+.|+|+|+-   ++++
T Consensus        10 ~~~~~~L~~~~~~~~v~~d~~~~~~~~~~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~ipv~~rggGts~~g~~~~~~   89 (103)
T 1f0x_A           10 KAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNG   89 (103)
T ss_dssp             HHHHHHHHHHHCGGGEECCHHHHHHHHBCSSSCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCCB
T ss_pred             HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             99999999860976288388899887076544677876799509999999999999987982999789967777854688


Q ss_pred             C---EECCHHHHC
Q ss_conf             8---402202211
Q gi|254781095|r   79 G---IRGVVLRLS   88 (318)
Q Consensus        79 ~---~~G~vI~l~   88 (318)
                      +   .++++|.|+
T Consensus        90 gg~~~~~ividl~  102 (103)
T 1f0x_A           90 NDYDRDVVIISTL  102 (103)
T ss_dssp             SCCSSCEEEEECT
T ss_pred             CCCCCCEEEEECH
T ss_conf             8887878999864


No 32 
>>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:1-112)
Probab=97.02  E-value=0.00069  Score=44.44  Aligned_cols=86  Identities=13%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHCC-EEEECCC-CCCCC----C-CCCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEE
Q ss_conf             7999999999875066-2775488-00152----2-57661488999968989999999985-62998999847520366
Q gi|254781095|r    4 GRISRLLRERGKQLRG-KFQENFP-LKQIT----W-FRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILV   75 (318)
Q Consensus         4 ~~~~~~l~~~~~~~~g-~i~~n~~-L~~~t----t-~rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~   75 (318)
                      ...+..+.++...+.. .+..+.+ +..|+    | ....+....++.|.|.+|+.+++++| ++++|+.+.|+|+|+--
T Consensus        15 ~~~~~~~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~pv~~rggG~~~~g   94 (112)
T 1wvf_A           15 GEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGY   94 (112)
T ss_dssp             HHHHHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             99999999999863976487589999876255421246788887799569899999999999987980999899988778


Q ss_pred             ---ECCCEECCHHHHCC
Q ss_conf             ---04884022022112
Q gi|254781095|r   76 ---RDAGIRGVVLRLSN   89 (318)
Q Consensus        76 ---~D~~~~G~vI~l~~   89 (318)
                         +...-+|++|.+++
T Consensus        95 ~s~~~~~~~givIdl~~  111 (112)
T 1wvf_A           95 GSAAPVQRGQVILDLKK  111 (112)
T ss_dssp             TTTSCSSTTCEEEECTT
T ss_pred             CCCCCCCCCEEEEECHH
T ss_conf             88757779989998244


No 33 
>>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:77-193)
Probab=97.02  E-value=0.0003  Score=46.73  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             CCCCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEEEC-CCEECCHHHHCCCC
Q ss_conf             257661488999968989999999985-6299899984752036604-88402202211234
Q gi|254781095|r   32 WFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRD-AGIRGVVLRLSNAG   91 (318)
Q Consensus        32 t~rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~~D-~~~~G~vI~l~~~~   91 (318)
                      +.+..+....+++|+|.+|+..++++| ++++|+.+.|+|+|+.-.- ...+|++|.+++++
T Consensus        55 ~~~~~~~P~~vv~P~s~~eV~~iv~~a~~~~ipv~~rggG~~~~g~~~~~~~gi~idl~~mn  116 (117)
T 2uuu_A           55 IGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMR  116 (117)
T ss_dssp             TTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCSSCTTSCCCCSSCEEEEECT
T ss_pred             CCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             79878998589954999999999999998799689848998888875116898459999867


No 34 
>>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:1-126)
Probab=96.69  E-value=0.0014  Score=42.55  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             CCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEE---CCCEECCHHHHCC
Q ss_conf             576614889999689899999999856-29989998475203660---4884022022112
Q gi|254781095|r   33 FRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVR---DAGIRGVVLRLSN   89 (318)
Q Consensus        33 ~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~---D~~~~G~vI~l~~   89 (318)
                      .+.......++.|++.+|+++++++|. +++|+.+.|+|+++--.   ..-.+|++|.+++
T Consensus        65 ~~~~~~P~aVv~P~~~~eV~~ivk~a~~~~i~v~~rggG~~~~g~~~~~~~~~giviDlsR  125 (126)
T 1e8g_A           65 DQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGK  125 (126)
T ss_dssp             CTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTCCSSTTCEEEECTT
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             6656688789966999999999999998799389977998878888741579969998722


No 35 
>>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:1-115)
Probab=96.59  E-value=0.0026  Score=40.84  Aligned_cols=82  Identities=11%  Similarity=-0.008  Sum_probs=54.3

Q ss_pred             HHHHHHHHHCC-EEEEC-CCCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHH-HC-CCCEEEECCCCEEEEECCCEE
Q ss_conf             99999875066-27754-88001522---57661488999968989999999985-62-998999847520366048840
Q gi|254781095|r    9 LLRERGKQLRG-KFQEN-FPLKQITW---FRTGGNAEVMFQPQDIHDLKYFLTLL-PS-DIPITIVGLGSNILVRDAGIR   81 (318)
Q Consensus         9 ~l~~~~~~~~g-~i~~n-~~L~~~tt---~rvGG~A~~~~~p~s~~el~~~l~~~-~~-~~p~~iiG~GSNil~~D~~~~   81 (318)
                      .+.++...+.. .+..+ ..+..+++   ....+....++.|++.+|+++++++| +. ++|+.+.|+|+++--.-...+
T Consensus        27 ~~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~~~~eV~~~v~~~~~~~~i~i~~rggGh~~~G~s~~~~  106 (115)
T 2exr_A           27 TDGVSESLNIQGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEG  106 (115)
T ss_dssp             -------CCCSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTTCCTT
T ss_pred             HHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             23357653777616448878888654757865135257996199999999999999728904999879807888766898


Q ss_pred             CCHHHHCCC
Q ss_conf             220221123
Q gi|254781095|r   82 GVVLRLSNA   90 (318)
Q Consensus        82 G~vI~l~~~   90 (318)
                      |++|.++++
T Consensus       107 gvvidl~rM  115 (115)
T 2exr_A          107 GLVVDXSTT  115 (115)
T ss_dssp             SEEEEGGGG
T ss_pred             EEEEECHHH
T ss_conf             799988122


No 36 
>>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:1-95)
Probab=96.55  E-value=0.0019  Score=41.62  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEE--CCCEECCHHHHC
Q ss_conf             76614889999689899999999856-29989998475203660--488402202211
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVR--DAGIRGVVLRLS   88 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~--D~~~~G~vI~l~   88 (318)
                      ........++.|+|.+|+.+++++|. +++|+.+.|+|+++--.  ....+|++|.|+
T Consensus        38 ~~~~~P~~Vv~P~s~~eV~~vv~~~~~~~i~v~~rggG~s~~g~~~~~~~~~vvidls   95 (95)
T 1zr6_A           38 RVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELD   95 (95)
T ss_dssp             GGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTSSSSCEEEECT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECC
T ss_conf             5589950899649899999999999987975999869978888856688998999974


No 37 
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87)
Probab=95.69  E-value=0.013  Score=36.38  Aligned_cols=40  Identities=8%  Similarity=0.042  Sum_probs=35.0

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEE
Q ss_conf             76614889999689899999999856-29989998475203
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNI   73 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNi   73 (318)
                      ........++.|.|++|+++++++|. +++|+.+.|+|++.
T Consensus        25 ~~~~~P~~vv~P~s~~eV~~iv~~a~~~~~~v~~rggGhs~   65 (87)
T 3js8_A           25 DIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNW   65 (87)
T ss_dssp             CCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             85568888994699999999999999879809998999677


No 38 
>>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* (A:168-245,A:303-344)
Probab=94.20  E-value=0.051  Score=32.61  Aligned_cols=108  Identities=18%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             CCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE---CCCEECCHHHHCCC-CCCCEEEECCCCCCCCCEEE
Q ss_conf             661488999968989999999985629989998475203660---48840220221123-44311330266512331122
Q gi|254781095|r   35 TGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR---DAGIRGVVLRLSNA-GFSNIEVRNHCEMIVGARCS  110 (318)
Q Consensus        35 vGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~---D~~~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~  110 (318)
                      +.+....|+.|.|.+|+.+++...+   ...++++|+++++.   ..-.+..+|.+++- .++.++..++ .++.||.. 
T Consensus         6 ~~~~~~~~~~P~sl~Eal~ll~~~~---~a~~iaGgTdl~~~~k~~~~~~~~lIdi~~I~eL~~I~~~~~-~l~IGAA~-   80 (120)
T 2w3s_A            6 VRGQTAPAFLPETSDALADWYLAHP---EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPD-GYGIGAAS-   80 (120)
T ss_dssp             ------CCBCCSSHHHHHHHHHHCT---TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCEEEETT-EEEEETCE-
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEECCC-EEEECHCE-
T ss_conf             4689866527889999999987589---857995471575422014467861587504341016998499-08973437-


Q ss_pred             HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             15677778875201200038725663243115732158313456664344112321000012334431002322467620
Q gi|254781095|r  111 GKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLII  190 (318)
Q Consensus       111 ~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~YR~S~~~~~~iI  190 (318)
                                                                     |++-.++ ..+.++-+|+.-+||.+.++++.+|
T Consensus        81 -----------------------------------------------~~l~~~~-g~R~vp~~dF~~g~~~t~l~~~E~i  112 (120)
T 2w3s_A           81 -----------------------------------------------LTLRRGQ-ERRRMPLEDFFLEYRKQDRRPGEFV  112 (120)
T ss_dssp             -----------------------------------------------EEEEBTT-BCCCCBGGGGEEETTEESCCTTCEE
T ss_pred             -----------------------------------------------EEEEECC-CEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             -----------------------------------------------9998057-6089730112457411014777556


Q ss_pred             EEEEC
Q ss_conf             01002
Q gi|254781095|r  191 THVVL  195 (318)
Q Consensus       191 l~a~l  195 (318)
                      .++.+
T Consensus       113 ~~i~i  117 (120)
T 2w3s_A          113 ESVTL  117 (120)
T ss_dssp             EEEEE
T ss_pred             EEEEC
T ss_conf             77631


No 39 
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:285-540,A:1311-1332)
Probab=94.03  E-value=0.1  Score=30.77  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             CCCEEEECCCCCCCCCEEEHHHHHHHHHHHH----------CCC----HHCCCCHH----HHHHHHHCCCCCCCCCEEEE
Q ss_conf             4311330266512331122156777788752----------012----00038725----66324311573215831345
Q gi|254781095|r   92 FSNIEVRNHCEMIVGARCSGKSLANSALRHG----------IGG----FHFFYGIP----GSIGGAAYMNAGANNCETSQ  153 (318)
Q Consensus        92 ~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~g----------l~G----lE~l~gIP----GTVGGAi~mNAGayG~ei~d  153 (318)
                      ++.|+..++ .++.||++.+.++........          +..    +...++-+    |||||.++....+...-..-
T Consensus         3 L~~I~~~~~-~l~IGA~vT~~~l~~~~~~~~~~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~a~p~~D~~~~L   81 (278)
T 1v97_A            3 LNAVEHGPE-GISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVF   81 (278)
T ss_dssp             GTCEEECSS-EEEEETTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHTTCBHHHHHHHCCTTCSSHHHH
T ss_pred             HHCEEECCC-EEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCEECCCCCCCCCHHH
T ss_conf             725896699-7999356939999999999876445033456799999999855576514302101011068764203667


Q ss_pred             EE--EEEEEECCCCCEEEEC-CCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             66--6434411232100001-23344310023224676200100235456
Q gi|254781095|r  154 YV--VEVHGIDRKGNQHVIP-REQLKYQYRSSEITKDLIITHVVLRGFPE  200 (318)
Q Consensus       154 ~i--~~V~~~d~~g~~~~l~-~~e~~f~YR~S~~~~~~iIl~a~l~l~~~  200 (318)
                      ..  -.|++...+| .++++ .+++.-+|+.+.++.+.+|+++.+...+.
T Consensus        82 lAl~A~v~i~~~~G-~R~i~~~e~f~~g~~~t~L~~~EiI~~I~iP~~~~  130 (278)
T 1v97_A           82 MASGTKLTIVSRGT-RRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSRE  130 (278)
T ss_dssp             HHTTCEEEEEETTE-EEEEECCGGGCCSTTCCSCCTTCEEEEEEEECCCT
T ss_pred             HHCCCEEEEEECCC-EEEEECHHHHHCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             53487899970797-49986346442144333578885599998568987


No 40 
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276)
Probab=92.67  E-value=0.027  Score=34.34  Aligned_cols=12  Identities=50%  Similarity=0.681  Sum_probs=9.9

Q ss_pred             EEEEEEECCCCC
Q ss_conf             465889727898
Q gi|254781095|r  226 TGGSTFKNPTGH  237 (318)
Q Consensus       226 s~GSvFkNP~~~  237 (318)
                      |||||||||.-.
T Consensus         1 NaGSFFKNPiV~   12 (38)
T 3i99_A            1 NAGSFFKNPVIS   12 (38)
T ss_dssp             EEEESBCCCEEC
T ss_pred             CCCEEECCCCCH
T ss_conf             766031255423


No 41 
>>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} (A:)
Probab=75.65  E-value=3.1  Score=21.39  Aligned_cols=56  Identities=13%  Similarity=0.115  Sum_probs=43.3

Q ss_pred             CCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH
Q ss_conf             522576614889999689899999999856-29989998--------475203660488402202
Q gi|254781095|r   30 ITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL   85 (318)
Q Consensus        30 ~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI   85 (318)
                      +.+|.-.|.++......|+++|.++.+.++ .++|..++        -.||++.+.-++++--.|
T Consensus        43 ~~~W~~~g~~Kvvlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~gs~TvlaigP~p~~~i  107 (117)
T 1rlk_A           43 FNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKL  107 (117)
T ss_dssp             HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCSSSSSCCCEEEEEEEEEEHHHH
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf             99998589916899519989999999999987998899987997606999879999787888888


No 42 
>>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Pyrococcus horikoshii OT3} PDB: 2d3k_A (A:)
Probab=73.36  E-value=5.9  Score=19.57  Aligned_cols=57  Identities=9%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             CCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEEC--------CCCEEEEECCCEECCHH
Q ss_conf             1522576614889999689899999999856-299899984--------75203660488402202
Q gi|254781095|r   29 QITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVG--------LGSNILVRDAGIRGVVL   85 (318)
Q Consensus        29 ~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG--------~GSNil~~D~~~~G~vI   85 (318)
                      -+-+|...|.++......|+++|.++.+.++ .++|+.++=        .||.+++.-++.+--.|
T Consensus        46 ~~~~W~~~g~~Kvvlkv~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~TvlaigP~p~~~i  111 (121)
T 1wn2_A           46 WFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIV  111 (121)
T ss_dssp             HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCTTCEEEEEEEEEEHHHH
T ss_pred             HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCEEEEEECCCCHHHH
T ss_conf             999999789917999739989999999999987997899986898671999868999787888888


No 43 
>>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} (A:)
Probab=72.90  E-value=5.2  Score=19.94  Aligned_cols=57  Identities=7%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             CCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEEC--------CCCEEEEECCCEECCHHH
Q ss_conf             522576614889999689899999999856-299899984--------752036604884022022
Q gi|254781095|r   30 ITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVG--------LGSNILVRDAGIRGVVLR   86 (318)
Q Consensus        30 ~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG--------~GSNil~~D~~~~G~vI~   86 (318)
                      +.+|.-.|.++......|+++|.++.+.++ .++|..++=        .||.+++.-++.+--.|.
T Consensus        46 ~~~W~~~g~~Kivlk~~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tev~~gs~TviaigP~p~~~i~  111 (120)
T 1xty_A           46 LNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVD  111 (120)
T ss_dssp             HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHH
T ss_pred             HHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf             999986797589998399999999999999879988999849976439998689997878888988


No 44 
>>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} (A:)
Probab=64.12  E-value=8  Score=18.74  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH
Q ss_conf             01522576614889999689899999999856-29989998--------475203660488402202
Q gi|254781095|r   28 KQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL   85 (318)
Q Consensus        28 ~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI   85 (318)
                      .-+.+|...|.++......|+++|.++.+.++ .++|..++        -.||.+++.-++++--.|
T Consensus        39 ~~~~~W~~~g~~Kivl~~~~e~~l~~l~~~a~~~gl~~~~i~DAG~TEi~~gt~TvlaigP~p~~~i  105 (115)
T 2zv3_A           39 RAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKI  105 (115)
T ss_dssp             HHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC-------EEEEEEEEEECHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf             9999998689917999639999999999999887995899981997513999878999898887898


No 45 
>>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} (A:)
Probab=63.51  E-value=10  Score=18.12  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=41.8

Q ss_pred             CCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH
Q ss_conf             1522576614889999689899999999856-29989998--------475203660488402202
Q gi|254781095|r   29 QITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL   85 (318)
Q Consensus        29 ~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI   85 (318)
                      -+-.|.-.|.++......|+++|.++.+.++ .++|..++        -.||++++.-++++--.|
T Consensus        42 ~~~~W~~~g~~KvvLkv~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tei~~gt~TvlaigP~p~~~i  107 (117)
T 1q7s_A           42 MLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLI  107 (117)
T ss_dssp             HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf             999998689917999509999999999999987997899986997403999858999787887898


No 46 
>>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} (A:1-10,A:249-352)
Probab=59.87  E-value=12  Score=17.62  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=56.4

Q ss_pred             CCEEE-EEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             67046-588972789851000263186882066778715677089968-9979999999999999999998475
Q gi|254781095|r  223 KEKTG-GSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINA-DNATGYDLEYLGEQVRKKVFNQSGI  294 (318)
Q Consensus       223 ~~~s~-GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~-g~ata~di~~Li~~v~~~V~~~~gi  294 (318)
                      ..+|. =..|+.|.+..+..+.+.+-=+|..+.+-+.+-++.-|=|+. |.-+.+|+..+++.+++. .++.|+
T Consensus        40 ~~~s~~vt~v~~p~gi~~~~~~~~L~~~gi~I~~g~g~~~~~~fRIg~mG~~~~edi~~~l~al~~~-L~~lg~  112 (114)
T 1iug_A           40 KRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREV-LEEILP  112 (114)
T ss_dssp             SSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHH-HHHHC-
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf             3469946999799999999999999977929976773137968988689999999999999999999-999727


No 47 
>>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* (A:1-17,A:252-353)
Probab=53.62  E-value=15  Score=16.97  Aligned_cols=65  Identities=11%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             EEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEC-C-CCCHHHHHHHHHHHHHHHH
Q ss_conf             046588972789851000263186882066778715677089968-9-9799999999999999999
Q gi|254781095|r  225 KTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINA-D-NATGYDLEYLGEQVRKKVF  289 (318)
Q Consensus       225 ~s~GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~-g-~ata~di~~Li~~v~~~V~  289 (318)
                      .+.=..|..|.+..+..+.+.+-=+|+.+.+-+-+-++.-|=|.. | +++..|+..+++-+.+...
T Consensus        51 S~~VTav~~P~gid~~~l~~~L~e~gi~I~~G~g~l~~~~fRIghMG~~i~~~di~~~l~aL~~aL~  117 (119)
T 2yrr_A           51 LPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA  117 (119)
T ss_dssp             CTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9869999799998999999999978919990664325999998288588989999999999999983


No 48 
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:223-284)
Probab=53.25  E-value=4.4  Score=20.39  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=28.8

Q ss_pred             CCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE
Q ss_conf             25766148899996898999999998562998999847520366
Q gi|254781095|r   32 WFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV   75 (318)
Q Consensus        32 t~rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~   75 (318)
                      ++.+++.-.-|+.|.|.+|+.+++.....   -.++.||+.+.+
T Consensus         4 ~~~~~~~~~~~~~P~tl~el~~ll~~~P~---A~iiaGgTdl~~   44 (62)
T 1v97_A            4 QLRFEGERVTWIQASTLKELLDLKAQHPE---AKLVVGNTEIGI   44 (62)
T ss_dssp             CEEEECSSCEEEECCSHHHHHHHHHHCTT---CEECSSCTTHHH
T ss_pred             CEEECCCCEEEECCCCHHHHHHHHHHCCC---CEEEEECCHHHH
T ss_conf             14753886057578979999999987899---879997464775


No 49 
>>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} (A:)
Probab=47.00  E-value=19  Score=16.32  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=43.7

Q ss_pred             CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHHH
Q ss_conf             01522576614889999689899999999856-29989998--------4752036604884022022
Q gi|254781095|r   28 KQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVLR   86 (318)
Q Consensus        28 ~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI~   86 (318)
                      ..+.+|+-.|.++......|+++|.++.+.++ .++|+.++        -.||.+++.-++.+.-.|.
T Consensus        38 ~~~~~W~~~g~~KVvLk~~~e~~L~~l~~~a~~~~l~~~~i~DAG~Tei~~gt~TvlaigP~p~~~i~  105 (123)
T 1rzw_A           38 SLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKID  105 (123)
T ss_dssp             THHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTCCSCSTTSCEEEEEEEECHHHHH
T ss_pred             HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf             87899986897289999299999999999999879988999858975049998689998778888998


No 50 
>>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:400-407,A:533-582)
Probab=40.49  E-value=24  Score=15.69  Aligned_cols=48  Identities=13%  Similarity=0.027  Sum_probs=36.1

Q ss_pred             CCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC--CEEEEC
Q ss_conf             066778715677089968997999999999999999999847--540042
Q gi|254781095|r  252 EFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSG--ILLEWE  299 (318)
Q Consensus       252 ~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~g--i~Le~E  299 (318)
                      |-|.--|+-----.+|+.++.+.++..++.+.+.+.|.+++.  ++||.|
T Consensus         7 ~~G~~VIYGDTDSvfV~~~~~~~eea~~~g~e~a~~In~~~~~pi~LEfE   56 (58)
T 1qht_A            7 RSGFKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYE   56 (58)
T ss_dssp             SSCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHC------CCCEEE
T ss_pred             CCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             66970453033248997388747888889999999877763330000301


No 51 
>>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} (A:258-504)
Probab=40.39  E-value=24  Score=15.68  Aligned_cols=62  Identities=13%  Similarity=0.088  Sum_probs=27.7

Q ss_pred             CCHHHHHHCCCCCCCCCCEEECCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCE
Q ss_conf             510002631868820667787156770--8996899799999999999999999984754004228
Q gi|254781095|r  238 SAWQLIEKSGCRGLEFGGAKISELHCN--FMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIK  301 (318)
Q Consensus       238 ~A~~LIe~~GlKG~~iG~a~vS~kHan--fivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~  301 (318)
                      .|-+|++++|++...-++......-..  +++.. .....+-...++.++ .-.++.||+++.+..
T Consensus        83 ~A~~ll~~ag~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~i~-~~l~~~Gi~v~~~~~  146 (247)
T 1vr5_A           83 XAKKILDELGFKDVNKDGFREDPNGKPFKLTIEC-PYGWTDWXVSIQSIA-EDLVKVGINVEPKYP  146 (247)
T ss_dssp             HHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEEC-CTTCHHHHHHHHHHH-HHHHTTTCCEEEECC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCHHHHHHHHHHH-HHHHHHHHCCCCCCC
T ss_conf             9999899739864587764014776664213236-888626789999999-997640200332222


No 52 
>>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (C:1-57)
Probab=39.29  E-value=19  Score=16.35  Aligned_cols=33  Identities=24%  Similarity=0.601  Sum_probs=23.8

Q ss_pred             EEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE
Q ss_conf             9996898999999998562998999847520366
Q gi|254781095|r   42 MFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV   75 (318)
Q Consensus        42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~   75 (318)
                      |..|+|.+|-.+++.... +-.-.+|.+|++++.
T Consensus         6 y~~p~sv~eA~~ll~~~~-~~~a~~lAGGtdLl~   38 (57)
T 3hrd_C            6 FFAPKTLEEAKGLLHQYK-DVPPAIIAGGTDLVI   38 (57)
T ss_dssp             EECCSSHHHHHHHHHHTT-TSCCEEESSCTTHHH
T ss_pred             EECCCCHHHHHHHHHHCC-CCCCEEEECCCHHHH
T ss_conf             668999999999998589-989769988765999


No 53 
>>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} (D:)
Probab=38.06  E-value=6.7  Score=19.24  Aligned_cols=18  Identities=44%  Similarity=0.737  Sum_probs=15.3

Q ss_pred             CCHHCCCCHHHHHHHHHC
Q ss_conf             120003872566324311
Q gi|254781095|r  124 GGFHFFYGIPGSIGGAAY  141 (318)
Q Consensus       124 ~GlE~l~gIPGTVGGAi~  141 (318)
                      +||.+.+.|||-||+|..
T Consensus        13 s~L~~AS~vPGPvG~aAt   30 (44)
T 1nov_D           13 SGLNFASTIPGPVGVAAT   30 (44)
T ss_pred             HHHHHHHCCCCCHHHHHH
T ss_conf             888888339974147887


No 54 
>>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* (A:1-27,A:280-393)
Probab=36.12  E-value=29  Score=15.26  Aligned_cols=69  Identities=16%  Similarity=0.062  Sum_probs=54.7

Q ss_pred             EEEECCCCCCCHHHHHHCCCC-CCCCCCEEECCCCCEEEEEC-C-CCCHHHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             889727898510002631868-82066778715677089968-9-9799999999999999999984754004
Q gi|254781095|r  229 STFKNPTGHSAWQLIEKSGCR-GLEFGGAKISELHCNFMINA-D-NATGYDLEYLGEQVRKKVFNQSGILLEW  298 (318)
Q Consensus       229 SvFkNP~~~~A~~LIe~~GlK-G~~iG~a~vS~kHanfivN~-g-~ata~di~~Li~~v~~~V~~~~gi~Le~  298 (318)
                      ..|+.|.+..++++.+.+--+ |..+++-.=.-++--|=|+. | +++..||..+++.+++ +.++.|+...+
T Consensus        66 tav~~Pegid~~~l~~~L~~~~gi~I~~G~g~~~~~~fRIghMG~~~~~edI~~~l~aL~~-~L~~~g~~~~~  137 (141)
T 2huf_A           66 TTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE-AVAAVKPDVQV  137 (141)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH-HHHHHCC----
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCC
T ss_conf             9998899989999999986339989966660211998998477764999999999999999-99984888888


No 55 
>>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235)
Probab=36.02  E-value=18  Score=16.49  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             14889999689899999999856299899984752
Q gi|254781095|r   37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGS   71 (318)
Q Consensus        37 G~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GS   71 (318)
                      |-.+..+..++.+|..++.+..+....+.|+|+|-
T Consensus         2 G~~~~v~~~~~~~~~~~~~~~~~~~~~v~IiGgG~   36 (116)
T 2gqw_A            2 GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGV   36 (116)
T ss_dssp             TCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSH
T ss_pred             CCCCCCCCCEEEHHCCCHHHHCCCCCCEEEECCCC
T ss_conf             65455321000010000011125676308972411


No 56 
>>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 2bbv_D (B:)
Probab=35.71  E-value=7.8  Score=18.83  Aligned_cols=18  Identities=39%  Similarity=0.458  Sum_probs=15.2

Q ss_pred             CCHHCCCCHHHHHHHHHC
Q ss_conf             120003872566324311
Q gi|254781095|r  124 GGFHFFYGIPGSIGGAAY  141 (318)
Q Consensus       124 ~GlE~l~gIPGTVGGAi~  141 (318)
                      +||.+.+.|||-||+|..
T Consensus        13 s~L~~AS~vPGPvG~aAt   30 (44)
T 2z2q_B           13 SSLAAASNIPGPIGVAAS   30 (44)
T ss_pred             HHHHHHCCCCCCHHHHHH
T ss_conf             888886059985002430


No 57 
>>1fjm_A Protein serine/threonine phosphatase-1 (alpha isoform, type 1); hydrolase, complex (hydrolase/toxin) complex; HET: ADD; 2.10A {Oryctolagus cuniculus} (A:)
Probab=33.48  E-value=31  Score=14.99  Aligned_cols=47  Identities=13%  Similarity=0.134  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEEEEEC-CHHHHHHHHHHH--HCCCCEEEECCCCEEEEECCCEECC
Q ss_conf             257661488999968-989999999985--6299899984752036604884022
Q gi|254781095|r   32 WFRTGGNAEVMFQPQ-DIHDLKYFLTLL--PSDIPITIVGLGSNILVRDAGIRGV   83 (318)
Q Consensus        32 t~rvGG~A~~~~~p~-s~~el~~~l~~~--~~~~p~~iiG~GSNil~~D~~~~G~   83 (318)
                      -.++-++...+-..+ +..||..++...  +....+..+|.     +-|.|..++
T Consensus        52 l~~i~~~i~vvGDlHG~~~dL~~i~~~~g~p~~~~yvFLGD-----yVDRG~~sl  101 (330)
T 1fjm_A           52 LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGD-----YVDRGKQSL  101 (330)
T ss_dssp             EEEECSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSC-----CSSSSSCHH
T ss_pred             EEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCC-----CCCCCCCHH
T ss_conf             79955996999878778087999999669986432885376-----565686406


No 58 
>>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} (A:124-243)
Probab=31.53  E-value=34  Score=14.79  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             89999689899999999856299899984752
Q gi|254781095|r   40 EVMFQPQDIHDLKYFLTLLPSDIPITIVGLGS   71 (318)
Q Consensus        40 ~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GS   71 (318)
                      +-++..++.++..++..+.+....+.|+|+|-
T Consensus         5 ~~v~~~~~~~d~~~~~~~~~~~k~v~ViGgG~   36 (120)
T 2cdu_A            5 SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGY   36 (120)
T ss_dssp             TTEEECSSHHHHHHHHHHGGGCSEEEEECCSH
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEE
T ss_conf             12222221111111000110113232322100


No 59 
>>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} (A:137-284,A:358-441)
Probab=28.87  E-value=26  Score=15.49  Aligned_cols=133  Identities=10%  Similarity=-0.019  Sum_probs=70.2

Q ss_pred             CCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCC-----CCE---EEEEEEEEEEECCCCCEEEEC
Q ss_conf             665123311221567777887520120003872566324311573215-----831---345666434411232100001
Q gi|254781095|r  100 HCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGAN-----NCE---TSQYVVEVHGIDRKGNQHVIP  171 (318)
Q Consensus       100 ~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGay-----G~e---i~d~i~~V~~~d~~g~~~~l~  171 (318)
                      +..+.+.......++...|.+.|+.+-++..-.+........+.-..+     ..+   ....+..|....+.|.+..=.
T Consensus        77 RIiIl~~~~~~~~~il~~A~~~gl~~~~Yv~I~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~i~~~~PtG~v~id~  156 (232)
T 1jdp_A           77 RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTAGQVSIDA  156 (232)
T ss_dssp             SEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCTEEEEECT
T ss_pred             CEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCEEEEECC
T ss_conf             54999935899999999999828988876999955334554346631235531167899987624213468863699899


Q ss_pred             CCCCCCCCCCCCCCC--CC-CEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             233443100232246--76-20010023545654310012221001100015566704658897278
Q gi|254781095|r  172 REQLKYQYRSSEITK--DL-IITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPT  235 (318)
Q Consensus       172 ~~e~~f~YR~S~~~~--~~-iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP~~~~s~GSvFkNP~  235 (318)
                      +-|-.-.|-=-.+++  +. ...-+.+....  + .....-.....+-..+.|.+.|-||=--.+++
T Consensus       157 ~gdr~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~~~i~w~~~~~p~d~p~cgf~~e~c~  220 (232)
T 1jdp_A          157 NGDRYGDFSVIAMTDVEAGTQEVIGDYFGKE--G-RFEMRPNVKYPWGPLKLRIDENRIVEHTNSSP  220 (232)
T ss_dssp             TSBBCCEEEEEEEEETTTTEEEEEEEEETTT--T-EEEECC--------------------------
T ss_pred             CCCCCCCEEEEEEEECCCCCEEEEEEEECCC--C-EEEECCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             9983575799999988999189999998998--8-39951896447899896799885667799998


No 60 
>>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:126-227)
Probab=27.02  E-value=40  Score=14.30  Aligned_cols=28  Identities=18%  Similarity=0.072  Sum_probs=22.5

Q ss_pred             EEECCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             9968989999999985629989998475
Q gi|254781095|r   43 FQPQDIHDLKYFLTLLPSDIPITIVGLG   70 (318)
Q Consensus        43 ~~p~s~~el~~~l~~~~~~~p~~iiG~G   70 (318)
                      +..++.+|..++.+..+....+.|+|+|
T Consensus         3 ~~~r~~~d~~~i~~~~~~~k~i~IvGgG   30 (102)
T 3klj_A            3 FSLYSYDDALKIKDECKNKGKAFIIGGG   30 (102)
T ss_dssp             ECCSSHHHHHHHHHHHHHHSCEEEECCS
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             1337799998765544049769999786


No 61 
>>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A (A:)
Probab=25.43  E-value=43  Score=14.12  Aligned_cols=46  Identities=17%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEEEEEC-CHHHHHHHHHHHH---CCCCEEEECCCCEEEEECCCEEC
Q ss_conf             257661488999968-9899999999856---29989998475203660488402
Q gi|254781095|r   32 WFRTGGNAEVMFQPQ-DIHDLKYFLTLLP---SDIPITIVGLGSNILVRDAGIRG   82 (318)
Q Consensus        32 t~rvGG~A~~~~~p~-s~~el~~~l~~~~---~~~p~~iiG~GSNil~~D~~~~G   82 (318)
                      +.++.++.-.+-..+ +..||.++++...   ...++.++|.     .-|.|..+
T Consensus        55 ~~~~~~~v~VvGDiHG~~~dl~~if~~~g~~~~~~~yvFLGD-----YVDRG~~s  104 (315)
T 3h63_A           55 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGD-----FVDRGSFS  104 (315)
T ss_dssp             CCCTTCEEEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESC-----CSSSSTTH
T ss_pred             ECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECC-----CCCCCCCC
T ss_conf             147899769996577898999999997699998762899556-----46654441


No 62 
>>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:117-237)
Probab=24.55  E-value=42  Score=14.21  Aligned_cols=29  Identities=10%  Similarity=0.370  Sum_probs=22.1

Q ss_pred             EEEECCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             99968989999999985629989998475
Q gi|254781095|r   42 MFQPQDIHDLKYFLTLLPSDIPITIVGLG   70 (318)
Q Consensus        42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~G   70 (318)
                      .+..++..+..++..+.+....+.|+|+|
T Consensus         7 v~~~~~~~~~~~~~~~~~~~~~v~ViGgG   35 (121)
T 3fg2_P            7 VLYLRTLDESEVLRQRMPDKKHVVVIGAG   35 (121)
T ss_dssp             EECCSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred             CCEEEEHHHHHHHHHHHHCCCCCEEECCC
T ss_conf             10000010111010011025631898032


No 63 
>>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} (A:95-138,A:230-291)
Probab=24.09  E-value=46  Score=13.96  Aligned_cols=69  Identities=19%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             HHHHHH-HHHCC-CCEEEECCCCEEEEECCCEECCHHHHCCCCCCCEEEECCCCC-CCCCEE-EHHH-HHHHHHHHHCC
Q ss_conf             999999-85629-989998475203660488402202211234431133026651-233112-2156-77778875201
Q gi|254781095|r   51 LKYFLT-LLPSD-IPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEM-IVGARC-SGKS-LANSALRHGIG  124 (318)
Q Consensus        51 l~~~l~-~~~~~-~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~~~i~~~~~~~i-~v~AG~-~~~~-l~~~~~~~gl~  124 (318)
                      +..+.+ .+..+ -=.-|||.|||.-+-|+    --|......+-.|...+- .+ .+|+=+ ...+ |...+.+.|+.
T Consensus         2 llaAarA~cg~e~GIaCILGTGSNsc~yDG----k~I~~nv~~LGYI~~~~~-pvhFVGSIA~~~q~~L~eva~~~gl~   75 (106)
T 1zxo_A            2 XLAAAHGLCGQKAGIACILGTGSNSCFYNG----KEIVSNISPLGFIDYKQY-PVHFIGSIAYCYKEILQDAARQTGIQ   75 (106)
T ss_dssp             HHHHHHHTTTTSCBEEEEESSSEEEEEECS----SSEEEECCCCCTTCTTTS-CEEECSHHHHHTHHHHHHHTTTTTCC
T ss_pred             CHHHHHHHCCCCCEEEEEECCCEEEEEEEC----CCCEEECCCCCCCCCCCC-CEEEECCHHHHHHHHHHHHHHHCCCE
T ss_conf             378999743899849999268800699958----998797177464757997-68998667999999999999986987


No 64 
>>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae R6} (X:80-165)
Probab=22.41  E-value=42  Score=14.20  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             CCHHHHHHCCCCCCCCCCEEECCCCCEEEEECC
Q ss_conf             510002631868820667787156770899689
Q gi|254781095|r  238 SAWQLIEKSGCRGLEFGGAKISELHCNFMINAD  270 (318)
Q Consensus       238 ~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g  270 (318)
                      -.|.|..++|++.-.+|+..|.+.++-+++...
T Consensus        25 ilGal~~~~Gi~r~~iGdI~i~~~~~~v~v~~~   57 (86)
T 2fph_X           25 ILGTVINQLGIERKLFGDILVDEERAQIMINQQ   57 (86)
T ss_dssp             HHSCSSSCCCCCGGGEEEEECSSSCCEEEEEGG
T ss_pred             HHHHHHHCCCCCHHHCCCEEEECCEEEEEECHH
T ss_conf             999987204998877267898499899998399


No 65 
>>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} (D:57-140)
Probab=21.25  E-value=45  Score=13.99  Aligned_cols=38  Identities=18%  Similarity=0.033  Sum_probs=27.8

Q ss_pred             HHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCC
Q ss_conf             24311573215831345666434411232100001233
Q gi|254781095|r  137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQ  174 (318)
Q Consensus       137 GGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e  174 (318)
                      ||-++.-||+|..-++..=..+.+-.+.|++++++.+-
T Consensus        35 ggk~~RsAGt~a~ii~k~~~~~~ikLpSge~r~i~~~c   72 (84)
T 1giy_D           35 GGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKC   72 (84)
T ss_pred             CEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCC
T ss_conf             52799858986999993499999986898879877778


No 66 
>>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} (A:)
Probab=21.18  E-value=51  Score=13.68  Aligned_cols=40  Identities=18%  Similarity=-0.020  Sum_probs=32.5

Q ss_pred             HHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCC
Q ss_conf             3243115732158313456664344112321000012334
Q gi|254781095|r  136 IGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQL  175 (318)
Q Consensus       136 VGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~  175 (318)
                      =||-.+..||+|..=+...-..+.+-.+.|++++++.+-+
T Consensus        90 ~ggk~~RsAGt~a~ii~k~~~~~~ikLPSg~~k~i~~~c~  129 (137)
T 1rl2_A           90 RGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRXILGKCR  129 (137)
T ss_dssp             SCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSE
T ss_pred             CCCEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCC
T ss_conf             8758998046527999973999999938989789998595


No 67 
>>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (A:1-168)
Probab=21.16  E-value=44  Score=14.06  Aligned_cols=39  Identities=13%  Similarity=-0.030  Sum_probs=31.3

Q ss_pred             HHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCC
Q ss_conf             243115732158313456664344112321000012334
Q gi|254781095|r  137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQL  175 (318)
Q Consensus       137 GGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~  175 (318)
                      ||.++..||+|..=++..-..|.+-.+.|+++.++.+-+
T Consensus       116 ggk~~RsAGt~a~ii~k~~~~v~ikLPSG~~k~i~~~c~  154 (168)
T 1vq8_A          116 GGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCR  154 (168)
T ss_dssp             CCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCE
T ss_pred             CCCEEECCCCCEEEECCCCCEEEEECCCCCEEEECHHHC
T ss_conf             741540233100340102656999868988688331313


No 68 
>>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha catalytic subunit; PP1:nodularin CO-carbohydrate metabolism, cell cycle, cell division; HET: X9A; 1.63A {Homo sapiens} PDB: 3e7b_A* 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* (A:)
Probab=20.44  E-value=54  Score=13.50  Aligned_cols=47  Identities=13%  Similarity=0.117  Sum_probs=30.3

Q ss_pred             CCCCCCCEEEEEEEEC-CHHHHHHHHHHH--HCCCCEEEECCCCEEEEECCCEEC
Q ss_conf             2257661488999968-989999999985--629989998475203660488402
Q gi|254781095|r   31 TWFRTGGNAEVMFQPQ-DIHDLKYFLTLL--PSDIPITIVGLGSNILVRDAGIRG   82 (318)
Q Consensus        31 tt~rvGG~A~~~~~p~-s~~el~~~l~~~--~~~~p~~iiG~GSNil~~D~~~~G   82 (318)
                      +-.+|-+|+-.+-..+ +.+||..++...  +....+..+|.     +-|.|..+
T Consensus        50 ~l~~i~~pv~VvGDlHG~~~dL~~if~~~g~~~~~~yvFLGD-----yVDRG~~s   99 (299)
T 3e7a_A           50 ILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGD-----YVDRGKQS   99 (299)
T ss_dssp             SEEEECSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSC-----CSSSSSCH
T ss_pred             CEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCC-----CCCCCCCH
T ss_conf             879955996999878778588999998467875324886365-----46778641


No 69 
>>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} (A:89-216)
Probab=20.31  E-value=35  Score=14.73  Aligned_cols=34  Identities=6%  Similarity=-0.046  Sum_probs=19.4

Q ss_pred             CHHHHHHHHHH-HHCCCCEEEECCCCEEEEECCCE
Q ss_conf             98999999998-56299899984752036604884
Q gi|254781095|r   47 DIHDLKYFLTL-LPSDIPITIVGLGSNILVRDAGI   80 (318)
Q Consensus        47 s~~el~~~l~~-~~~~~p~~iiG~GSNil~~D~~~   80 (318)
                      ...++.+.++. .+.+.|+...-.+..-.+.-+|+
T Consensus        55 ~l~~iE~~~n~~I~~~~pv~~~~~~~~r~v~i~g~   89 (128)
T 2e1b_A           55 YKEQIISLFNKYVDEGGEVKIWWEGDRRYTQIRDF   89 (128)
T ss_dssp             GHHHHHHHHHHHHHHCCBEEEEESSSCEEEEETTS
T ss_pred             HHHHHHHHHHEEECCCCEEEEEEECCEEEEEECCE
T ss_conf             88876543214641373688886233477789977


Done!