HHsearch alignment for GI: 254781096 and conserved domain: COG0769
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=95.45 E-value=0.0045 Score=40.04 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=90.5
Q ss_pred CCHHHCCCCCEEEECCCC-CCCCHHHHHHHHCC-CCEEEHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 997886889899988898-99998899999779-949953899886411-685158704578404778888640344443
Q gi|254781096|r 59 HKVENIDNAEILVLSTAI-DKDNVECIAARERN-IPIIFRSEMLAGLMR-CRKSISVSGTHGKTTTTSLIAALLEQGKFD 135 (474)
Q Consensus 59 ~~~~~i~~~d~vV~spgi-~~~~~~l~~a~~~g-i~i~~~~e~l~~~~~-~~~~IaVTGTnGKTTTt~ml~~il~~~g~~ 135 (474)
T Consensus 15 ~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~ 92 (475)
T COG0769 15 LDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLK 92 (475)
T ss_pred CCHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEEECCCC--CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 2365637684799973235245344065762897799970555--55456787799868537778889985238657851
Q ss_pred EEEEECCCCCCCCCC-----CC-CC-CCCCCHHHCCCC-CCHHH---HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCC
Q ss_conf 057535733333100-----14-68-542001102322-10122---118553034222022011000255666643013
Q gi|254781096|r 136 PTVINGGIINSYGTN-----AR-IG-TSEWIVVEADES-DGTFI---RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKF 204 (474)
Q Consensus 136 ~~~~~G~~~~~~~~~-----~~-~~-~~~~~V~E~~e~-~~s~~---~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i 204 (474)
T Consensus 93 vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvssh~l 172 (475)
T COG0769 93 VIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGL 172 (475)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECHHHH
T ss_conf 89863878579999999999886298258999776632688634566789217899999999997388099988503479
Q ss_pred CCCCCCCCCCCCCCCCCHH
Q ss_conf 3333322222223465013
Q gi|254781096|r 205 IDNIPFYGFAVVCMDHPEV 223 (474)
Q Consensus 205 ~~~~~~~g~~vin~Dd~~~ 223 (474)
T Consensus 173 ~~~Rv~~~~f~v~-~ftnl 190 (475)
T COG0769 173 VQGRVEGVTFDVG-VFTNL 190 (475)
T ss_pred HHCCCCCCEEEEE-CCCCC
T ss_conf 7578656359886-45665