RPSBLAST alignment for GI: 254781095 and conserved domain: pfam01565
>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 138
Score = 56.4 bits (137), Expect = 8e-09
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 39 AEVMFQPQDIHDLKYFLTLLPS-DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEV 97
+ +P+ ++ + L +P+ + G GS+ L+ DA GVVL LS + I
Sbjct: 1 PAAVVRPESEEEVAAIVRLANEHGLPVLVRGGGSS-LLGDAVTGGVVLDLSR--LNGILE 57
Query: 98 RNHCEMI--VGARCSGKSLANSALRHG-IGGFHFFYGIPGSIGGAAYMNAGANNCE---- 150
+ V A + L + G + G GIPG++GGA N G E
Sbjct: 58 IDPENGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSEKYGL 117
Query: 151 TSQYVVEVHGIDRKGNQHVI 170
T V+ + + G +
Sbjct: 118 TRDNVLSLEVVLADGEVVRL 137