HHSEARCH alignment of GI: 254781095 and SCOP domain: d1jroa4

Alignment
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=97.49  E-value=1.9e-05  Score=51.79  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             EEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--ECCC-EECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHHHHH
Q ss_conf             996898999999998562998999847520366--0488-4022022112-34431133026651233112215677778
Q gi|254781095|r   43 FQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RDAG-IRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLANSA  118 (318)
Q Consensus        43 ~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D~~-~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~~~~  118 (318)
                      +.|+|.+|+.+++...+   ...++++|+.++.  .++. ....+|.+.+ ..++.++..++ .+++||++.+.++...+
T Consensus         3 y~P~tl~e~~~l~~~~p---~a~~vaGGTdl~~~~~~~~~~~~~~idl~~i~eL~~i~~~~~-~l~IGA~vt~~~l~~~~   78 (167)
T d1jroa4           3 FLPETSDALADWYLAHP---EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPD-GYGIGAGVTIAALRAFA   78 (167)
T ss_dssp             BCCSSHHHHHHHHHHCT---TCEEESSCTTTHHHHHTSCCCCCSEEEGGGCGGGSCEEEETT-EEEEETTCBHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCC---CCEEEECCCHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECC-CCCCCCCHHHHHHHHHH
T ss_conf             88655999999997789---987997577589886402247874670100144005775034-21246400289998766


Q ss_pred             HHHHCCCHH-CC--CCHH-----HHHHHHHCCCCCCCCCEEEEEE----EEEEEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             875201200-03--8725-----6632431157321583134566----6434411232100001233443100232246
Q gi|254781095|r  119 LRHGIGGFH-FF--YGIP-----GSIGGAAYMNAGANNCETSQYV----VEVHGIDRKGNQHVIPREQLKYQYRSSEITK  186 (318)
Q Consensus       119 ~~~gl~GlE-~l--~gIP-----GTVGGAi~mNAGayG~ei~d~i----~~V~~~d~~g~~~~l~~~e~~f~YR~S~~~~  186 (318)
                      .+ -+..|- -+  .+=|     |||||.++. +...+. +.-.+    -.|++...+| .++++-+|+--+||.+.++.
T Consensus        79 ~~-~~p~L~~a~~~ia~~qIRn~aTiGGNl~~-a~p~~D-~~~~L~Al~A~v~l~~~~g-~R~vpl~df~~g~~~t~l~~  154 (167)
T d1jroa4          79 EG-PHPALAGLLRRFASEQVRQVATIGGNIAN-GSPIGD-GPPALIAMGASLTLRRGQE-RRRMPLEDFFLEYRKQDRRP  154 (167)
T ss_dssp             TT-TCHHHHHHHHTSSCHHHHTTCBHHHHHHH-CCTTCS-HHHHHHHTTCEEEEEBTTB-CCCCBGGGGEEETTEESCCT
T ss_pred             HH-HHHHHHHHHHHHCCHHHHEEEEECCCEEE-CCCCCC-CHHHHHHHHEEEEEECCCC-EEEEEHHHHCCCHHHHCCCC
T ss_conf             63-67999999986348756225575252233-352455-3789998542799971884-08988899567613316898


Q ss_pred             CCCEEEEEC
Q ss_conf             762001002
Q gi|254781095|r  187 DLIITHVVL  195 (318)
Q Consensus       187 ~~iIl~a~l  195 (318)
                      +.+|+++.+
T Consensus       155 ~Eii~~i~i  163 (167)
T d1jroa4         155 GEFVESVTL  163 (167)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEEC
T ss_conf             966999982


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Xanthine dehydrogenase chain A, domain 3
species: Rhodobacter capsulatus [TaxId: 1061]