HHsearch alignment for GI: 254781096 and conserved domain: COG0770
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=377.25 Aligned_cols=334 Identities=26% Similarity=0.418 Sum_probs=270.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC----CCCCCCCHHHCCCCC-CHH----HHCCCCC
Q ss_conf 8515870457840477888864034444305753573333310014----685420011023221-012----2118553
Q gi|254781096|r 107 RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR----IGTSEWIVVEADESD-GTF----IRLPSDI 177 (474)
Q Consensus 107 ~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~----~~~~~~~V~E~~e~~-~s~----~~~~P~i 177 (474)
T Consensus 103 ~kvIaITGS~GKTTTKe~la~iL~~~~~-v~~t~gn~Nn~iGlPltll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~i 181 (451)
T COG0770 103 AKVIAITGSNGKTTTKEMLAAILSTKGK-VHATPGNFNNEIGLPLTLLRLPADTEYAVLEMGMNHPGEIAELSEIARPDI 181 (451)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCE-EECCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCE
T ss_conf 9689995899707699999999863680-746787668654415689747776647999868997774788844058988
Q ss_pred EEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 03422202201100025566664301333333222222234650134543200111233333332222022102112584
Q gi|254781096|r 178 VVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGR 257 (474)
Q Consensus 178 aVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~ 257 (474)
T Consensus 182 avItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~ 261 (451)
T COG0770 182 AVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEG 261 (451)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEECCCC
T ss_conf 99838059998742889999999999981568786799878617778777635787579976887775256778983885
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-
Q ss_conf 2013555113444442000023567654333221121001232100000013343100001582211014786047630-
Q gi|254781096|r 258 SIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD- 336 (474)
Q Consensus 258 ~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD- 336 (474)
T Consensus 262 ~~f~~~~~~~~~-------~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~ 334 (451)
T COG0770 262 SSFTLDIEGGEA-------EFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPVKGRLEVILLANGKTLIDDS 334 (451)
T ss_pred EEEEEEECCCEE-------EEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECC
T ss_conf 079998068337-------9994578476899999999999981999999999998637888663367648981899737
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEE-ECCCCHH-HHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 244554302223331013443210333-0366314-78889999999861--8999990866677643238999999999
Q gi|254781096|r 337 YGHHPIEISSVLAAVRQICPRKIIAIH-QPHRYSR-LSTLFDQFSSCFGD--ADIVLISPVYSAGEKEIPGFSSPELVKN 412 (474)
Q Consensus 337 yahnP~~i~atl~al~~~~~~rii~i~-~p~~~sr-~~~~~~e~~~~l~~--ad~vil~~i~~~~e~~~~g~~~~~l~~~ 412 (474)
T Consensus 335 YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~-----------G~~~~~i~~~ 403 (451)
T COG0770 335 YNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLV-----------GELSKAIAEA 403 (451)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEE-----------CCCHHHHHHH
T ss_conf 88998999999999963766885799477666385489999999999985695099997-----------6206999986
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99638998999889899999999855898799994489988999999999874
Q gi|254781096|r 413 IKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELEL 465 (474)
Q Consensus 413 i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~~~~~~~~~~~~l~~ 465 (474)
T Consensus 404 ~~----~~~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr~~~l--e~vv~~l~~ 450 (451)
T COG0770 404 LG----NKGIYFADKEELITSLKALLRKGDVVLVKGSRGMKL--EKVVDALLG 450 (451)
T ss_pred CC----CCEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHHHC
T ss_conf 57----775860777999999998567787899973764657--999999831