HHSEARCH alignment of GI: 254781095 and SCOP domain: d2i0ka2

Alignment
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}
Probab=99.62  E-value=7.5e-16  Score=117.57  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=123.1

Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEE---EECC-CEE--CCHHHHCCCCCCCE--EEE-CCCCC
Q ss_conf             76614889999689899999999856-299899984752036---6048-840--22022112344311--330-26651
Q gi|254781095|r   34 RTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNIL---VRDA-GIR--GVVLRLSNAGFSNI--EVR-NHCEM  103 (318)
Q Consensus        34 rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil---~~D~-~~~--G~vI~l~~~~~~~i--~~~-~~~~i  103 (318)
                      .+...+.+++.|+|++|+++++++++ +++|+.+.|+|++.-   ..+. ...  .+++.++.  ++.+  +.+ +...+
T Consensus        26 ~~~~~p~~v~~P~s~edV~~~V~~A~~~~~~v~~~G~Ghs~~g~~~~~~~~~~~~~~~~~l~~--~~~i~~~~d~~~~~v  103 (216)
T d2i0ka2          26 EIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTH--LNGITVNTGGPVATV  103 (216)
T ss_dssp             SSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTT--SCCEEEECCSSSCEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC--CCCCCCCCCCCCCEE
T ss_conf             624687989967989999999999986771599971754456982541357633799995555--456642246666457


Q ss_pred             CCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCC---------------CCCEEEEEEEEEEEECCCCCEE
Q ss_conf             2331122156777788752012000387256632431157321---------------5831345666434411232100
Q gi|254781095|r  104 IVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGA---------------NNCETSQYVVEVHGIDRKGNQH  168 (318)
Q Consensus       104 ~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGa---------------yG~ei~d~i~~V~~~d~~g~~~  168 (318)
                      ++++|+.|.++.+++.++|+.-..+-..-+.||||++.+|++.               ||. ++|+|.++++++.+|++.
T Consensus       104 ~v~aG~~~~~l~~~l~~~g~~l~~~~~~~~~tigG~~~~~~~g~~~~~~gg~g~~~~~yG~-~~d~v~~~~vV~~dG~i~  182 (216)
T d2i0ka2         104 TAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGS-LSNLVTELTAVVWNGTTY  182 (216)
T ss_dssp             EEETTSBHHHHHHHHHHTTEECSSCCSCTTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSC-GGGGEEEEEEEEECSSSE
T ss_pred             EEEEEECHHHHHHHHHHCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCEECC-HHHEEEEEEEEECCCCEE
T ss_conf             8986521235444454148632367871223641566797157411377245456422567-678189899992799899


Q ss_pred             E---ECCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             0---012334431002322467620010023545
Q gi|254781095|r  169 V---IPREQLKYQYRSSEITKDLIITHVVLRGFP  199 (318)
Q Consensus       169 ~---l~~~e~~f~YR~S~~~~~~iIl~a~l~l~~  199 (318)
                      +   .+++|..+.+|.+... -.||++++|++.|
T Consensus       183 ~~~~~~~~d~~~~~~~~~~g-~giit~~tl~~~P  215 (216)
T d2i0ka2         183 ALETYQRNDPRITPLLTNLG-RCFLTSVTMQAGP  215 (216)
T ss_dssp             EEEEEETTSGGGHHHHSCTT-SSCEEEEEEECEE
T ss_pred             EECCCCCCCCCHHHHHHCCC-CEEEEEEEEEECC
T ss_conf             94476679803205887487-4899999999758


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]