HHSEARCH alignment of GI: 254781095 and SCOP domain: d1ffvc2

Alignment
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=97.98  E-value=7.1e-06  Score=54.54  Aligned_cols=150  Identities=12%  Similarity=0.214  Sum_probs=97.4

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECC-CEECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHHH
Q ss_conf             99996898999999998562998999847520366--048-84022022112-344311330266512331122156777
Q gi|254781095|r   41 VMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDA-GIRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLAN  116 (318)
Q Consensus        41 ~~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~-~~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~~  116 (318)
                      -|+.|+|.+|+.+++...+  -...++++|+.++.  ..+ .-+..+|.+.+ ..++.++..++ .+++||++.+.++..
T Consensus         7 ~~~~P~sl~Ea~~ll~~~~--~~a~~laGGTdl~~~~~~~~~~~~~lidl~~i~eL~~I~~~~~-~l~IGA~~t~~~l~~   83 (177)
T d1ffvc2           7 EYHAPKSVGEAVALLGQLG--SDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS-TVVIGAMTVENDLIS   83 (177)
T ss_dssp             EEECCSSHHHHHHHHHHHG--GGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETT-EEEEETTCBHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC-EEEEECCEEHHHHHH
T ss_conf             0789899999999997449--9988997076057656425368301007665220356850596-699753678999973


Q ss_pred             HHH-HHHCCCH----HCCCCHH-----HHHHHHHCCCCCCCCCEEEEEE----EEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             788-7520120----0038725-----6632431157321583134566----643441123210000123344310023
Q gi|254781095|r  117 SAL-RHGIGGF----HFFYGIP-----GSIGGAAYMNAGANNCETSQYV----VEVHGIDRKGNQHVIPREQLKYQYRSS  182 (318)
Q Consensus       117 ~~~-~~gl~Gl----E~l~gIP-----GTVGGAi~mNAGayG~ei~d~i----~~V~~~d~~g~~~~l~~~e~~f~YR~S  182 (318)
                      ... ..-+..+    ..++. |     |||||.++. +-..+. +.-.+    -.|++...+| .++++-+|+--+|+..
T Consensus        84 ~~~~~~~~~~l~~a~~~~as-~qIRn~aTiGGni~~-~~p~~D-~~~~LlAl~A~v~l~~~~g-~r~vpl~df~~g~~~t  159 (177)
T d1ffvc2          84 SPIVQARLPLLAEAAKLIAD-PQVRNRGTIGGDIAH-GDPGND-HPALSIAVEAHFVLEGPNG-RRTVPADGFFLGTYMT  159 (177)
T ss_dssp             CHHHHHHCHHHHHHGGGSSC-TTGGGTCBHHHHHHT-CCTTCS-HHHHHHHTTCEEEEEETTE-EEEEESTTTEEETTEE
T ss_pred             CCCCCHHHHHHHHHHHCCCC-HHHEEEEEECCCEEE-CCCCCC-HHHHHHHHCCEEEEECCCC-EEEEEHHHHCCCCCCC
T ss_conf             92101578999999853589-215689985363665-134441-3679986234389976995-6998999942574525


Q ss_pred             CCCCCCCEEEEECCC
Q ss_conf             224676200100235
Q gi|254781095|r  183 EITKDLIITHVVLRG  197 (318)
Q Consensus       183 ~~~~~~iIl~a~l~l  197 (318)
                      .++.+.+|+++.+-.
T Consensus       160 ~l~~~Eii~~I~iP~  174 (177)
T d1ffvc2         160 LLEENEVMVEIRVPA  174 (177)
T ss_dssp             SCCTTCEEEEEEEEC
T ss_pred             CCCCCCEEEEEEECC
T ss_conf             469986699998027


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]