Query gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 318 No_of_seqs 173 out of 2524 Neff 6.4 Searched_HMMs 33803 Date Wed Jun 1 21:35:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781095.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1hsk_A UDP-N-acetylenolpyruvo 100.0 2.2E-29 6.4E-34 205.6 6.8 74 222-295 1-74 (74) 2 >2gqt_A UDP-N-acetylenolpyruvy 99.9 6.7E-24 2E-28 170.9 4.0 61 229-289 1-61 (62) 3 >2gqt_A UDP-N-acetylenolpyruvy 99.9 4.5E-23 1.3E-27 165.7 5.1 127 99-228 3-129 (129) 4 >1hsk_A UDP-N-acetylenolpyruvo 99.8 4.5E-22 1.3E-26 159.4 3.4 123 99-221 8-131 (131) 5 >3i99_A UDP-N-acetylenolpyruvo 99.8 6E-20 1.8E-24 146.0 6.7 57 239-295 1-57 (57) 6 >3i99_A UDP-N-acetylenolpyruvo 99.7 5.9E-18 1.8E-22 133.3 6.6 76 14-90 6-82 (106) 7 >2gqt_A UDP-N-acetylenolpyruvy 99.7 7.4E-18 2.2E-22 132.7 5.3 68 17-90 1-68 (77) 8 >2ipi_A Aclacinomycin oxidored 99.7 3.8E-17 1.1E-21 128.2 8.9 196 34-237 51-274 (278) 9 >2bvf_A 6-hydroxy-D-nicotine o 99.7 9.1E-17 2.7E-21 125.8 6.8 180 17-200 12-205 (252) 10 >1n62_C Carbon monoxide dehydr 99.7 9.8E-18 2.9E-22 132.0 0.5 160 37-199 3-176 (176) 11 >2vfr_A Xylitol oxidase, aldit 99.6 3.9E-16 1.1E-20 121.9 6.6 169 25-199 5-182 (182) 12 >1uxy_A MURB, uridine diphosph 99.6 7.5E-16 2.2E-20 120.1 7.3 65 25-90 1-66 (87) 13 >1uxy_A MURB, uridine diphosph 99.6 1.3E-15 3.8E-20 118.6 5.9 108 99-206 9-121 (124) 14 >1w1o_A Cytokinin dehydrogenas 99.6 3.8E-15 1.1E-19 115.6 6.5 192 34-226 64-278 (285) 15 >3fw9_A Reticuline oxidase; BI 99.6 5.1E-15 1.5E-19 114.8 6.9 194 34-237 41-254 (258) 16 >2i0k_A Oxidoreductase; MIX al 99.5 4E-14 1.2E-18 109.2 9.1 165 34-199 31-220 (220) 17 >1uxy_A MURB, uridine diphosph 99.5 3.3E-14 9.7E-19 109.7 6.3 46 249-294 1-46 (47) 18 >3i99_A UDP-N-acetylenolpyruvo 99.5 2.7E-14 8.1E-19 110.2 5.9 108 99-206 9-121 (124) 19 >1hsk_A UDP-N-acetylenolpyruvo 99.2 1.4E-10 4.2E-15 86.7 8.4 82 8-89 17-100 (121) 20 >1ffv_C CUTM, flavoprotein of 98.9 6.1E-10 1.8E-14 82.7 3.7 156 38-197 4-174 (176) 21 >1zr6_A Glucooligosaccharide o 98.8 3.4E-09 9.9E-14 78.0 4.7 110 92-202 2-118 (168) 22 >2exr_A Cytokinin dehydrogenas 98.4 7.4E-08 2.2E-12 69.5 1.2 137 93-231 8-160 (165) 23 >1t3q_C Quinoline 2-oxidoreduc 98.4 6.9E-08 2E-12 69.7 1.1 155 38-197 4-173 (174) 24 >2uuu_A Alkyldihydroxyacetonep 98.1 1.8E-06 5.2E-11 60.8 3.9 129 96-226 6-153 (158) 25 >1wvf_A 4-cresol dehydrogenase 98.1 5E-06 1.5E-10 58.0 5.1 104 95-200 4-128 (129) 26 >2yvs_A Glycolate oxidase subu 98.0 3.3E-06 9.9E-11 59.1 3.4 101 99-200 6-114 (114) 27 >1uxy_A MURB, uridine diphosph 98.0 7.5E-07 2.2E-11 63.2 -0.1 23 226-248 1-49 (49) 28 >1e8g_A Vanillyl-alcohol oxida 98.0 9.4E-06 2.8E-10 56.2 5.2 84 96-180 6-99 (147) 29 >1rm6_B 4-hydroxybenzoyl-COA r 98.0 2.7E-05 8E-10 53.3 7.5 151 40-196 7-213 (216) 30 >3js8_A Cholesterol oxidase; c 97.6 3.3E-05 9.8E-10 52.8 3.0 101 95-199 6-129 (129) 31 >1f0x_A DLDH, D-lactate dehydr 97.2 0.00036 1.1E-08 46.2 3.8 82 7-88 10-102 (103) 32 >1wvf_A 4-cresol dehydrogenase 97.0 0.00069 2E-08 44.4 4.0 86 4-89 15-111 (112) 33 >2uuu_A Alkyldihydroxyacetonep 97.0 0.0003 8.9E-09 46.7 2.1 60 32-91 55-116 (117) 34 >1e8g_A Vanillyl-alcohol oxida 96.7 0.0014 4.1E-08 42.5 3.4 57 33-89 65-125 (126) 35 >2exr_A Cytokinin dehydrogenas 96.6 0.0026 7.6E-08 40.8 4.2 82 9-90 27-115 (115) 36 >1zr6_A Glucooligosaccharide o 96.6 0.0019 5.7E-08 41.6 3.3 55 34-88 38-95 (95) 37 >3js8_A Cholesterol oxidase; c 95.7 0.013 3.8E-07 36.4 4.1 40 34-73 25-65 (87) 38 >2w3s_A Xanthine dehydrogenase 94.2 0.051 1.5E-06 32.6 3.7 108 35-195 6-117 (120) 39 >1v97_A XD, xanthine dehydroge 94.0 0.1 3E-06 30.8 4.9 107 92-200 3-130 (278) 40 >3i99_A UDP-N-acetylenolpyruvo 92.7 0.027 8.1E-07 34.3 0.3 12 226-237 1-12 (38) 41 >1rlk_A Hypothetical protein T 75.6 3.1 9E-05 21.4 3.4 56 30-85 43-107 (117) 42 >1wn2_A Peptidyl-tRNA hydrolas 73.4 5.9 0.00018 19.6 4.4 57 29-85 46-111 (121) 43 >1xty_A PTH, peptidyl-tRNA hyd 72.9 5.2 0.00015 19.9 4.1 57 30-86 46-111 (120) 44 >2zv3_A PTH, peptidyl-tRNA hyd 64.1 8 0.00024 18.7 3.5 58 28-85 39-105 (115) 45 >1q7s_A BIT1, protein CGI-147; 63.5 10 0.0003 18.1 3.9 57 29-85 42-107 (117) 46 >1iug_A Putative aspartate ami 59.9 12 0.00036 17.6 5.1 71 223-294 40-112 (114) 47 >2yrr_A Aminotransferase, clas 53.6 15 0.00045 17.0 3.9 65 225-289 51-117 (119) 48 >1v97_A XD, xanthine dehydroge 53.2 4.4 0.00013 20.4 0.7 41 32-75 4-44 (62) 49 >1rzw_A Protein AF2095(GR4); b 47.0 19 0.00057 16.3 4.5 59 28-86 38-105 (123) 50 >1qht_A Protein (DNA polymeras 40.5 24 0.00072 15.7 3.9 48 252-299 7-56 (58) 51 >1vr5_A Oligopeptide ABC trans 40.4 24 0.00072 15.7 2.9 62 238-301 83-146 (247) 52 >3hrd_C Nicotinate dehydrogena 39.3 19 0.00057 16.4 2.2 33 42-75 6-38 (57) 53 >1nov_D Nodamura virus coat pr 38.1 6.7 0.0002 19.2 -0.3 18 124-141 13-30 (44) 54 >2huf_A Alanine glyoxylate ami 36.1 29 0.00084 15.3 4.3 69 229-298 66-137 (141) 55 >2gqw_A Ferredoxin reductase; 36.0 18 0.00054 16.5 1.6 35 37-71 2-36 (116) 56 >2z2q_B Coat protein gamma; wi 35.7 7.8 0.00023 18.8 -0.3 18 124-141 13-30 (44) 57 >1fjm_A Protein serine/threoni 33.5 31 0.00093 15.0 3.4 47 32-83 52-101 (330) 58 >2cdu_A NADPH oxidase; flavoen 31.5 34 0.001 14.8 2.4 32 40-71 5-36 (120) 59 >1jdp_A NPR-C, atrial natriure 28.9 26 0.00078 15.5 1.5 133 100-235 77-220 (232) 60 >3klj_A NAD(FAD)-dependent deh 27.0 40 0.0012 14.3 3.0 28 43-70 3-30 (102) 61 >3h63_A Serine/threonine-prote 25.4 43 0.0013 14.1 2.3 46 32-82 55-104 (315) 62 >3fg2_P Putative rubredoxin re 24.5 42 0.0012 14.2 1.9 29 42-70 7-35 (121) 63 >1zxo_A Conserved hypothetical 24.1 46 0.0014 14.0 3.3 69 51-124 2-75 (106) 64 >2fph_X YLMH; division protein 22.4 42 0.0012 14.2 1.5 33 238-270 25-57 (86) 65 >1giy_D 50S ribosomal protein 21.3 45 0.0013 14.0 1.5 38 137-174 35-72 (84) 66 >1rl2_A Protein (ribosomal pro 21.2 51 0.0015 13.7 1.7 40 136-175 90-129 (137) 67 >1vq8_A 50S ribosomal protein 21.2 44 0.0013 14.1 1.4 39 137-175 116-154 (168) 68 >3e7a_A PP-1A, serine/threonin 20.4 54 0.0016 13.5 3.9 47 31-82 50-99 (299) 69 >2e1b_A PH0108, 216AA long hyp 20.3 35 0.001 14.7 0.7 34 47-80 55-89 (128) No 1 >>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:231-304) Probab=99.96 E-value=2.2e-29 Score=205.63 Aligned_cols=74 Identities=39% Similarity=0.576 Sum_probs=72.1 Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCE Q ss_conf 66704658897278985100026318688206677871567708996899799999999999999999984754 Q gi|254781095|r 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL 295 (318) Q Consensus 222 ~~~~s~GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~ 295 (318) +++||||||||||++.+||||||+|||||+++|+|+||++|||||||.|+||++|+++||++||++|+++|||+ T Consensus 1 l~~psaGS~FkNP~~~~Ag~LIe~~GlkG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~GI~ 74 (74) T 1hsk_A 1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIE 74 (74) T ss_dssp TTSCEECCCBCCCTTSCHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCC T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 77874263378876600799999848898777698996788858997899899999999999999999988982 No 2 >>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:199-260) Probab=99.89 E-value=6.7e-24 Score=170.91 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=59.9 Q ss_pred EEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 8897278985100026318688206677871567708996899799999999999999999 Q gi|254781095|r 229 STFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVF 289 (318) Q Consensus 229 SvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~ 289 (318) ||||||++.+||||||+|||||+++|+|+||+||||||||.|+||++|+++|+++||+.|+ T Consensus 1 S~FknP~g~~Ag~LIe~~GlKG~~~G~a~vs~khanfivN~g~ata~di~~l~~~i~~~Vk 61 (62) T 2gqt_A 1 CAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEELP 61 (62) T ss_dssp CCBCCCTTCCHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHSC T ss_pred EEEECCCCCCHHHHHHHCCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHC T ss_conf 1788689976366566502479654497982347858998999899999999999999879 No 3 >>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:70-198) Probab=99.87 E-value=4.5e-23 Score=165.70 Aligned_cols=127 Identities=31% Similarity=0.401 Sum_probs=119.7 Q ss_pred CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCC Q ss_conf 26651233112215677778875201200038725663243115732158313456664344112321000012334431 Q gi|254781095|r 99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQ 178 (318) Q Consensus 99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~ 178 (318) ++..++|+||+.|.+|.+++.++||++.++++.+|+||||++.||+++||.++.+++.++.++ .+|++++++++|+.|+ T Consensus 3 ~~~~v~v~aG~~~~~l~~~l~~~gl~~~~~~~~~~~tvGG~i~~~a~~~g~~~~~~v~~~~v~-~~G~~~~~~~~~~~~~ 81 (129) T 2gqt_A 3 YDLKGWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALEAVEVF-HDGAFHVYCPEELGFG 81 (129) T ss_dssp BCTTSEEETTSBHHHHHHHHHHTTEESCGGGTTCCCBHHHHHHTTCEETTEEGGGGEEEEEEE-ETTEEEEECGGGSCCB T ss_pred CCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCEECCEEEEEEEEEEEEE-CCCCEEEECHHHCCCC T ss_conf 331002255020477788887660354333156135442442102123434877789999998-2897799726980305 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE Q ss_conf 00232246762001002354565431001222100110001556670465 Q gi|254781095|r 179 YRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGG 228 (318) Q Consensus 179 YR~S~~~~~~iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP~~~~s~G 228 (318) ||.+.+....||++++|++.|.++..++.+|.++ .+|++.|| ..|||| T Consensus 82 ~~~g~~g~~Giit~~~l~l~p~~~~~i~~~~~~~-~~~~~~~p-~~~saG 129 (129) T 2gqt_A 82 YRKSHLPPGGIVTRVRLKLKERPKEEILRRMAEV-DRARKGQP-KRKSAG 129 (129) T ss_dssp TTBCCCSTTCEEEEEEECCEECCHHHHHHHHHHH-HHHTTTSC-SSCSSS T ss_pred CCCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHH-HCCCCCCC-CCCCCC T ss_conf 0125676432011110001568889999999876-40235787-678775 No 4 >>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:100-230) Probab=99.84 E-value=4.5e-22 Score=159.37 Aligned_cols=123 Identities=29% Similarity=0.467 Sum_probs=118.1 Q ss_pred CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCC Q ss_conf 26651233112215677778875201200038725663243115732158313456664344112321000012334431 Q gi|254781095|r 99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQ 178 (318) Q Consensus 99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~ 178 (318) +...++|+||+.|.+|.+++.++||.+.++.+++||||||++.||+++++++++|++.++++++.+|++.++++++++|. T Consensus 8 ~~~~v~v~aGv~~~~l~~~l~~~G~~~~~~~~~~~g~igg~~~~~~~~~~g~~~d~v~~~~~v~~~G~i~~~~~~~~~~~ 87 (131) T 1hsk_A 8 SDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELD 87 (131) T ss_dssp ETTEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCSBHHHHHHHTCEETTEEHHHHEEEEEEECTTSCEEEEETTTTTCB T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHH T ss_conf 49839996485079999999984679834687437435000112566677267899888999944996898226776565 Q ss_pred CCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCC Q ss_conf 00232246-76200100235456543100122210011000155 Q gi|254781095|r 179 YRSSEITK-DLIITHVVLRGFPESQNIISAAIANVCHHRETVQP 221 (318) Q Consensus 179 YR~S~~~~-~~iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP 221 (318) ||.+.++. ..||++++|++.|..+..+...+.++.+.|+++|| T Consensus 88 ~~~~~~~~~~GIit~~~l~l~~~~~~~i~~~~~~~~~~r~~~~P 131 (131) T 1hsk_A 88 YRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQP 131 (131) T ss_dssp TTBCHHHHTTCEEEEEEEECEECCHHHHHHHHHHHHHHHHHHSC T ss_pred HCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 41666776652899899865368816779999999998860498 No 5 >>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:277-333) Probab=99.80 E-value=6e-20 Score=145.97 Aligned_cols=57 Identities=32% Similarity=0.543 Sum_probs=56.0 Q ss_pred CHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCE Q ss_conf 100026318688206677871567708996899799999999999999999984754 Q gi|254781095|r 239 AWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL 295 (318) Q Consensus 239 A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~ 295 (318) ||||||+|||||+++|+|+||+||||||||.|+||++|+++|++.||+.|+++|||+ T Consensus 1 Ag~LIe~~GlKG~~~G~a~vs~khanflvN~g~at~~di~~l~~~i~~~V~~~fgI~ 57 (57) T 3i99_A 1 AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLXLAADIQQRVFNCYGIE 57 (57) T ss_dssp HHHHHHHTTCTTCEETTEEECTTSTTEEEECSSCCHHHHHHHHHHHHHHHHHHHSCC T ss_pred HHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999837588702697985678858998999999999999999999999987981 No 6 >>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357) Probab=99.73 E-value=5.9e-18 Score=133.35 Aligned_cols=76 Identities=22% Similarity=0.216 Sum_probs=69.1 Q ss_pred HHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC Q ss_conf 8750662775488001522576614889999689899999999856-2998999847520366048840220221123 Q gi|254781095|r 14 GKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA 90 (318) Q Consensus 14 ~~~~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~ 90 (318) ..++++++++|+||++||||||||+|++|+.|++.+||.+++++++ +++|++|||+|||+||+| +|+|+||++... T Consensus 6 ~~~~~~~I~~~~~L~~~tTfrIGG~A~~lv~p~s~eeL~~il~~~~~~~ip~~ILG~GSNiLf~D-g~~GlVI~~~~~ 82 (106) T 3i99_A 6 YPKTTXQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNXLFTC-HYTGXIVVNRLN 82 (106) T ss_dssp ---CCSCCEEEEESGGGSTTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECS-CEEEEEEEECCC T ss_pred CCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEC-CCCCCEEEECCC T ss_conf 88767368618987657443407187299987999999999998876699889985843799806-986625898578 No 7 >>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:1-69,A:261-268) Probab=99.71 E-value=7.4e-18 Score=132.74 Aligned_cols=68 Identities=29% Similarity=0.364 Sum_probs=63.0 Q ss_pred HCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCEECCHHHHCCC Q ss_conf 06627754880015225766148899996898999999998562998999847520366048840220221123 Q gi|254781095|r 17 LRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVVLRLSNA 90 (318) Q Consensus 17 ~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~ 90 (318) ++++++.|+||++||||||||+|++|++|+|.+|+.+ +++|+++||+|||+||+|++++|+||++.+. T Consensus 1 ~~~~i~~~~~L~~~tT~~IGG~A~~~~~p~s~e~l~~------~~~p~~viG~GSNlL~~D~~~~g~VI~~~~~ 68 (77) T 2gqt_A 1 MEFMRVERVLLKDYTTLGVGGPAELWTVETREELKRA------TEAPYRVLGNGSNLLVLDEGVPERVIRLAGE 68 (77) T ss_dssp -CCCEEEEEEGGGGSSSCCCCEEEEEEECSHHHHHHH------TTSCEEECSSSSSEEECTTCCSSEEEEECGG T ss_pred CCCCEECCCCCCCCCEEEECEEEEEEECCCHHHHHHH------HCCCCEEEECCEEEEEECCCEECEEEEEEEE T ss_conf 9861117665676434313708999971999999987------5899189936278999689890326554320 No 8 >>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} (A:1-237,A:481-521) Probab=99.71 E-value=3.8e-17 Score=128.21 Aligned_cols=196 Identities=8% Similarity=-0.043 Sum_probs=145.2 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEEECCCEECCHHHHCCCCCCCEEEEC-CCCCCCCCEEEH Q ss_conf 7661488999968989999999985-62998999847520366048840220221123443113302-665123311221 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN-HCEMIVGARCSG 111 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~~~i~~~~-~~~i~v~AG~~~ 111 (318) ...+..+.++.|++++|+.++++++ ++++|+.+.|+|+|..-.....++.+|.+... +..++++. ...++|+||+.| T Consensus 51 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~rGgGhs~~g~~~~~~~~vi~~~~~-~~~~~~d~~~~~v~v~aG~~~ 129 (278) T 2ipi_A 51 RFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ-MRQVFYDSGKRAFAVEPGATL 129 (278) T ss_dssp TCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT-CCCEEEETTTTEEEECTTSBH T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCC-CCCEEECCCCCEEEECCCCCH T ss_conf 6768998899559999999999999987980999899837563836779759998778-998798389998999068199 Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEEEEC----------CCCCC Q ss_conf 56777788752012000387256632431157321-----5831345666434411232100001----------23344 Q gi|254781095|r 112 KSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQHVIP----------REQLK 176 (318) Q Consensus 112 ~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~~l~----------~~e~~ 176 (318) .++.+.+.++|+......+.-++|+||++.+|++. || .+.|++.++++++.+|++..+. ..|+. T Consensus 130 ~~l~~~l~~~g~~~~~~~~~~~~tiGG~~~~~~~g~~s~~~G-~~~d~v~~~~vV~~dG~~~~~~~~~~~~~~~~~~dlf 208 (278) T 2ipi_A 130 GETYRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDG-VVADHLYAVEVVVVDASGRARKVVATSAADDPNRELW 208 (278) T ss_dssp HHHHHHHHHHHSBCCCCCSCTTCBHHHHTTTTCCCTTHHHHC-CGGGGEEEEEEEEECTTSCEEEEEEECCTTCTTHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCHHH T ss_conf 999999997189243798767302357677886078768664-0004401379998778089975322012235544899 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCH-----------HHHHHCCCCCCCCCCCCCEEEEEEEECCCCC Q ss_conf 310023224676200100235456543100-----------1222100110001556670465889727898 Q gi|254781095|r 177 YQYRSSEITKDLIITHVVLRGFPESQNIIS-----------AAIANVCHHRETVQPIKEKTGGSTFKNPTGH 237 (318) Q Consensus 177 f~YR~S~~~~~~iIl~a~l~l~~~~~~~i~-----------~~~~~~~~~R~~~qP~~~~s~GSvFkNP~~~ 237 (318) ++.|......-.||++++|++.|..+.... .....+.+.+.+..|.+ ||++|... T Consensus 209 ~a~~~Gs~G~lGIVt~~tlrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 274 (278) T 2ipi_A 209 WAHTGGGGGNFGIVTRYWFRTPGATGTDPTSGVPWYTLYYKGNYPRLQKVKARWDPRD------VFRHALSV 274 (278) T ss_dssp HHTTTSCSSSSCEEEEEEECCSSCCSSCGCCSCCHHHHHHGGGHHHHHHHHHHHCTTC------CSCCTTCC T ss_pred HHHHHHHHCCCCEEEEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCC T ss_conf 9887531011313799999941588626810126899865789999999999769625------67989794 No 9 >>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* (A:1-204,A:412-459) Probab=99.67 E-value=9.1e-17 Score=125.85 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=141.9 Q ss_pred HCCEEEE--CCCCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC Q ss_conf 0662775--488001522---576614889999689899999999856-2998999847520366048840220221123 Q gi|254781095|r 17 LRGKFQE--NFPLKQITW---FRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA 90 (318) Q Consensus 17 ~~g~i~~--n~~L~~~tt---~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~ 90 (318) +.|++.. +.+....++ -.....+..++.|++++|+++++++++ +++|+.+.|+|+|..-..-.-++++|.++. T Consensus 12 ~~g~v~~p~~~~y~~~~~~w~~~~~~~P~~Vv~P~s~eeV~~iV~~a~~~~~~v~vrGgGhs~~g~~~~~~givIdl~~- 90 (252) T 2bvf_A 12 IQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRL- 90 (252) T ss_dssp CSSEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTCCSSSEEEECTT- T ss_pred CCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCC- T ss_conf 9925989898237999978855646788889964999999999999998797699988996889875887989999857- Q ss_pred CCCCEEEECC-CCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC----CCCEEEEEEEEEEEECCCC Q ss_conf 4431133026-6512331122156777788752012000387256632431157321----5831345666434411232 Q gi|254781095|r 91 GFSNIEVRNH-CEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA----NNCETSQYVVEVHGIDRKG 165 (318) Q Consensus 91 ~~~~i~~~~~-~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa----yG~ei~d~i~~V~~~d~~g 165 (318) ++.++++.+ ..++|+||+.|.+|.+++.++|+......+..+|+.|++..++.|. ||. +.|+|.++++++++| T Consensus 91 -l~~i~id~~~~~v~V~aGv~~~~l~~~l~~~G~~~~~~~~~~~g~gG~~~~~g~G~~s~~yG~-~~d~V~~~evV~~~G 168 (252) T 2bvf_A 91 -MNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGL-ASDNILGATLVTATG 168 (252) T ss_dssp -CCCEEEETTTTEEEEETTCBHHHHHHHHHTTTEEECCCSCTTSBHHHHHTTCCCCTTHHHHCC-GGGGEEEEEEECTTS T ss_pred -CCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHEEECCCCCCCCCCCCCEECCCCCCCCCCCCC-HHCCCCEEEEEECCC T ss_conf -898798278998999867745999998542003223676446544521213655555565123-100211799995599 Q ss_pred CEEEECCC---CCCCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 10000123---344310023224676200100235456 Q gi|254781095|r 166 NQHVIPRE---QLKYQYRSSEITKDLIITHVVLRGFPE 200 (318) Q Consensus 166 ~~~~l~~~---e~~f~YR~S~~~~~~iIl~a~l~l~~~ 200 (318) ++++.+++ |+.+++|.|. ..-.||++++|++.|- T Consensus 169 ~i~~~~~~~~~dLf~a~~Gs~-G~lGIIt~~tlkl~P~ 205 (252) T 2bvf_A 169 DVIYCSDDERPELFWAVRGAG-PNFGVVTEVEVQLYEL 205 (252) T ss_dssp CEEEEESSSSHHHHHHHHHHG-GGTCEEEEEEEEEEEG T ss_pred CEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEEEEECE T ss_conf 799973888866999999607-9986016999998615 No 10 >>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} (C:1-176) Probab=99.66 E-value=9.8e-18 Score=131.96 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=129.3 Q ss_pred CEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECCCEE-CCHHHHCCC-CCCCEEEECCCCCCCCCEEEHH Q ss_conf 148899996898999999998562998999847520366--048840-220221123-4431133026651233112215 Q gi|254781095|r 37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDAGIR-GVVLRLSNA-GFSNIEVRNHCEMIVGARCSGK 112 (318) Q Consensus 37 G~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~~~~-G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~ 112 (318) |++..|+.|.|.+|+.+++.... ....++++||++.+ +++..+ +++|++++. .++.++.+++ .+++|||+.+. T Consensus 3 g~~~~~~~P~s~~el~~ll~~~~--~~~~~~aGGT~l~~~~~~~~~~~~~vI~l~~i~el~~i~~~~~-~l~iGA~~tl~ 79 (176) T 1n62_C 3 PGSFDYHRPKSIADAVALLTKLG--EDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGT-DVVIGAMTTQH 79 (176) T ss_dssp CCCCEEECCSSHHHHHHHHHHHG--GGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETT-EEEEETTCBHH T ss_pred CCCCCEECCCCHHHHHHHHHHCC--CCCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-EEEEEECCCHH T ss_conf 89865568899999999998519--9988999455499998648889996998977887755998686-69994056299 Q ss_pred HHHHHHHHHHCCCH--HCCCCHHH-------HHHHHHCCCCCCCCCEEEEEEEEEEEECCCCC-EEEECCCCCCCCCCCC Q ss_conf 67777887520120--00387256-------63243115732158313456664344112321-0000123344310023 Q gi|254781095|r 113 SLANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETSQYVVEVHGIDRKGN-QHVIPREQLKYQYRSS 182 (318) Q Consensus 113 ~l~~~~~~~gl~Gl--E~l~gIPG-------TVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~-~~~l~~~e~~f~YR~S 182 (318) ++.+.+...+..+. |++..|++ ||||+++||+++++..+.+....+++...+++ .++++.+|+.++||++ T Consensus 80 ~l~~~~~~~~~~~~l~~~~~~~a~~~vRn~aTiGGni~~~~~~~d~~~~l~al~a~v~~~~~~g~r~~~~~df~~~~~~~ 159 (176) T 1n62_C 80 ALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFT 159 (176) T ss_dssp HHHHCHHHHHHCHHHHHHHTTSSCHHHHHHCBHHHHHHSCCTTCSHHHHHHHHTCEEEEEETTEEEEEEHHHHEEETTEE T ss_pred HHHCCHHHHHHCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 88609566666769999998528876552202246101578754442045540442487448974224421245773223 Q ss_pred CCCCCCCEEEEECCCCC Q ss_conf 22467620010023545 Q gi|254781095|r 183 EITKDLIITHVVLRGFP 199 (318) Q Consensus 183 ~~~~~~iIl~a~l~l~~ 199 (318) .++.+++|+++++...| T Consensus 160 ~l~~~eii~~v~ip~~p 176 (176) T 1n62_C 160 AIEPGELLTAIRIPVPP 176 (176) T ss_dssp SCCTTCEEEEEEEECCC T ss_pred CCCCCCEEEEEEECCCC T ss_conf 35754347999922477 No 11 >>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* (A:1-182) Probab=99.64 E-value=3.9e-16 Score=121.87 Aligned_cols=169 Identities=17% Similarity=0.117 Sum_probs=129.1 Q ss_pred CCCCCCCCC--CCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCEECCH-HHHCCCCCCCEEEE-CC Q ss_conf 880015225--766148899996898999999998562998999847520366048840220-22112344311330-26 Q gi|254781095|r 25 FPLKQITWF--RTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVV-LRLSNAGFSNIEVR-NH 100 (318) Q Consensus 25 ~~L~~~tt~--rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~D~~~~G~v-I~l~~~~~~~i~~~-~~ 100 (318) .....|++| +.+++++.++.|+|++|++++++++ .|+.+.|+|+|....+...++.+ |.++.. ...++.+ +. T Consensus 5 ~~~~~~~~~~~~~~~~p~~v~~P~s~~ev~~~v~~a---~~v~~~g~g~~~~~~~~~~~~~vii~~~~~-~~~~~~d~~~ 80 (182) T 2vfr_A 5 MSDITVTNWAGNITYTAKELLRPHSLDALRALVADS---ARVRVLGSGHSFNEIAEPGDGGVLLSLAGL-PSVVDVDTAA 80 (182) T ss_dssp CCCCCCBCSSSSCBCSCSSCBCCSSHHHHHHHHHHC---SSEEECSSCCCCSSTTCCCTTCEEECSTTS-CCCEEEETTT T ss_pred CCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCEEEEECCCC-CCCEEECCCC T ss_conf 568776037997022889899659999999999839---977998088688887687898199987468-9846981899 Q ss_pred CCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC----CCCEEEEEEEEEEEECCCCCEE-EECCCCC Q ss_conf 6512331122156777788752012000387256632431157321----5831345666434411232100-0012334 Q gi|254781095|r 101 CEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA----NNCETSQYVVEVHGIDRKGNQH-VIPREQL 175 (318) Q Consensus 101 ~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa----yG~ei~d~i~~V~~~d~~g~~~-~l~~~e~ 175 (318) ..++++||+.+.++.+.+.++||.--...+..+.+.|++..++.|. || .+.|.+.++++++.+|++. .-..+|+ T Consensus 81 ~~v~v~aGv~~~~l~~~l~~~gl~~~~~~~~~~~~gG~~~~~~~g~~~~~~G-~~~d~V~~~~iV~~~G~~~~~~~~~dl 159 (182) T 2vfr_A 81 RTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGSGVGNG-SLASVVREVELVTADGSTVVIARGDER 159 (182) T ss_dssp TEEEEETTCBHHHHHHHHHHTTEECSCCCSSSCSBHHHHHHHTCCCCCTTCC-CGGGGEEEEEEECTTSCEEEEETTSTT T ss_pred CEEEECCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCEEEECCCCCE T ss_conf 9899908849799888876214434657645741430210145567777877-632022554785169946882488620 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCC Q ss_conf 431002322467620010023545 Q gi|254781095|r 176 KYQYRSSEITKDLIITHVVLRGFP 199 (318) Q Consensus 176 ~f~YR~S~~~~~~iIl~a~l~l~~ 199 (318) .+++|.|. ..-.||++++|++.| T Consensus 160 ~~a~~gs~-G~~GIVt~~~l~l~P 182 (182) T 2vfr_A 160 FGGAVTSL-GALGVVTSLTLDLEP 182 (182) T ss_dssp GGGTSSCT-TTTCEEEEEEEECEE T ss_pred EEECCCCC-CCCCEEEEEEEEECC T ss_conf 00004555-565102799999605 No 12 >>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:1-66,A:320-340) Probab=99.63 E-value=7.5e-16 Score=120.05 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=60.2 Q ss_pred CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHHHCCC Q ss_conf 88001522576614889999689899999999856-2998999847520366048840220221123 Q gi|254781095|r 25 FPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLRLSNA 90 (318) Q Consensus 25 ~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~l~~~ 90 (318) +||++|||||+||+|++|++|+|.+||.+++++++ ++.|+++||+|||+||+| +|+|+||++..+ T Consensus 1 ~sLs~~tTf~Igg~A~~~i~p~s~eeL~~ll~~~~~~~~p~~ILG~GSNlLf~d-~f~GiVI~~~~k 66 (87) T 1uxy_A 1 HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLE-DYRGTVIINRIK 66 (87) T ss_dssp CBCGGGSTTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECS-CEEEEEEEECCC T ss_pred CCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEC-CCCCEEEEECCC T ss_conf 988666408768180399997999999999998887699889992848899947-970449998888 No 13 >>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:67-190) Probab=99.59 E-value=1.3e-15 Score=118.61 Aligned_cols=108 Identities=26% Similarity=0.373 Sum_probs=99.3 Q ss_pred CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCCCCC Q ss_conf 2665123311221567777887520120003872566324311573215831345666434411-232100001233443 Q gi|254781095|r 99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID-RKGNQHVIPREQLKY 177 (318) Q Consensus 99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d-~~g~~~~l~~~e~~f 177 (318) ++..++|+||+.|.+|.+++.++||.+.++.+.+||||||++.||++.|++++.|++.++++++ .+|+++++.+++.++ T Consensus 9 ~~~~v~ve~Gv~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~~~~~~g~~~~~~~~~~~v~~~~G~~~~~~~~~~~~ 88 (124) T 1uxy_A 9 DAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRF 88 (124) T ss_dssp SEEEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCSBGGGTTTTTCEETTEEGGGTEEEEEEEETTTTEEEEEETGGGTC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHCC T ss_conf 42014532146479999999876314425425534554355120123303556665545210011488488636013100 Q ss_pred CCCCCCCCC---C-CCEEEEECCCCCCCCCCCH Q ss_conf 100232246---7-6200100235456543100 Q gi|254781095|r 178 QYRSSEITK---D-LIITHVVLRGFPESQNIIS 206 (318) Q Consensus 178 ~YR~S~~~~---~-~iIl~a~l~l~~~~~~~i~ 206 (318) +|+++.+.. . .||++++|++.|..+..++ T Consensus 89 ~~~~~~~~~~g~~~gIVt~~~l~l~p~~~~~i~ 121 (124) T 1uxy_A 89 GYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLT 121 (124) T ss_dssp BTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCC T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHH T ss_conf 211132563234650489999851655423220 No 14 >>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} (A:1-245,A:495-534) Probab=99.57 E-value=3.8e-15 Score=115.58 Aligned_cols=192 Identities=15% Similarity=0.135 Sum_probs=141.8 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHH-CC---CCEEEECCCCEEEEECCCEECCHHHHCCCCC----CCEEEE-CCCCCC Q ss_conf 76614889999689899999999856-29---9899984752036604884022022112344----311330-266512 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SD---IPITIVGLGSNILVRDAGIRGVVLRLSNAGF----SNIEVR-NHCEMI 104 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~---~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~----~~i~~~-~~~~i~ 104 (318) .....+..++.|+|++|+++++++++ ++ +|+.+.|+|++..-.....+|++|.++.... ..++.+ ++..++ T Consensus 64 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~g~~~~~v~~rg~Ghs~~g~~~~~~gvvid~~~l~~~~~~~~~~id~~~~~v~ 143 (285) T 1w1o_A 64 ITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVD 143 (285) T ss_dssp SCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTTSEEEEGGGGGCSSSSCSEEECTTSSEEE T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCEEE T ss_conf 64677887995599999999999998489999569998998088887658898999885567654567346738998899 Q ss_pred CCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCC----CEEEEEEEEEEEECCCCCEEEECCC---CCCC Q ss_conf 33112215677778875201200038725663243115732158----3134566643441123210000123---3443 Q gi|254781095|r 105 VGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANN----CETSQYVVEVHGIDRKGNQHVIPRE---QLKY 177 (318) Q Consensus 105 v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG----~ei~d~i~~V~~~d~~g~~~~l~~~---e~~f 177 (318) |+||+.+.++.+++.++|+.-....+..++||||.+.+|++.+. +.+.|.+.++++++++|++.+++++ |+.+ T Consensus 144 V~aGv~~~~l~~~L~~~Gl~~~~~~~~~~~tvGG~i~~g~~G~~s~~~G~~~d~v~~~~vV~~~G~vv~~s~~~~~dLf~ 223 (285) T 1w1o_A 144 AGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 223 (285) T ss_dssp EETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHH T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCCCCCCCC T ss_conf 96773799999999976975367888887310443221344554543010100122157871687679952544323333 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCH-------HHHHHCCCCCCCCCCCCCEE Q ss_conf 10023224676200100235456543100-------12221001100015566704 Q gi|254781095|r 178 QYRSSEITKDLIITHVVLRGFPESQNIIS-------AAIANVCHHRETVQPIKEKT 226 (318) Q Consensus 178 ~YR~S~~~~~~iIl~a~l~l~~~~~~~i~-------~~~~~~~~~R~~~qP~~~~s 226 (318) .+|.+.= .-.||++++|++.|...+... ++...+.+.++.-.|...-| T Consensus 224 a~~G~~G-~lGIVt~~tlkl~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (285) T 1w1o_A 224 AVLGGLG-QFGVITRARIAVEPAHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLS 278 (285) T ss_dssp HHTTCTT-CSEEEEEEEEEEEECCSSHHHHHHHHCHHHHHHHHHHHHHHCTTCCBC T ss_pred CCCCCCC-CCCEEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC T ss_conf 3346788-652036777631478468999999869999999999999869511179 No 15 >>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* (A:1-218,A:456-495) Probab=99.57 E-value=5.1e-15 Score=114.79 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=135.7 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEEC--CCEECCHHHHCCCCCCCEEEEC-CCCCCCCCEE Q ss_conf 76614889999689899999999856-299899984752036604--8840220221123443113302-6651233112 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRD--AGIRGVVLRLSNAGFSNIEVRN-HCEMIVGARC 109 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D--~~~~G~vI~l~~~~~~~i~~~~-~~~i~v~AG~ 109 (318) +.......++.|+|++|++++++++. +++|+.+.|+|++.--.. .+-.+++|.++. ++.++.+. ...++|+||+ T Consensus 41 ~~~~~P~~Vv~P~s~eev~~~Vk~a~~~~~~v~~rGgGhs~~g~~~~~~~~~ivIdl~~--l~~i~~d~~~~~v~V~aGv 118 (258) T 3fw9_A 41 SLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMN--LNRVSIDLESETAWVESGS 118 (258) T ss_dssp TTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTT--CCCEEEETTTTEEEEETTC T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC--CCCEEEECCCCEEEEECCC T ss_conf 88898777997099999999999999879759998699678887165899989999877--9988984799989996587 Q ss_pred EHHHHHHHHHHHHCCCHHCCCC--HHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEEEECC--CCCCCCCC Q ss_conf 2156777788752012000387--256632431157321-----58313456664344112321000012--33443100 Q gi|254781095|r 110 SGKSLANSALRHGIGGFHFFYG--IPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQHVIPR--EQLKYQYR 180 (318) Q Consensus 110 ~~~~l~~~~~~~gl~GlE~l~g--IPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~~l~~--~e~~f~YR 180 (318) .|.+|..++.++|+. +.+..+ -..|+||++.+|+.. || .++|+|.++++++++|++.+.+. .|+.|++| T Consensus 119 ~~~~l~~~L~~~g~~-l~~~~g~~~~~tigG~ia~~~~G~~s~~~G-~~~d~v~~~~vV~~dG~vv~~~~~~~dl~~a~~ 196 (258) T 3fw9_A 119 TLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYG-LAADNVVDAILIDANGAILDRQAMGEDVFWAIR 196 (258) T ss_dssp BHHHHHHHHHHHCSS-EECCCCSCTTCBHHHHHHTCCCCTTHHHHC-CGGGGEEEEEEECTTCCEECHHHHCHHHHHHHT T ss_pred CHHHHHHHHHHHCCC-CCCCCCCCCCCEEEEEECCCCCCCCCCEEC-CHHHEEEEEEEECCCCEEEECCCCCCHHHHHHH T ss_conf 999999999980880-466875688534441214544588742204-242238999998269809984688716799998 Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCH-------HHHHHCCCCCCCCCCCCCEEEEEEEECCCCC Q ss_conf 23224676200100235456543100-------1222100110001556670465889727898 Q gi|254781095|r 181 SSEITKDLIITHVVLRGFPESQNIIS-------AAIANVCHHRETVQPIKEKTGGSTFKNPTGH 237 (318) Q Consensus 181 ~S~~~~~~iIl~a~l~l~~~~~~~i~-------~~~~~~~~~R~~~qP~~~~s~GSvFkNP~~~ 237 (318) ......-.||+++++++.|.....-. ...+++.+.+....|.+ +|.||.-. T Consensus 197 ~gs~G~lGIIt~vtl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 254 (258) T 3fw9_A 197 GGGGGVWGAIYAWKIKLLPVPEISRSWGESYFLSNYERLIRAKTLIDPNN------VFNHPQSI 254 (258) T ss_dssp TSCTTSSCEEEEEEEECEECCSHHHHHHHHHHGGGHHHHHHHHHHHCTTC------CSCCTTCC T ss_pred HHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCC T ss_conf 54120144327999995448973467898765778999999999769343------27988588 No 16 >>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:1-220) Probab=99.54 E-value=4e-14 Score=109.17 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=121.8 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHHH-------HCCCCCCCEEEE-CCCCCC Q ss_conf 76614889999689899999999856-299899984752036604884022022-------112344311330-266512 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVLR-------LSNAGFSNIEVR-NHCEMI 104 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI~-------l~~~~~~~i~~~-~~~~i~ 104 (318) ++...+.+++.|+|++|++++++++. ++.|+.+.|+|++.....-...+.++. +..+ ...++.+ +...++ T Consensus 31 ~~~~~p~~vv~P~t~~eV~~~v~~a~~~~~~v~~~g~Ghs~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~v~ 109 (220) T 2i0k_A 31 EIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLN-GITVNTGGPVATVT 109 (220) T ss_dssp SSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSC-CEEEECCSSSCEEE T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHCCCC-CEEEEECCCCCEEE T ss_conf 73568888995799999999999999879839998898576657347998733799862122776-54554448998899 Q ss_pred CCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC--------CC------CEEEEEEEEEEEECCCCCEEEE Q ss_conf 331122156777788752012000387256632431157321--------58------3134566643441123210000 Q gi|254781095|r 105 VGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA--------NN------CETSQYVVEVHGIDRKGNQHVI 170 (318) Q Consensus 105 v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa--------yG------~ei~d~i~~V~~~d~~g~~~~l 170 (318) ++||+.+.++.+++.++|+.--......+.++||+..++++. +| +.+.|+|.++++++.+|++.++ T Consensus 110 v~aGv~~~~l~~~l~~~g~~~~~~~~~~~~s~~g~~~~~~~~~G~~~~~~~G~~~~~~g~~~d~v~~~~vv~~~G~~~~~ 189 (220) T 2i0k_A 110 AGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYAL 189 (220) T ss_dssp EETTSBHHHHHHHHHHTTEECSSCCSCTTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSSSEEE T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCEEEE T ss_conf 90785938999999853663666634552112575445566542016745565422454153326568999369988996 Q ss_pred CC-CCCCCCCCCCCCCC-CCCEEEEECCCCC Q ss_conf 12-33443100232246-7620010023545 Q gi|254781095|r 171 PR-EQLKYQYRSSEITK-DLIITHVVLRGFP 199 (318) Q Consensus 171 ~~-~e~~f~YR~S~~~~-~~iIl~a~l~l~~ 199 (318) ++ ++.++.+....-.. ..||++++|++.| T Consensus 190 ~~~~~~~~~l~~a~~gg~~Giit~~t~~~~P 220 (220) T 2i0k_A 190 ETYQRNDPRITPLLTNLGRCFLTSVTMQAGP 220 (220) T ss_dssp EEEETTSGGGHHHHSCTTSSCEEEEEEECEE T ss_pred CCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE T ss_conf 4888821888973889873025679998740 No 17 >>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:273-319) Probab=99.50 E-value=3.3e-14 Score=109.70 Aligned_cols=46 Identities=33% Similarity=0.529 Sum_probs=45.5 Q ss_pred CCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8820667787156770899689979999999999999999998475 Q gi|254781095|r 249 RGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI 294 (318) Q Consensus 249 KG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi 294 (318) ||+++|+|+||+||||||||.|+||++|+++|+++||+.|+++||| T Consensus 1 KG~~~G~a~vs~khA~~lvN~g~at~~dv~~L~~~v~~~V~~~fGI 46 (47) T 1uxy_A 1 KGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNV 46 (47) T ss_dssp TTCEETTEEECSSCTTEEEECSSCCHHHHHHHHHHHHHHHHHHHSC T ss_pred CCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 8971469698167886899899999999999999999999998898 No 18 >>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:83-206) Probab=99.50 E-value=2.7e-14 Score=110.19 Aligned_cols=108 Identities=26% Similarity=0.303 Sum_probs=99.6 Q ss_pred CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCCCCC Q ss_conf 2665123311221567777887520120003872566324311573215831345666434411-232100001233443 Q gi|254781095|r 99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID-RKGNQHVIPREQLKY 177 (318) Q Consensus 99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d-~~g~~~~l~~~e~~f 177 (318) ++..++|+||+.|.+|.+++.++||...++.++.|+||||++.||++++++.+.|++.++++++ .+|+..++..++..+ T Consensus 9 ~~~~v~veaGv~~~~l~~~l~~~gl~~~~~~~~~~~tiGG~~~~~~~~~~g~~~~~v~~~~~v~~~~G~~~~~~~~~~~~ 88 (124) T 3i99_A 9 DYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTVKRLTXEECQF 88 (124) T ss_dssp SEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCSBGGGTTTTTCEETTEEGGGTEEEEEEEETTTTEEEEEETGGGCC T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCC T ss_conf 66347997226518999999877325515643056554366221223443213221001266531588376313200014 Q ss_pred CCCCCCCCC----CCCEEEEECCCCCCCCCCCH Q ss_conf 100232246----76200100235456543100 Q gi|254781095|r 178 QYRSSEITK----DLIITHVVLRGFPESQNIIS 206 (318) Q Consensus 178 ~YR~S~~~~----~~iIl~a~l~l~~~~~~~i~ 206 (318) .|+++.+.. ..||++++|++.|..+..++ T Consensus 89 ~~l~~~~~g~~G~~GiIt~~tl~l~p~~~~~i~ 121 (124) T 3i99_A 89 GYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQ 121 (124) T ss_dssp BTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCC T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHH T ss_conf 565565554456633789999864467750222 No 19 >>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:1-99,A:305-326) Probab=99.16 E-value=1.4e-10 Score=86.68 Aligned_cols=82 Identities=32% Similarity=0.595 Sum_probs=71.5 Q ss_pred HHHHHHHHHHCC-EEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECCHH Q ss_conf 999999875066-2775488001522576614889999689899999999856-29989998475203660488402202 Q gi|254781095|r 8 RLLRERGKQLRG-KFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGVVL 85 (318) Q Consensus 8 ~~l~~~~~~~~g-~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~vI 85 (318) ..+.++...+.+ .+..+.++++|+++++||.++.+++|++.+|+.+++++|. +++|+.+.|+|||+.+.+.+.+|+|| T Consensus 17 ~~~~~L~~~l~~~~i~~d~~l~~~~t~~~~~~p~avV~P~s~eeV~~iv~~a~~~~ipv~~rGgGts~~g~~~~~~g~VI 96 (121) T 1hsk_A 17 DIYQALQQLIPNEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVI 96 (121) T ss_dssp HHHHHHHHHSCGGGEEEEEEGGGTCTTSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTTCEEEEEE T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCEEEECCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEEEEEE T ss_conf 99999997685355880797653645003819789997699999999999998759988998584369996698669999 Q ss_pred HHCC Q ss_conf 2112 Q gi|254781095|r 86 RLSN 89 (318) Q Consensus 86 ~l~~ 89 (318) .++. T Consensus 97 ~ls~ 100 (121) T 1hsk_A 97 SLLL 100 (121) T ss_dssp ECTC T ss_pred EECC T ss_conf 8322 No 20 >>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (C:1-176) Probab=98.93 E-value=6.1e-10 Score=82.72 Aligned_cols=156 Identities=11% Similarity=0.117 Sum_probs=113.0 Q ss_pred EEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECCC-EECCHHHHCCC-CCCCEEEECCCCCCCCCEEEHHH Q ss_conf 48899996898999999998562998999847520366--0488-40220221123-44311330266512331122156 Q gi|254781095|r 38 NAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDAG-IRGVVLRLSNA-GFSNIEVRNHCEMIVGARCSGKS 113 (318) Q Consensus 38 ~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~~-~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~~ 113 (318) +.-.|+.|.|.+|+.+++.... -...++++||.+.. .++. ..+.+|.++.- .+..++..++ .+++||++++.+ T Consensus 4 ~~~~~~~P~sl~e~~~ll~~~~--~~~~~vaGgT~l~~~~~~~~~~~~~~Idi~~i~eL~~i~~~~~-~l~iGA~vtl~~ 80 (176) T 1ffv_C 4 PRFEYHAPKSVGEAVALLGQLG--SDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS-TVVIGAMTVEND 80 (176) T ss_dssp CCCEEECCSSHHHHHHHHHHHG--GGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETT-EEEEETTCBHHH T ss_pred CCCCEECCCCHHHHHHHHHHHC--CCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-CEEEECCHHHHH T ss_conf 9853669899999999998519--9988997375689987327789897998998715461687178-258602012566 Q ss_pred HHHHHHHHHCCCH--HCCCCHHH-------HHHHHHCCCCCCCCCEEEEEEE--EEEEECCCCCEEEECCCCCCCCCCCC Q ss_conf 7777887520120--00387256-------6324311573215831345666--43441123210000123344310023 Q gi|254781095|r 114 LANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETSQYVV--EVHGIDRKGNQHVIPREQLKYQYRSS 182 (318) Q Consensus 114 l~~~~~~~gl~Gl--E~l~gIPG-------TVGGAi~mNAGayG~ei~d~i~--~V~~~d~~g~~~~l~~~e~~f~YR~S 182 (318) +.+.....+.... +.+..|.+ ||||.++|...+......-... .|++.+.+ ..++++-+|+-.+||.+ T Consensus 81 l~~~~~~~~~~~~l~~~~~~ia~~~iRn~aTiGGNi~~~~~~sD~~~~l~al~A~v~i~~~~-g~r~v~~~df~~~~~~~ 159 (176) T 1ffv_C 81 LISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGPN-GRRTVPADGFFLGTYMT 159 (176) T ss_dssp HHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTTCSHHHHHHHTTCEEEEEETT-EEEEEESTTTEEETTEE T ss_pred HHCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEECCC-CCEEEEECCCCCCCCCC T ss_conf 64183444455699999873288540777674485445775321788987521124531037-84598400012453223 Q ss_pred CCCCCCCEEEEECCC Q ss_conf 224676200100235 Q gi|254781095|r 183 EITKDLIITHVVLRG 197 (318) Q Consensus 183 ~~~~~~iIl~a~l~l 197 (318) .++.+.+++++.+.. T Consensus 160 ~l~~~eii~~v~iP~ 174 (176) T 1ffv_C 160 LLEENEVMVEIRVPA 174 (176) T ss_dssp SCCTTCEEEEEEEEC T ss_pred CCCCCCEEEEEECCC T ss_conf 000163338999146 No 21 >>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:96-211,A:452-503) Probab=98.83 E-value=3.4e-09 Score=78.02 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=87.2 Q ss_pred CCCEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCC----CEEEEEEEEEEEECCCCCE Q ss_conf 431133026651233112215677778875201200038725663243115732158----3134566643441123210 Q gi|254781095|r 92 FSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANN----CETSQYVVEVHGIDRKGNQ 167 (318) Q Consensus 92 ~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG----~ei~d~i~~V~~~d~~g~~ 167 (318) |+.|+.+++..++|+||+.|.++.+++.++||.=.-.-+.-+.|+||++.++++.++ +.++|.+.++++++++|++ T Consensus 2 Mn~I~iD~~~~v~VeaGvt~~eL~~~L~~~Gl~l~~~ps~~~~TvGG~ia~gg~G~~s~~yG~~~D~V~~leVV~~dGei 81 (168) T 1zr6_A 2 MYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASI 81 (168) T ss_dssp CCCEEECTTSCEEEETTCBHHHHHHHHHHTTSEECCCCSCTTSBHHHHHHHCCCSTTHHHHCCGGGGEEEEEEECTTSCE T ss_pred CCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCE T ss_conf 89879888986797244329999999998639867874678866551221365432224554411120147887168868 Q ss_pred EEEC---CCCCCCCCCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 0001---2334431002322467620010023545654 Q gi|254781095|r 168 HVIP---REQLKYQYRSSEITKDLIITHVVLRGFPESQ 202 (318) Q Consensus 168 ~~l~---~~e~~f~YR~S~~~~~~iIl~a~l~l~~~~~ 202 (318) .+.+ ..|+.+.+|.| +..-.||++++|++.|... T Consensus 82 ~~~~~~~~~DL~~a~~Gs-~G~LGIIT~vtLkl~P~~~ 118 (168) T 1zr6_A 82 VHVSETENADLFWALRGG-GGGFAIVSEFEFNTFEAGN 118 (168) T ss_dssp EEEBTTBSHHHHHHHTTC-CSSSCEEEEEEECCEECGG T ss_pred EEECCCCCHHHHHHHHHH-HCCCCCEEEEEEEEECCHH T ss_conf 996699886689998764-3005512899999761778 No 22 >>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:116-238,A:483-524) Probab=98.39 E-value=7.4e-08 Score=69.53 Aligned_cols=137 Identities=10% Similarity=0.072 Sum_probs=92.9 Q ss_pred CCEEEEC-CCCCCCCCEEEHHHHHHHHHHH-HCCCHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCC Q ss_conf 3113302-6651233112215677778875-2012000387256632431157321-----5831345666434411232 Q gi|254781095|r 93 SNIEVRN-HCEMIVGARCSGKSLANSALRH-GIGGFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKG 165 (318) Q Consensus 93 ~~i~~~~-~~~i~v~AG~~~~~l~~~~~~~-gl~GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g 165 (318) +.++++. ...++|++|+.+.++.+++.++ ++.....-+.--.||||++.+|++. ||. .+|++.++++++++| T Consensus 8 ~ii~id~~~~~v~VeaGv~~~dl~~~ll~~~gl~~p~~~s~~~~TiGG~ia~g~~G~~s~~yG~-~~d~v~~levVl~dG 86 (165) T 2exr_A 8 GYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGP-QTSNVTELDVVTGNG 86 (165) T ss_dssp EECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEECSCCCSCCSSBHHHHHTTCCCCTTHHHHCC-GGGSEEEEEEEETTS T ss_pred CCEEECCCCCEEEEECCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEECCCC T ss_conf 6135428899899907959999999999849864678988786603322345422223332022-222135789984888 Q ss_pred CEEEECCCC---CCCCCCCCCCCCCCCEEEEECCCCCCCC--CCCH----HHHHHCCCCCCCCCCCCCEEEEEEE Q ss_conf 100001233---4431002322467620010023545654--3100----1222100110001556670465889 Q gi|254781095|r 166 NQHVIPREQ---LKYQYRSSEITKDLIITHVVLRGFPESQ--NIIS----AAIANVCHHRETVQPIKEKTGGSTF 231 (318) Q Consensus 166 ~~~~l~~~e---~~f~YR~S~~~~~~iIl~a~l~l~~~~~--~~i~----~~~~~~~~~R~~~qP~~~~s~GSvF 231 (318) ++.+.++.+ +....|.| ...-.||++++|++.|.-+ ++-. .+..++++.+....|...-+-|.-| T Consensus 87 ~i~~~~~~~~~dlf~a~~Gs-~G~lGIIT~vtlrl~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165) T 2exr_A 87 DVVTCSEIENSELFFSVLGG-LGQFGIITRARVLLQPAYKSQEEWIRHFGNRWSRFVDRKAXFDPXAILSPGQKI 160 (165) T ss_dssp CEEEEESSSSHHHHHHHTTC-TTSSEEEEEEEEEEEECCCSHHHHHHHHGGGHHHHHHHHHHHCTTCCBCGGGCS T ss_pred CEEEEECCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 67999644443322332246-674422147887223684587999998889999999999976953368999887 No 23 >>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (C:1-174) Probab=98.39 E-value=6.9e-08 Score=69.72 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=105.8 Q ss_pred EEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CCC-EECCHHHHCCC-CCCCEEEECCCCCCCCCEEEHHH Q ss_conf 488999968989999999985629989998475203660--488-40220221123-44311330266512331122156 Q gi|254781095|r 38 NAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DAG-IRGVVLRLSNA-GFSNIEVRNHCEMIVGARCSGKS 113 (318) Q Consensus 38 ~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~~-~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~~ 113 (318) ++..|+.|.|.+|+.+++...+ ...++++|+.+.+. ++. ....+|.+..- .+..++..++ .+++||++++.+ T Consensus 4 ~~~~~~~P~sl~ea~~ll~~~~---~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~i~~~~~-~l~iGA~vtl~~ 79 (174) T 1t3q_C 4 PAFSYRAPASLQEVIQVLADDP---DARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAG-ILSVGAMVTHFR 79 (174) T ss_dssp CCCEEECCSSHHHHHHHHHHCT---TCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETT-EEEEETTCBHHH T ss_pred CCCEEECCCCHHHHHHHHHHCC---CCEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCC-CEEECCCHHHHH T ss_conf 8830548899999999997689---987998673799998548789986888667755630675388-445323201567 Q ss_pred HHHHHH-HHHCCCHHCC-CCHH-------HHHHHHHCCCCCCCCCEEEEEE--EEEEEECCCCCEEEECCCCCCCCCCCC Q ss_conf 777788-7520120003-8725-------6632431157321583134566--643441123210000123344310023 Q gi|254781095|r 114 LANSAL-RHGIGGFHFF-YGIP-------GSIGGAAYMNAGANNCETSQYV--VEVHGIDRKGNQHVIPREQLKYQYRSS 182 (318) Q Consensus 114 l~~~~~-~~gl~GlE~l-~gIP-------GTVGGAi~mNAGayG~ei~d~i--~~V~~~d~~g~~~~l~~~e~~f~YR~S 182 (318) +..... ...+..|..+ ..|. |||||.++++..+...-..-.. -.|++...+| .++++-+|+-.+|+.+ T Consensus 80 l~~~~~~~~~~~~L~~~~~~ia~~~iRn~aTiGGni~~~~~~sD~~~~l~al~A~v~i~~~~g-~r~i~l~df~~~~~~~ 158 (174) T 1t3q_C 80 NKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAG-VRSVSATDFMKGHYFT 158 (174) T ss_dssp HHHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTCTTCHHHHHHHHTTCEEEEEETTE-EEEEEHHHHEEETTEE T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEHHHCCCCCCCC T ss_conf 664144443554899998741895316999844641113433236789998777774035643-1244101125675334 Q ss_pred CCCCCCCEEEEECCC Q ss_conf 224676200100235 Q gi|254781095|r 183 EITKDLIITHVVLRG 197 (318) Q Consensus 183 ~~~~~~iIl~a~l~l 197 (318) .++.+.+++++.+.. T Consensus 159 ~l~~~eii~~i~iP~ 173 (174) T 1t3q_C 159 DLEAGEVLVRVEIPI 173 (174) T ss_dssp SCCTTCEEEEEEEEC T ss_pred CCCCCCEEEEEEEEE T ss_conf 234663379999987 No 24 >>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:194-315,A:549-584) Probab=98.15 E-value=1.8e-06 Score=60.81 Aligned_cols=129 Identities=15% Similarity=0.062 Sum_probs=85.3 Q ss_pred EEE-CCCCCCCCCEEEHHHHHHHHHHHHCC-CHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEE Q ss_conf 330-26651233112215677778875201-2000387256632431157321-----5831345666434411232100 Q gi|254781095|r 96 EVR-NHCEMIVGARCSGKSLANSALRHGIG-GFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQH 168 (318) Q Consensus 96 ~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~ 168 (318) +++ ++..++|++|+.+.++.+++.++|+. .....+.-..|+||++.+|+.. ||. .+|++.++++++++|++. T Consensus 6 ~id~~~~~v~Ve~Gvt~~~l~~~l~~~Gl~~~~~~~~~~~~tigG~ia~~~~G~~s~~~G~-~~d~V~~~~iV~~dG~v~ 84 (158) T 2uuu_A 6 WVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGD-IEDMAVSFRTVTPTGTLE 84 (158) T ss_dssp EEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHHTCCCTTHHHHCC-HHHHEEEEEEEETTEEEC T ss_pred EECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECC-CCCCHHHCEEECCCCCEE T ss_conf 9848889899965048999999999829946788776555652047433788788225436-554543405888899866 Q ss_pred EECCC------CCCCCCCCCCCCCCCCEEEEECCCCCCCCCC------CHHHHHHCCCCCCCCCCCCCEE Q ss_conf 00123------3443100232246762001002354565431------0012221001100015566704 Q gi|254781095|r 169 VIPRE------QLKYQYRSSEITKDLIITHVVLRGFPESQNI------ISAAIANVCHHRETVQPIKEKT 226 (318) Q Consensus 169 ~l~~~------e~~f~YR~S~~~~~~iIl~a~l~l~~~~~~~------i~~~~~~~~~~R~~~qP~~~~s 226 (318) +.++. |+.+.-|.| ..--.||+++++++.|..+.. -++.++-..+.+..-.|.+.-| T Consensus 85 ~~~~~~~~~~~dL~~a~~Gs-~G~lGIVt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~k~~~dp~~~~n 153 (158) T 2uuu_A 85 LRNGARSGAGINYKHIILGS-EGTLGIITEAVMKVHAVPHVPWMTRYATRGWINVYRSLKETIDPKDICN 153 (158) T ss_dssp CC-------CCCTHHHHTTC-TTSSCEEEEEEEECEECC----------CTHHHHHHHHHHHHCTTCCBS T ss_pred ECCCCCCCCCCCHHHHHHCC-CCCCEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 30444567997878876426-6562799873110101347999998669999999999999849763789 No 25 >>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:113-241) Probab=98.09 E-value=5e-06 Score=57.99 Aligned_cols=104 Identities=8% Similarity=-0.046 Sum_probs=71.9 Q ss_pred EEEE-CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCC-CCHHHHHHHHHCCCCC-----CCCCEEEEEEEEEEEECCCCCE Q ss_conf 1330-2665123311221567777887520120003-8725663243115732-----1583134566643441123210 Q gi|254781095|r 95 IEVR-NHCEMIVGARCSGKSLANSALRHGIGGFHFF-YGIPGSIGGAAYMNAG-----ANNCETSQYVVEVHGIDRKGNQ 167 (318) Q Consensus 95 i~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l-~gIPGTVGGAi~mNAG-----ayG~ei~d~i~~V~~~d~~g~~ 167 (318) ++++ +...++|+||+.|.+|.+++.++|+. +-.. +.=.+||||++.+|+. .||. +.|.|.++++++++|++ T Consensus 4 i~id~~~~~v~v~~Gv~~~~l~~~l~~~gl~-~~~~~~~~~~tvgG~~~~~~~G~~~~~~G~-~~d~v~~~~vV~~~G~~ 81 (129) T 1wvf_A 4 IKIDPEMCYALVEPGVTFGQMYDYIQENNLP-VMLSFSAPSAIAGPVGNTMDRGVGYTPYGE-HFMMQCGMEVVLANGDV 81 (129) T ss_dssp EEEETTTTEEEECTTCCHHHHHHHHHHTTCS-EECCCCSSCTTCCHHHHHHTTCBCSSTTCB-GGGGEEEEEEECTTSCE T ss_pred CCCCCCCCEEEECHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCC T ss_conf 4358766647743001046654344421465-445766541353043110001233323343-34356763230245421 Q ss_pred EEECCCCCCC--------CCCCCC--C----CCCCCEEEEECCCCCC Q ss_conf 0001233443--------100232--2----4676200100235456 Q gi|254781095|r 168 HVIPREQLKY--------QYRSSE--I----TKDLIITHVVLRGFPE 200 (318) Q Consensus 168 ~~l~~~e~~f--------~YR~S~--~----~~~~iIl~a~l~l~~~ 200 (318) .+.++....- .-|.-. + -.--||+++++++.|. T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~g~~G~lGiit~~tl~~~p~ 128 (129) T 1wvf_A 82 YRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPK 128 (129) T ss_dssp EECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCC T ss_conf 11387545565322200124662244310368554300021136678 No 26 >>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} (A:1-114) Probab=98.04 E-value=3.3e-06 Score=59.07 Aligned_cols=101 Identities=16% Similarity=0.006 Sum_probs=72.5 Q ss_pred CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC----- Q ss_conf 266512331122156777788752012000387256632431157321583134566643441123210000123----- Q gi|254781095|r 99 NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPRE----- 173 (318) Q Consensus 99 ~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~----- 173 (318) +...++|++|+.+.+|.+++.++||.=--..+..+|++||+.....+.......|++.++++++++|++....+. T Consensus 6 ~~~~v~v~~Gv~~~~l~~~l~~~G~~~~~~~~~~~g~i~g~~~g~~~~~~g~~~~~v~~~~~v~~~g~v~~~~~~~~~~~ 85 (114) T 2yvs_A 6 ADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPGGVGGLVARGGFAQTFFFPAEVLGLTFRTPKGRRVRAGGVVVKNV 85 (114) T ss_dssp TTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTTHHHHHHHTTCSSBSSCGGGGEEEEEEECTTSCEEEEECSSCSSS T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCC T ss_conf 57989998998699999999977981288965466622355325776333662306989999991697678455332220 Q ss_pred ---CCCCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf ---344310023224676200100235456 Q gi|254781095|r 174 ---QLKYQYRSSEITKDLIITHVVLRGFPE 200 (318) Q Consensus 174 ---e~~f~YR~S~~~~~~iIl~a~l~l~~~ 200 (318) |+.+..+.|. ..--||+++++++.|. T Consensus 86 ~~~dl~~a~~Gs~-G~lGiit~~~l~~~PA 114 (114) T 2yvs_A 86 QGYDLVRLFVGSF-GLLGRAEEVVLRLRPG 114 (114) T ss_dssp SCSCHHHHHTTCT-TTTCEEEEEEEECEEC T ss_pred HHHHHHHHHCCCC-CCEEEEEEEEEEEEEC T ss_conf 0445566410677-7359999999998607 No 27 >>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:224-272) Probab=98.02 E-value=7.5e-07 Score=63.18 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.9 Q ss_pred EEEEEEECCC--------------------------CCCCHHHHHHCCC Q ss_conf 4658897278--------------------------9851000263186 Q gi|254781095|r 226 TGGSTFKNPT--------------------------GHSAWQLIEKSGC 248 (318) Q Consensus 226 s~GSvFkNP~--------------------------~~~A~~LIe~~Gl 248 (318) |||||||||. ..+|+||||+||| T Consensus 1 NaGSFFkNPiv~~~~~~~L~~~~p~~p~y~~~~g~~Kl~AaWLIe~~GL 49 (49) T 1uxy_A 1 NAGAFFKNPVVSAETAKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQL 49 (49) T ss_dssp EEEESBCCCEECHHHHHHHHHHSTTCCEEECTTSCEEECHHHHHHHTTC T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 7644553144317799998875777887411366425259999998464 No 28 >>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:127-273) Probab=98.00 E-value=9.4e-06 Score=56.24 Aligned_cols=84 Identities=10% Similarity=-0.115 Sum_probs=60.9 Q ss_pred EEEC-CCCCCCCCEEEHHHHHHHHHHHHCC-CHHCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEEEECCCCCEE Q ss_conf 3302-6651233112215677778875201-2000387256632431157321-----5831345666434411232100 Q gi|254781095|r 96 EVRN-HCEMIVGARCSGKSLANSALRHGIG-GFHFFYGIPGSIGGAAYMNAGA-----NNCETSQYVVEVHGIDRKGNQH 168 (318) Q Consensus 96 ~~~~-~~~i~v~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAi~mNAGa-----yG~ei~d~i~~V~~~d~~g~~~ 168 (318) +++. ..+++|+||+.|.+|.+++.++|+. +...-+.-..||||.+.+|+.. ||. ..|.|.++++++++|++. T Consensus 6 ~id~~~~~v~v~~Gv~~~~l~~~l~~~G~~~~~~~~~~~~~~vgG~~~~~~~g~~~~~~G~-~~d~v~~~~vV~~~G~~~ 84 (147) T 1e8g_A 6 EVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGD-HWMMHSGMEVVLANGELL 84 (147) T ss_dssp EEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHTTCBCSSTTCB-TGGGEEEEEEEETTSCEE T ss_pred EEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCEEEEEEEEECCCCEEE T ss_conf 8837999999968825999999999848956889998840666876433147777666786-420577899990797799 Q ss_pred EECCC---CCCCCCC Q ss_conf 00123---3443100 Q gi|254781095|r 169 VIPRE---QLKYQYR 180 (318) Q Consensus 169 ~l~~~---e~~f~YR 180 (318) +.+++ |..+..| T Consensus 85 ~~~~~~~~d~~~a~~ 99 (147) T 1e8g_A 85 RTGMGALPDPKRPET 99 (147) T ss_dssp ECGGGGSCCCCCGGG T ss_pred EECCCCCCCHHHHHC T ss_conf 816865431233320 No 29 >>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (B:1-216) Probab=98.00 E-value=2.7e-05 Score=53.34 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=95.8 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CC-CEECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHH Q ss_conf 8999968989999999985629989998475203660--48-84022022112-34431133026651233112215677 Q gi|254781095|r 40 EVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DA-GIRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLA 115 (318) Q Consensus 40 ~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~-~~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~ 115 (318) ..|+.|.|.+|+.+++ .+.|..++++|+.+... .+ ..+..+|.+.+ ..+..++..++..++.||++.+.++. T Consensus 7 ~~~~~P~sl~ea~~ll----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~I~eL~~i~~~~d~~l~IGA~vTl~~l~ 82 (216) T 1rm6_B 7 FRTHRPATLADAVNAL----AAEATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLEAIA 82 (216) T ss_dssp CEEECCSSHHHHHHHT----TSTTEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHHHHH T ss_pred CEEECCCCHHHHHHHH----CCCCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCEEEECCCCCHHHHH T ss_conf 4586899999999986----289995997575689998458789997998667811160697467518970026314443 Q ss_pred HHH-HHHHCCCH----HCCCCHH----HHHHHHHCCCCCCCCCEEEEEE------------------------------- Q ss_conf 778-87520120----0038725----6632431157321583134566------------------------------- Q gi|254781095|r 116 NSA-LRHGIGGF----HFFYGIP----GSIGGAAYMNAGANNCETSQYV------------------------------- 155 (318) Q Consensus 116 ~~~-~~~gl~Gl----E~l~gIP----GTVGGAi~mNAGayG~ei~d~i------------------------------- 155 (318) ... ....+..| ...+..+ |||||.+++...+... ....+ T Consensus 83 ~~~~~~~~~p~L~~a~~~ia~~~IRn~aTiGGNl~~a~~~~d~-~~~L~al~a~v~~~~~~g~~~~~~~~~~~~~~~~~~ 161 (216) T 1rm6_B 83 EHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFY-NQSEWWRSGNGYCLKYKGDKCHVIVKSDRCYATYHG 161 (216) T ss_dssp HCHHHHHHSHHHHHHHHHSSCHHHHHHCBHHHHHTCCCBCTTT-SSCHHHHHHTTCBTTBBCSCCSSSTTCSSCCCBCCC T ss_pred HHHHCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCCCCCEEEECCCCCEEECCCC T ss_conf 3210002428899998741896462333245214467770454-200102578873014578730342367640212455 Q ss_pred ----------EEEEEECCCCCEEEECCCCCC--CCCCCCCCCCCCCEEEEECC Q ss_conf ----------643441123210000123344--31002322467620010023 Q gi|254781095|r 156 ----------VEVHGIDRKGNQHVIPREQLK--YQYRSSEITKDLIITHVVLR 196 (318) Q Consensus 156 ----------~~V~~~d~~g~~~~l~~~e~~--f~YR~S~~~~~~iIl~a~l~ 196 (318) .++.+...+| .+++.-+|+- -+||.+.++.+.+++++.+- T Consensus 162 ~~~~~l~a~~a~~~v~~~~g-~r~i~~~~f~~~~G~~~t~L~~~eil~~i~iP 213 (216) T 1rm6_B 162 DVAPALMVLDARAEIVGPAG-KRTVPVAQLFRESGAEHLTLEKGELLAAIEVP 213 (216) T ss_dssp SHHHHHHHTTCEEEEEETTE-EEEEEGGGGBCSCTTSCBCCCTTCEEEEEEEC T ss_pred CHHHHHHHHCCEEEEECCCC-EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 33689997188999852872-06822200035652233545651279999996 No 30 >>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:88-216) Probab=97.63 E-value=3.3e-05 Score=52.78 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=65.6 Q ss_pred EEEE-CCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHH----------HHHCCCCC-----CCCCEEEEEEEEE Q ss_conf 1330-266512331122156777788752012000387256632----------43115732-----1583134566643 Q gi|254781095|r 95 IEVR-NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIG----------GAAYMNAG-----ANNCETSQYVVEV 158 (318) Q Consensus 95 i~~~-~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVG----------GAi~mNAG-----ayG~ei~d~i~~V 158 (318) ++++ +...++|+||+.|.+|.+++.++||.=--.....+.|+| |.+.+|+. .||. ..|+|.++ T Consensus 6 i~id~~~~~v~v~aG~~~~~l~~~L~~~G~~~~~~~~~~~~t~gg~~~~~~~~~G~~~~~g~g~~~~~~G~-~~d~v~~~ 84 (129) T 3js8_A 6 IDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGS-ISNLVLSL 84 (129) T ss_dssp EECSSSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSC-GGGGEEEE T ss_pred ECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCCCCCCCCC-HHHCEEEE T ss_conf 71667917999899989999999999828835677767861356875787307774799987766456475-74717889 Q ss_pred EEECCCCCEEEECC---C----CCCCCCCCCCCCCCCCEEEEECCCCC Q ss_conf 44112321000012---3----34431002322467620010023545 Q gi|254781095|r 159 HGIDRKGNQHVIPR---E----QLKYQYRSSEITKDLIITHVVLRGFP 199 (318) Q Consensus 159 ~~~d~~g~~~~l~~---~----e~~f~YR~S~~~~~~iIl~a~l~l~~ 199 (318) ++++.+|++.++.. + |+.+.-+..- --||+++++++.| T Consensus 85 ~vv~~~G~~~~~~~~~~~~~~~dl~~~~g~~g---lGIit~~tl~l~P 129 (129) T 3js8_A 85 TAVVYDKASGAYALRKFARNDPQIAPLLAHVG---RSLIVEATLQAAP 129 (129) T ss_dssp EEEEEETTTTEEEEEEEETTSGGGHHHHTCTT---SSCEEEEEEEEEE T ss_pred EEEECCCCEEEEEECCCCCCCHHHHHHHCCCC---CEEEEEEEEEEEC T ss_conf 99964897126863777795688997514677---2357889999762 No 31 >>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103) Probab=97.18 E-value=0.00036 Score=46.24 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=55.9 Q ss_pred HHHHHHHHHHHC-CEEEECCC-CCCCC--CCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEE---EECC Q ss_conf 999999987506-62775488-00152--2576614889999689899999999856-299899984752036---6048 Q gi|254781095|r 7 SRLLRERGKQLR-GKFQENFP-LKQIT--WFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNIL---VRDA 78 (318) Q Consensus 7 ~~~l~~~~~~~~-g~i~~n~~-L~~~t--t~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil---~~D~ 78 (318) +..+.++...+. ..+..+.+ ++.|+ +....+.+..++.|+|.+|+.+++++|. +++|+.+.|+|+|+- ++++ T Consensus 10 ~~~~~~L~~~~~~~~v~~d~~~~~~~~~~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~ipv~~rggGts~~g~~~~~~ 89 (103) T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNG 89 (103) T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSSSCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCCB T ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC T ss_conf 99999999860976288388899887076544677876799509999999999999987982999789967777854688 Q ss_pred C---EECCHHHHC Q ss_conf 8---402202211 Q gi|254781095|r 79 G---IRGVVLRLS 88 (318) Q Consensus 79 ~---~~G~vI~l~ 88 (318) + .++++|.|+ T Consensus 90 gg~~~~~ividl~ 102 (103) T 1f0x_A 90 NDYDRDVVIISTL 102 (103) T ss_dssp SCCSSCEEEEECT T ss_pred CCCCCCEEEEECH T ss_conf 8887878999864 No 32 >>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:1-112) Probab=97.02 E-value=0.00069 Score=44.44 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=57.7 Q ss_pred HHHHHHHHHHHHHHCC-EEEECCC-CCCCC----C-CCCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEE Q ss_conf 7999999999875066-2775488-00152----2-57661488999968989999999985-62998999847520366 Q gi|254781095|r 4 GRISRLLRERGKQLRG-KFQENFP-LKQIT----W-FRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILV 75 (318) Q Consensus 4 ~~~~~~l~~~~~~~~g-~i~~n~~-L~~~t----t-~rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~ 75 (318) ...+..+.++...+.. .+..+.+ +..|+ | ....+....++.|.|.+|+.+++++| ++++|+.+.|+|+|+-- T Consensus 15 ~~~~~~~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~pv~~rggG~~~~g 94 (112) T 1wvf_A 15 GEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGY 94 (112) T ss_dssp HHHHHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTT T ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 99999999999863976487589999876255421246788887799569899999999999987980999899988778 Q ss_pred ---ECCCEECCHHHHCC Q ss_conf ---04884022022112 Q gi|254781095|r 76 ---RDAGIRGVVLRLSN 89 (318) Q Consensus 76 ---~D~~~~G~vI~l~~ 89 (318) +...-+|++|.+++ T Consensus 95 ~s~~~~~~~givIdl~~ 111 (112) T 1wvf_A 95 GSAAPVQRGQVILDLKK 111 (112) T ss_dssp TTTSCSSTTCEEEECTT T ss_pred CCCCCCCCCEEEEECHH T ss_conf 88757779989998244 No 33 >>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:77-193) Probab=97.02 E-value=0.0003 Score=46.73 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=48.7 Q ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHH-HCCCCEEEECCCCEEEEEC-CCEECCHHHHCCCC Q ss_conf 257661488999968989999999985-6299899984752036604-88402202211234 Q gi|254781095|r 32 WFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRD-AGIRGVVLRLSNAG 91 (318) Q Consensus 32 t~rvGG~A~~~~~p~s~~el~~~l~~~-~~~~p~~iiG~GSNil~~D-~~~~G~vI~l~~~~ 91 (318) +.+..+....+++|+|.+|+..++++| ++++|+.+.|+|+|+.-.- ...+|++|.+++++ T Consensus 55 ~~~~~~~P~~vv~P~s~~eV~~iv~~a~~~~ipv~~rggG~~~~g~~~~~~~gi~idl~~mn 116 (117) T 2uuu_A 55 IGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMR 116 (117) T ss_dssp TTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCSSCTTSCCCCSSCEEEEECT T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECC T ss_conf 79878998589954999999999999998799689848998888875116898459999867 No 34 >>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:1-126) Probab=96.69 E-value=0.0014 Score=42.55 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=44.8 Q ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEE---CCCEECCHHHHCC Q ss_conf 576614889999689899999999856-29989998475203660---4884022022112 Q gi|254781095|r 33 FRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVR---DAGIRGVVLRLSN 89 (318) Q Consensus 33 ~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~---D~~~~G~vI~l~~ 89 (318) .+.......++.|++.+|+++++++|. +++|+.+.|+|+++--. ..-.+|++|.+++ T Consensus 65 ~~~~~~P~aVv~P~~~~eV~~ivk~a~~~~i~v~~rggG~~~~g~~~~~~~~~giviDlsR 125 (126) T 1e8g_A 65 DQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGK 125 (126) T ss_dssp CTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTCCSSTTCEEEECTT T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCC T ss_conf 6656688789966999999999999998799389977998878888741579969998722 No 35 >>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:1-115) Probab=96.59 E-value=0.0026 Score=40.84 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=54.3 Q ss_pred HHHHHHHHHCC-EEEEC-CCCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHH-HC-CCCEEEECCCCEEEEECCCEE Q ss_conf 99999875066-27754-88001522---57661488999968989999999985-62-998999847520366048840 Q gi|254781095|r 9 LLRERGKQLRG-KFQEN-FPLKQITW---FRTGGNAEVMFQPQDIHDLKYFLTLL-PS-DIPITIVGLGSNILVRDAGIR 81 (318) Q Consensus 9 ~l~~~~~~~~g-~i~~n-~~L~~~tt---~rvGG~A~~~~~p~s~~el~~~l~~~-~~-~~p~~iiG~GSNil~~D~~~~ 81 (318) .+.++...+.. .+..+ ..+..+++ ....+....++.|++.+|+++++++| +. ++|+.+.|+|+++--.-...+ T Consensus 27 ~~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~~~~eV~~~v~~~~~~~~i~i~~rggGh~~~G~s~~~~ 106 (115) T 2exr_A 27 TDGVSESLNIQGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEG 106 (115) T ss_dssp -------CCCSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTTCCTT T ss_pred HHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC T ss_conf 23357653777616448878888654757865135257996199999999999999728904999879807888766898 Q ss_pred CCHHHHCCC Q ss_conf 220221123 Q gi|254781095|r 82 GVVLRLSNA 90 (318) Q Consensus 82 G~vI~l~~~ 90 (318) |++|.++++ T Consensus 107 gvvidl~rM 115 (115) T 2exr_A 107 GLVVDXSTT 115 (115) T ss_dssp SEEEEGGGG T ss_pred EEEEECHHH T ss_conf 799988122 No 36 >>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:1-95) Probab=96.55 E-value=0.0019 Score=41.62 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=43.1 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEE--CCCEECCHHHHC Q ss_conf 76614889999689899999999856-29989998475203660--488402202211 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVR--DAGIRGVVLRLS 88 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~--D~~~~G~vI~l~ 88 (318) ........++.|+|.+|+.+++++|. +++|+.+.|+|+++--. ....+|++|.|+ T Consensus 38 ~~~~~P~~Vv~P~s~~eV~~vv~~~~~~~i~v~~rggG~s~~g~~~~~~~~~vvidls 95 (95) T 1zr6_A 38 RVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELD 95 (95) T ss_dssp GGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTSSSSCEEEECT T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECC T ss_conf 5589950899649899999999999987975999869978888856688998999974 No 37 >>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87) Probab=95.69 E-value=0.013 Score=36.38 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=35.0 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEE Q ss_conf 76614889999689899999999856-29989998475203 Q gi|254781095|r 34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNI 73 (318) Q Consensus 34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNi 73 (318) ........++.|.|++|+++++++|. +++|+.+.|+|++. T Consensus 25 ~~~~~P~~vv~P~s~~eV~~iv~~a~~~~~~v~~rggGhs~ 65 (87) T 3js8_A 25 DIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNW 65 (87) T ss_dssp CCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCS T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 85568888994699999999999999879809998999677 No 38 >>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* (A:168-245,A:303-344) Probab=94.20 E-value=0.051 Score=32.61 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=69.6 Q ss_pred CCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE---CCCEECCHHHHCCC-CCCCEEEECCCCCCCCCEEE Q ss_conf 661488999968989999999985629989998475203660---48840220221123-44311330266512331122 Q gi|254781095|r 35 TGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR---DAGIRGVVLRLSNA-GFSNIEVRNHCEMIVGARCS 110 (318) Q Consensus 35 vGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~---D~~~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~ 110 (318) +.+....|+.|.|.+|+.+++...+ ...++++|+++++. ..-.+..+|.+++- .++.++..++ .++.||.. T Consensus 6 ~~~~~~~~~~P~sl~Eal~ll~~~~---~a~~iaGgTdl~~~~k~~~~~~~~lIdi~~I~eL~~I~~~~~-~l~IGAA~- 80 (120) T 2w3s_A 6 VRGQTAPAFLPETSDALADWYLAHP---EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPD-GYGIGAAS- 80 (120) T ss_dssp ------CCBCCSSHHHHHHHHHHCT---TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCEEEETT-EEEEETCE- T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEECCC-EEEECHCE- T ss_conf 4689866527889999999987589---857995471575422014467861587504341016998499-08973437- Q ss_pred HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCE Q ss_conf 15677778875201200038725663243115732158313456664344112321000012334431002322467620 Q gi|254781095|r 111 GKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLII 190 (318) Q Consensus 111 ~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~~f~YR~S~~~~~~iI 190 (318) |++-.++ ..+.++-+|+.-+||.+.++++.+| T Consensus 81 -----------------------------------------------~~l~~~~-g~R~vp~~dF~~g~~~t~l~~~E~i 112 (120) T 2w3s_A 81 -----------------------------------------------LTLRRGQ-ERRRMPLEDFFLEYRKQDRRPGEFV 112 (120) T ss_dssp -----------------------------------------------EEEEBTT-BCCCCBGGGGEEETTEESCCTTCEE T ss_pred -----------------------------------------------EEEEECC-CEEEEECCCCCCCCCCCCCCCCCEE T ss_conf -----------------------------------------------9998057-6089730112457411014777556 Q ss_pred EEEEC Q ss_conf 01002 Q gi|254781095|r 191 THVVL 195 (318) Q Consensus 191 l~a~l 195 (318) .++.+ T Consensus 113 ~~i~i 117 (120) T 2w3s_A 113 ESVTL 117 (120) T ss_dssp EEEEE T ss_pred EEEEC T ss_conf 77631 No 39 >>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:285-540,A:1311-1332) Probab=94.03 E-value=0.1 Score=30.77 Aligned_cols=107 Identities=17% Similarity=0.291 Sum_probs=65.0 Q ss_pred CCCEEEECCCCCCCCCEEEHHHHHHHHHHHH----------CCC----HHCCCCHH----HHHHHHHCCCCCCCCCEEEE Q ss_conf 4311330266512331122156777788752----------012----00038725----66324311573215831345 Q gi|254781095|r 92 FSNIEVRNHCEMIVGARCSGKSLANSALRHG----------IGG----FHFFYGIP----GSIGGAAYMNAGANNCETSQ 153 (318) Q Consensus 92 ~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~g----------l~G----lE~l~gIP----GTVGGAi~mNAGayG~ei~d 153 (318) ++.|+..++ .++.||++.+.++........ +.. +...++-+ |||||.++....+...-..- T Consensus 3 L~~I~~~~~-~l~IGA~vT~~~l~~~~~~~~~~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~a~p~~D~~~~L 81 (278) T 1v97_A 3 LNAVEHGPE-GISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVF 81 (278) T ss_dssp GTCEEECSS-EEEEETTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHTTCBHHHHHHHCCTTCSSHHHH T ss_pred HHCEEECCC-EEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCEECCCCCCCCCHHH T ss_conf 725896699-7999356939999999999876445033456799999999855576514302101011068764203667 Q ss_pred EE--EEEEEECCCCCEEEEC-CCCCCCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 66--6434411232100001-23344310023224676200100235456 Q gi|254781095|r 154 YV--VEVHGIDRKGNQHVIP-REQLKYQYRSSEITKDLIITHVVLRGFPE 200 (318) Q Consensus 154 ~i--~~V~~~d~~g~~~~l~-~~e~~f~YR~S~~~~~~iIl~a~l~l~~~ 200 (318) .. -.|++...+| .++++ .+++.-+|+.+.++.+.+|+++.+...+. T Consensus 82 lAl~A~v~i~~~~G-~R~i~~~e~f~~g~~~t~L~~~EiI~~I~iP~~~~ 130 (278) T 1v97_A 82 MASGTKLTIVSRGT-RRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSRE 130 (278) T ss_dssp HHTTCEEEEEETTE-EEEEECCGGGCCSTTCCSCCTTCEEEEEEEECCCT T ss_pred HHCCCEEEEEECCC-EEEEECHHHHHCCCCCCCCCCCCEEEEEECCCCCC T ss_conf 53487899970797-49986346442144333578885599998568987 No 40 >>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276) Probab=92.67 E-value=0.027 Score=34.34 Aligned_cols=12 Identities=50% Similarity=0.681 Sum_probs=9.9 Q ss_pred EEEEEEECCCCC Q ss_conf 465889727898 Q gi|254781095|r 226 TGGSTFKNPTGH 237 (318) Q Consensus 226 s~GSvFkNP~~~ 237 (318) |||||||||.-. T Consensus 1 NaGSFFKNPiV~ 12 (38) T 3i99_A 1 NAGSFFKNPVIS 12 (38) T ss_dssp EEEESBCCCEEC T ss_pred CCCEEECCCCCH T ss_conf 766031255423 No 41 >>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} (A:) Probab=75.65 E-value=3.1 Score=21.39 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=43.3 Q ss_pred CCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH Q ss_conf 522576614889999689899999999856-29989998--------475203660488402202 Q gi|254781095|r 30 ITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL 85 (318) Q Consensus 30 ~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI 85 (318) +.+|.-.|.++......|+++|.++.+.++ .++|..++ -.||++.+.-++++--.| T Consensus 43 ~~~W~~~g~~Kvvlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~gs~TvlaigP~p~~~i 107 (117) T 1rlk_A 43 FNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKL 107 (117) T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCSSSSSCCCEEEEEEEEEEHHHH T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH T ss_conf 99998589916899519989999999999987998899987997606999879999787888888 No 42 >>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Pyrococcus horikoshii OT3} PDB: 2d3k_A (A:) Probab=73.36 E-value=5.9 Score=19.57 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=42.7 Q ss_pred CCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEEC--------CCCEEEEECCCEECCHH Q ss_conf 1522576614889999689899999999856-299899984--------75203660488402202 Q gi|254781095|r 29 QITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVG--------LGSNILVRDAGIRGVVL 85 (318) Q Consensus 29 ~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG--------~GSNil~~D~~~~G~vI 85 (318) -+-+|...|.++......|+++|.++.+.++ .++|+.++= .||.+++.-++.+--.| T Consensus 46 ~~~~W~~~g~~Kvvlkv~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~TvlaigP~p~~~i 111 (121) T 1wn2_A 46 WFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIV 111 (121) T ss_dssp HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCTTCEEEEEEEEEEHHHH T ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCEEEEEECCCCHHHH T ss_conf 999999789917999739989999999999987997899986898671999868999787888888 No 43 >>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} (A:) Probab=72.90 E-value=5.2 Score=19.94 Aligned_cols=57 Identities=7% Similarity=0.157 Sum_probs=43.7 Q ss_pred CCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEEC--------CCCEEEEECCCEECCHHH Q ss_conf 522576614889999689899999999856-299899984--------752036604884022022 Q gi|254781095|r 30 ITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVG--------LGSNILVRDAGIRGVVLR 86 (318) Q Consensus 30 ~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG--------~GSNil~~D~~~~G~vI~ 86 (318) +.+|.-.|.++......|+++|.++.+.++ .++|..++= .||.+++.-++.+--.|. T Consensus 46 ~~~W~~~g~~Kivlk~~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tev~~gs~TviaigP~p~~~i~ 111 (120) T 1xty_A 46 LNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVD 111 (120) T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHH T ss_pred HHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHH T ss_conf 999986797589998399999999999999879988999849976439998689997878888988 No 44 >>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} (A:) Probab=64.12 E-value=8 Score=18.74 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=42.5 Q ss_pred CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH Q ss_conf 01522576614889999689899999999856-29989998--------475203660488402202 Q gi|254781095|r 28 KQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL 85 (318) Q Consensus 28 ~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI 85 (318) .-+.+|...|.++......|+++|.++.+.++ .++|..++ -.||.+++.-++++--.| T Consensus 39 ~~~~~W~~~g~~Kivl~~~~e~~l~~l~~~a~~~gl~~~~i~DAG~TEi~~gt~TvlaigP~p~~~i 105 (115) T 2zv3_A 39 RAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKI 105 (115) T ss_dssp HHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC-------EEEEEEEEEECHHHH T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH T ss_conf 9999998689917999639999999999999887995899981997513999878999898887898 No 45 >>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} (A:) Probab=63.51 E-value=10 Score=18.12 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=41.8 Q ss_pred CCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHH Q ss_conf 1522576614889999689899999999856-29989998--------475203660488402202 Q gi|254781095|r 29 QITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVL 85 (318) Q Consensus 29 ~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI 85 (318) -+-.|.-.|.++......|+++|.++.+.++ .++|..++ -.||++++.-++++--.| T Consensus 42 ~~~~W~~~g~~KvvLkv~~e~~l~~l~~~a~~~~l~~~~v~DAG~Tei~~gt~TvlaigP~p~~~i 107 (117) T 1q7s_A 42 MLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLI 107 (117) T ss_dssp HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHH T ss_conf 999998689917999509999999999999987997899986997403999858999787887898 No 46 >>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} (A:1-10,A:249-352) Probab=59.87 E-value=12 Score=17.62 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=56.4 Q ss_pred CCEEE-EEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 67046-588972789851000263186882066778715677089968-9979999999999999999998475 Q gi|254781095|r 223 KEKTG-GSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINA-DNATGYDLEYLGEQVRKKVFNQSGI 294 (318) Q Consensus 223 ~~~s~-GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~-g~ata~di~~Li~~v~~~V~~~~gi 294 (318) ..+|. =..|+.|.+..+..+.+.+-=+|..+.+-+.+-++.-|=|+. |.-+.+|+..+++.+++. .++.|+ T Consensus 40 ~~~s~~vt~v~~p~gi~~~~~~~~L~~~gi~I~~g~g~~~~~~fRIg~mG~~~~edi~~~l~al~~~-L~~lg~ 112 (114) T 1iug_A 40 KRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREV-LEEILP 112 (114) T ss_dssp SSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHH-HHHHC- T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-HHHHHC T ss_conf 3469946999799999999999999977929976773137968988689999999999999999999-999727 No 47 >>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* (A:1-17,A:252-353) Probab=53.62 E-value=15 Score=16.97 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=53.0 Q ss_pred EEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEC-C-CCCHHHHHHHHHHHHHHHH Q ss_conf 046588972789851000263186882066778715677089968-9-9799999999999999999 Q gi|254781095|r 225 KTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINA-D-NATGYDLEYLGEQVRKKVF 289 (318) Q Consensus 225 ~s~GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~-g-~ata~di~~Li~~v~~~V~ 289 (318) .+.=..|..|.+..+..+.+.+-=+|+.+.+-+-+-++.-|=|.. | +++..|+..+++-+.+... T Consensus 51 S~~VTav~~P~gid~~~l~~~L~e~gi~I~~G~g~l~~~~fRIghMG~~i~~~di~~~l~aL~~aL~ 117 (119) T 2yrr_A 51 LPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 117 (119) T ss_dssp CTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9869999799998999999999978919990664325999998288588989999999999999983 No 48 >>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:223-284) Probab=53.25 E-value=4.4 Score=20.39 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=28.8 Q ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE Q ss_conf 25766148899996898999999998562998999847520366 Q gi|254781095|r 32 WFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV 75 (318) Q Consensus 32 t~rvGG~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~ 75 (318) ++.+++.-.-|+.|.|.+|+.+++..... -.++.||+.+.+ T Consensus 4 ~~~~~~~~~~~~~P~tl~el~~ll~~~P~---A~iiaGgTdl~~ 44 (62) T 1v97_A 4 QLRFEGERVTWIQASTLKELLDLKAQHPE---AKLVVGNTEIGI 44 (62) T ss_dssp CEEEECSSCEEEECCSHHHHHHHHHHCTT---CEECSSCTTHHH T ss_pred CEEECCCCEEEECCCCHHHHHHHHHHCCC---CEEEEECCHHHH T ss_conf 14753886057578979999999987899---879997464775 No 49 >>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} (A:) Probab=47.00 E-value=19 Score=16.32 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=43.7 Q ss_pred CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEE--------CCCCEEEEECCCEECCHHH Q ss_conf 01522576614889999689899999999856-29989998--------4752036604884022022 Q gi|254781095|r 28 KQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIV--------GLGSNILVRDAGIRGVVLR 86 (318) Q Consensus 28 ~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~ii--------G~GSNil~~D~~~~G~vI~ 86 (318) ..+.+|+-.|.++......|+++|.++.+.++ .++|+.++ -.||.+++.-++.+.-.|. T Consensus 38 ~~~~~W~~~g~~KVvLk~~~e~~L~~l~~~a~~~~l~~~~i~DAG~Tei~~gt~TvlaigP~p~~~i~ 105 (123) T 1rzw_A 38 SLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKID 105 (123) T ss_dssp THHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTCCSCSTTSCEEEEEEEECHHHHH T ss_pred HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHH T ss_conf 87899986897289999299999999999999879988999858975049998689998778888998 No 50 >>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:400-407,A:533-582) Probab=40.49 E-value=24 Score=15.69 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=36.1 Q ss_pred CCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC--CEEEEC Q ss_conf 066778715677089968997999999999999999999847--540042 Q gi|254781095|r 252 EFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSG--ILLEWE 299 (318) Q Consensus 252 ~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~g--i~Le~E 299 (318) |-|.--|+-----.+|+.++.+.++..++.+.+.+.|.+++. ++||.| T Consensus 7 ~~G~~VIYGDTDSvfV~~~~~~~eea~~~g~e~a~~In~~~~~pi~LEfE 56 (58) T 1qht_A 7 RSGFKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYE 56 (58) T ss_dssp SSCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHC------CCCEEE T ss_pred CCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 66970453033248997388747888889999999877763330000301 No 51 >>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} (A:258-504) Probab=40.39 E-value=24 Score=15.68 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=27.7 Q ss_pred CCHHHHHHCCCCCCCCCCEEECCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCE Q ss_conf 510002631868820667787156770--8996899799999999999999999984754004228 Q gi|254781095|r 238 SAWQLIEKSGCRGLEFGGAKISELHCN--FMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIK 301 (318) Q Consensus 238 ~A~~LIe~~GlKG~~iG~a~vS~kHan--fivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~ 301 (318) .|-+|++++|++...-++......-.. +++.. .....+-...++.++ .-.++.||+++.+.. T Consensus 83 ~A~~ll~~ag~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~i~-~~l~~~Gi~v~~~~~ 146 (247) T 1vr5_A 83 XAKKILDELGFKDVNKDGFREDPNGKPFKLTIEC-PYGWTDWXVSIQSIA-EDLVKVGINVEPKYP 146 (247) T ss_dssp HHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEEC-CTTCHHHHHHHHHHH-HHHHTTTCCEEEECC T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCHHHHHHHHHHH-HHHHHHHHCCCCCCC T ss_conf 9999899739864587764014776664213236-888626789999999-997640200332222 No 52 >>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (C:1-57) Probab=39.29 E-value=19 Score=16.35 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=23.8 Q ss_pred EEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE Q ss_conf 9996898999999998562998999847520366 Q gi|254781095|r 42 MFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV 75 (318) Q Consensus 42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~ 75 (318) |..|+|.+|-.+++.... +-.-.+|.+|++++. T Consensus 6 y~~p~sv~eA~~ll~~~~-~~~a~~lAGGtdLl~ 38 (57) T 3hrd_C 6 FFAPKTLEEAKGLLHQYK-DVPPAIIAGGTDLVI 38 (57) T ss_dssp EECCSSHHHHHHHHHHTT-TSCCEEESSCTTHHH T ss_pred EECCCCHHHHHHHHHHCC-CCCCEEEECCCHHHH T ss_conf 668999999999998589-989769988765999 No 53 >>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} (D:) Probab=38.06 E-value=6.7 Score=19.24 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.3 Q ss_pred CCHHCCCCHHHHHHHHHC Q ss_conf 120003872566324311 Q gi|254781095|r 124 GGFHFFYGIPGSIGGAAY 141 (318) Q Consensus 124 ~GlE~l~gIPGTVGGAi~ 141 (318) +||.+.+.|||-||+|.. T Consensus 13 s~L~~AS~vPGPvG~aAt 30 (44) T 1nov_D 13 SGLNFASTIPGPVGVAAT 30 (44) T ss_pred HHHHHHHCCCCCHHHHHH T ss_conf 888888339974147887 No 54 >>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* (A:1-27,A:280-393) Probab=36.12 E-value=29 Score=15.26 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=54.7 Q ss_pred EEEECCCCCCCHHHHHHCCCC-CCCCCCEEECCCCCEEEEEC-C-CCCHHHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 889727898510002631868-82066778715677089968-9-9799999999999999999984754004 Q gi|254781095|r 229 STFKNPTGHSAWQLIEKSGCR-GLEFGGAKISELHCNFMINA-D-NATGYDLEYLGEQVRKKVFNQSGILLEW 298 (318) Q Consensus 229 SvFkNP~~~~A~~LIe~~GlK-G~~iG~a~vS~kHanfivN~-g-~ata~di~~Li~~v~~~V~~~~gi~Le~ 298 (318) ..|+.|.+..++++.+.+--+ |..+++-.=.-++--|=|+. | +++..||..+++.+++ +.++.|+...+ T Consensus 66 tav~~Pegid~~~l~~~L~~~~gi~I~~G~g~~~~~~fRIghMG~~~~~edI~~~l~aL~~-~L~~~g~~~~~ 137 (141) T 2huf_A 66 TTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE-AVAAVKPDVQV 137 (141) T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH-HHHHHCC---- T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCC T ss_conf 9998899989999999986339989966660211998998477764999999999999999-99984888888 No 55 >>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235) Probab=36.02 E-value=18 Score=16.49 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.6 Q ss_pred CEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 14889999689899999999856299899984752 Q gi|254781095|r 37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGS 71 (318) Q Consensus 37 G~A~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GS 71 (318) |-.+..+..++.+|..++.+..+....+.|+|+|- T Consensus 2 G~~~~v~~~~~~~~~~~~~~~~~~~~~v~IiGgG~ 36 (116) T 2gqw_A 2 GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGV 36 (116) T ss_dssp TCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSH T ss_pred CCCCCCCCCEEEHHCCCHHHHCCCCCCEEEECCCC T ss_conf 65455321000010000011125676308972411 No 56 >>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 2bbv_D (B:) Probab=35.71 E-value=7.8 Score=18.83 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.2 Q ss_pred CCHHCCCCHHHHHHHHHC Q ss_conf 120003872566324311 Q gi|254781095|r 124 GGFHFFYGIPGSIGGAAY 141 (318) Q Consensus 124 ~GlE~l~gIPGTVGGAi~ 141 (318) +||.+.+.|||-||+|.. T Consensus 13 s~L~~AS~vPGPvG~aAt 30 (44) T 2z2q_B 13 SSLAAASNIPGPIGVAAS 30 (44) T ss_pred HHHHHHCCCCCCHHHHHH T ss_conf 888886059985002430 No 57 >>1fjm_A Protein serine/threonine phosphatase-1 (alpha isoform, type 1); hydrolase, complex (hydrolase/toxin) complex; HET: ADD; 2.10A {Oryctolagus cuniculus} (A:) Probab=33.48 E-value=31 Score=14.99 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=31.3 Q ss_pred CCCCCCEEEEEEEEC-CHHHHHHHHHHH--HCCCCEEEECCCCEEEEECCCEECC Q ss_conf 257661488999968-989999999985--6299899984752036604884022 Q gi|254781095|r 32 WFRTGGNAEVMFQPQ-DIHDLKYFLTLL--PSDIPITIVGLGSNILVRDAGIRGV 83 (318) Q Consensus 32 t~rvGG~A~~~~~p~-s~~el~~~l~~~--~~~~p~~iiG~GSNil~~D~~~~G~ 83 (318) -.++-++...+-..+ +..||..++... +....+..+|. +-|.|..++ T Consensus 52 l~~i~~~i~vvGDlHG~~~dL~~i~~~~g~p~~~~yvFLGD-----yVDRG~~sl 101 (330) T 1fjm_A 52 LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGD-----YVDRGKQSL 101 (330) T ss_dssp EEEECSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSC-----CSSSSSCHH T ss_pred EEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCC-----CCCCCCCHH T ss_conf 79955996999878778087999999669986432885376-----565686406 No 58 >>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} (A:124-243) Probab=31.53 E-value=34 Score=14.79 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.5 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 89999689899999999856299899984752 Q gi|254781095|r 40 EVMFQPQDIHDLKYFLTLLPSDIPITIVGLGS 71 (318) Q Consensus 40 ~~~~~p~s~~el~~~l~~~~~~~p~~iiG~GS 71 (318) +-++..++.++..++..+.+....+.|+|+|- T Consensus 5 ~~v~~~~~~~d~~~~~~~~~~~k~v~ViGgG~ 36 (120) T 2cdu_A 5 SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGY 36 (120) T ss_dssp TTEEECSSHHHHHHHHHHGGGCSEEEEECCSH T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEE T ss_conf 12222221111111000110113232322100 No 59 >>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} (A:137-284,A:358-441) Probab=28.87 E-value=26 Score=15.49 Aligned_cols=133 Identities=10% Similarity=-0.019 Sum_probs=70.2 Q ss_pred CCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCC-----CCE---EEEEEEEEEEECCCCCEEEEC Q ss_conf 665123311221567777887520120003872566324311573215-----831---345666434411232100001 Q gi|254781095|r 100 HCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGAN-----NCE---TSQYVVEVHGIDRKGNQHVIP 171 (318) Q Consensus 100 ~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGay-----G~e---i~d~i~~V~~~d~~g~~~~l~ 171 (318) +..+.+.......++...|.+.|+.+-++..-.+........+.-..+ ..+ ....+..|....+.|.+..=. T Consensus 77 RIiIl~~~~~~~~~il~~A~~~gl~~~~Yv~I~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~i~~~~PtG~v~id~ 156 (232) T 1jdp_A 77 RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTAGQVSIDA 156 (232) T ss_dssp SEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCTEEEEECT T ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCEEEEECC T ss_conf 54999935899999999999828988876999955334554346631235531167899987624213468863699899 Q ss_pred CCCCCCCCCCCCCCC--CC-CEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCC Q ss_conf 233443100232246--76-20010023545654310012221001100015566704658897278 Q gi|254781095|r 172 REQLKYQYRSSEITK--DL-IITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPT 235 (318) Q Consensus 172 ~~e~~f~YR~S~~~~--~~-iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP~~~~s~GSvFkNP~ 235 (318) +-|-.-.|-=-.+++ +. ...-+.+.... + .....-.....+-..+.|.+.|-||=--.+++ T Consensus 157 ~gdr~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~~~i~w~~~~~p~d~p~cgf~~e~c~ 220 (232) T 1jdp_A 157 NGDRYGDFSVIAMTDVEAGTQEVIGDYFGKE--G-RFEMRPNVKYPWGPLKLRIDENRIVEHTNSSP 220 (232) T ss_dssp TSBBCCEEEEEEEEETTTTEEEEEEEEETTT--T-EEEECC-------------------------- T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEEECCC--C-EEEECCCCEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 9983575799999988999189999998998--8-39951896447899896799885667799998 No 60 >>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:126-227) Probab=27.02 E-value=40 Score=14.30 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=22.5 Q ss_pred EEECCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 9968989999999985629989998475 Q gi|254781095|r 43 FQPQDIHDLKYFLTLLPSDIPITIVGLG 70 (318) Q Consensus 43 ~~p~s~~el~~~l~~~~~~~p~~iiG~G 70 (318) +..++.+|..++.+..+....+.|+|+| T Consensus 3 ~~~r~~~d~~~i~~~~~~~k~i~IvGgG 30 (102) T 3klj_A 3 FSLYSYDDALKIKDECKNKGKAFIIGGG 30 (102) T ss_dssp ECCSSHHHHHHHHHHHHHHSCEEEECCS T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 1337799998765544049769999786 No 61 >>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A (A:) Probab=25.43 E-value=43 Score=14.12 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=29.2 Q ss_pred CCCCCCEEEEEEEEC-CHHHHHHHHHHHH---CCCCEEEECCCCEEEEECCCEEC Q ss_conf 257661488999968-9899999999856---29989998475203660488402 Q gi|254781095|r 32 WFRTGGNAEVMFQPQ-DIHDLKYFLTLLP---SDIPITIVGLGSNILVRDAGIRG 82 (318) Q Consensus 32 t~rvGG~A~~~~~p~-s~~el~~~l~~~~---~~~p~~iiG~GSNil~~D~~~~G 82 (318) +.++.++.-.+-..+ +..||.++++... ...++.++|. .-|.|..+ T Consensus 55 ~~~~~~~v~VvGDiHG~~~dl~~if~~~g~~~~~~~yvFLGD-----YVDRG~~s 104 (315) T 3h63_A 55 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGD-----FVDRGSFS 104 (315) T ss_dssp CCCTTCEEEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESC-----CSSSSTTH T ss_pred ECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECC-----CCCCCCCC T ss_conf 147899769996577898999999997699998762899556-----46654441 No 62 >>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:117-237) Probab=24.55 E-value=42 Score=14.21 Aligned_cols=29 Identities=10% Similarity=0.370 Sum_probs=22.1 Q ss_pred EEEECCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 99968989999999985629989998475 Q gi|254781095|r 42 MFQPQDIHDLKYFLTLLPSDIPITIVGLG 70 (318) Q Consensus 42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~G 70 (318) .+..++..+..++..+.+....+.|+|+| T Consensus 7 v~~~~~~~~~~~~~~~~~~~~~v~ViGgG 35 (121) T 3fg2_P 7 VLYLRTLDESEVLRQRMPDKKHVVVIGAG 35 (121) T ss_dssp EECCSSHHHHHHHHHHGGGCSEEEEECCS T ss_pred CCEEEEHHHHHHHHHHHHCCCCCEEECCC T ss_conf 10000010111010011025631898032 No 63 >>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} (A:95-138,A:230-291) Probab=24.09 E-value=46 Score=13.96 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=32.0 Q ss_pred HHHHHH-HHHCC-CCEEEECCCCEEEEECCCEECCHHHHCCCCCCCEEEECCCCC-CCCCEE-EHHH-HHHHHHHHHCC Q ss_conf 999999-85629-989998475203660488402202211234431133026651-233112-2156-77778875201 Q gi|254781095|r 51 LKYFLT-LLPSD-IPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEM-IVGARC-SGKS-LANSALRHGIG 124 (318) Q Consensus 51 l~~~l~-~~~~~-~p~~iiG~GSNil~~D~~~~G~vI~l~~~~~~~i~~~~~~~i-~v~AG~-~~~~-l~~~~~~~gl~ 124 (318) +..+.+ .+..+ -=.-|||.|||.-+-|+ --|......+-.|...+- .+ .+|+=+ ...+ |...+.+.|+. T Consensus 2 llaAarA~cg~e~GIaCILGTGSNsc~yDG----k~I~~nv~~LGYI~~~~~-pvhFVGSIA~~~q~~L~eva~~~gl~ 75 (106) T 1zxo_A 2 XLAAAHGLCGQKAGIACILGTGSNSCFYNG----KEIVSNISPLGFIDYKQY-PVHFIGSIAYCYKEILQDAARQTGIQ 75 (106) T ss_dssp HHHHHHHTTTTSCBEEEEESSSEEEEEECS----SSEEEECCCCCTTCTTTS-CEEECSHHHHHTHHHHHHHTTTTTCC T ss_pred CHHHHHHHCCCCCEEEEEECCCEEEEEEEC----CCCEEECCCCCCCCCCCC-CEEEECCHHHHHHHHHHHHHHHCCCE T ss_conf 378999743899849999268800699958----998797177464757997-68998667999999999999986987 No 64 >>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae R6} (X:80-165) Probab=22.41 E-value=42 Score=14.20 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=28.1 Q ss_pred CCHHHHHHCCCCCCCCCCEEECCCCCEEEEECC Q ss_conf 510002631868820667787156770899689 Q gi|254781095|r 238 SAWQLIEKSGCRGLEFGGAKISELHCNFMINAD 270 (318) Q Consensus 238 ~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g 270 (318) -.|.|..++|++.-.+|+..|.+.++-+++... T Consensus 25 ilGal~~~~Gi~r~~iGdI~i~~~~~~v~v~~~ 57 (86) T 2fph_X 25 ILGTVINQLGIERKLFGDILVDEERAQIMINQQ 57 (86) T ss_dssp HHSCSSSCCCCCGGGEEEEECSSSCCEEEEEGG T ss_pred HHHHHHHCCCCCHHHCCCEEEECCEEEEEECHH T ss_conf 999987204998877267898499899998399 No 65 >>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} (D:57-140) Probab=21.25 E-value=45 Score=13.99 Aligned_cols=38 Identities=18% Similarity=0.033 Sum_probs=27.8 Q ss_pred HHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCC Q ss_conf 24311573215831345666434411232100001233 Q gi|254781095|r 137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQ 174 (318) Q Consensus 137 GGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e 174 (318) ||-++.-||+|..-++..=..+.+-.+.|++++++.+- T Consensus 35 ggk~~RsAGt~a~ii~k~~~~~~ikLpSge~r~i~~~c 72 (84) T 1giy_D 35 GGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKC 72 (84) T ss_pred CEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCC T ss_conf 52799858986999993499999986898879877778 No 66 >>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} (A:) Probab=21.18 E-value=51 Score=13.68 Aligned_cols=40 Identities=18% Similarity=-0.020 Sum_probs=32.5 Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCC Q ss_conf 3243115732158313456664344112321000012334 Q gi|254781095|r 136 IGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQL 175 (318) Q Consensus 136 VGGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~ 175 (318) =||-.+..||+|..=+...-..+.+-.+.|++++++.+-+ T Consensus 90 ~ggk~~RsAGt~a~ii~k~~~~~~ikLPSg~~k~i~~~c~ 129 (137) T 1rl2_A 90 RGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRXILGKCR 129 (137) T ss_dssp SCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSE T ss_pred CCCEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCC T ss_conf 8758998046527999973999999938989789998595 No 67 >>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (A:1-168) Probab=21.16 E-value=44 Score=14.06 Aligned_cols=39 Identities=13% Similarity=-0.030 Sum_probs=31.3 Q ss_pred HHHHCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCC Q ss_conf 243115732158313456664344112321000012334 Q gi|254781095|r 137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQL 175 (318) Q Consensus 137 GGAi~mNAGayG~ei~d~i~~V~~~d~~g~~~~l~~~e~ 175 (318) ||.++..||+|..=++..-..|.+-.+.|+++.++.+-+ T Consensus 116 ggk~~RsAGt~a~ii~k~~~~v~ikLPSG~~k~i~~~c~ 154 (168) T 1vq8_A 116 GGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCR 154 (168) T ss_dssp CCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCE T ss_pred CCCEEECCCCCEEEECCCCCEEEEECCCCCEEEECHHHC T ss_conf 741540233100340102656999868988688331313 No 68 >>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha catalytic subunit; PP1:nodularin CO-carbohydrate metabolism, cell cycle, cell division; HET: X9A; 1.63A {Homo sapiens} PDB: 3e7b_A* 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* (A:) Probab=20.44 E-value=54 Score=13.50 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=30.3 Q ss_pred CCCCCCCEEEEEEEEC-CHHHHHHHHHHH--HCCCCEEEECCCCEEEEECCCEEC Q ss_conf 2257661488999968-989999999985--629989998475203660488402 Q gi|254781095|r 31 TWFRTGGNAEVMFQPQ-DIHDLKYFLTLL--PSDIPITIVGLGSNILVRDAGIRG 82 (318) Q Consensus 31 tt~rvGG~A~~~~~p~-s~~el~~~l~~~--~~~~p~~iiG~GSNil~~D~~~~G 82 (318) +-.+|-+|+-.+-..+ +.+||..++... +....+..+|. +-|.|..+ T Consensus 50 ~l~~i~~pv~VvGDlHG~~~dL~~if~~~g~~~~~~yvFLGD-----yVDRG~~s 99 (299) T 3e7a_A 50 ILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGD-----YVDRGKQS 99 (299) T ss_dssp SEEEECSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSC-----CSSSSSCH T ss_pred CEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCC-----CCCCCCCH T ss_conf 879955996999878778588999998467875324886365-----46778641 No 69 >>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} (A:89-216) Probab=20.31 E-value=35 Score=14.73 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=19.4 Q ss_pred CHHHHHHHHHH-HHCCCCEEEECCCCEEEEECCCE Q ss_conf 98999999998-56299899984752036604884 Q gi|254781095|r 47 DIHDLKYFLTL-LPSDIPITIVGLGSNILVRDAGI 80 (318) Q Consensus 47 s~~el~~~l~~-~~~~~p~~iiG~GSNil~~D~~~ 80 (318) ...++.+.++. .+.+.|+...-.+..-.+.-+|+ T Consensus 55 ~l~~iE~~~n~~I~~~~pv~~~~~~~~r~v~i~g~ 89 (128) T 2e1b_A 55 YKEQIISLFNKYVDEGGEVKIWWEGDRRYTQIRDF 89 (128) T ss_dssp GHHHHHHHHHHHHHHCCBEEEEESSSCEEEEETTS T ss_pred HHHHHHHHHHEEECCCCEEEEEEECCEEEEEECCE T ss_conf 88876543214641373688886233477789977 Done!