HHsearch alignment for GI: 254781096 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=100.00 E-value=0 Score=469.90 Aligned_cols=376 Identities=25% Similarity=0.315 Sum_probs=299.3
Q ss_pred CCHHHCCCCCEEEECCCCCC-CCHHHHHHHHCCCC-EEEH---------------HHHHHHHH--------CCCCCEEEE
Q ss_conf 99788688989998889899-99889999977994-9953---------------89988641--------168515870
Q gi|254781096|r 59 HKVENIDNAEILVLSTAIDK-DNVECIAARERNIP-IIFR---------------SEMLAGLM--------RCRKSISVS 113 (474)
Q Consensus 59 ~~~~~i~~~d~vV~spgi~~-~~~~l~~a~~~gi~-i~~~---------------~e~l~~~~--------~~~~~IaVT 113 (474)
T Consensus 27 ~DSR~v~~g~lFval~G~~~DGh~fi~~Ai~~GA~avv~~~~~~~~~~~i~V~d~~~al~~la~~~y~~~~~~l~vIgIT 106 (481)
T PRK00139 27 YDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEPDVEAAVPVIVVPDLRRALALLAAAFYGNPSDKLKLIGVT 106 (481)
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHCCCEEEEE
T ss_conf 63771899978999166778989999999986997999847767898599989999999999999870804318089995
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CC-----------------CCCCCCCCHHHCCCC---CCHH
Q ss_conf 457840477888864034444305753573333310---01-----------------468542001102322---1012
Q gi|254781096|r 114 GTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGT---NA-----------------RIGTSEWIVVEADES---DGTF 170 (474)
Q Consensus 114 GTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~---~~-----------------~~~~~~~~V~E~~e~---~~s~ 170 (474)
T Consensus 107 GTnGKTTt~~~l~~iL~~~g~~~~-~igT~g~~~~~~~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSShgl~q~Rv 185 (481)
T PRK00139 107 GTNGKTTTAYLIAQILRLLGKKAA-LIGTLGNGLGGTLIPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSSHALDQGRV 185 (481)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCE-EECCCCEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCC
T ss_conf 899843499999999987498631-4302211418730366789887688999999999879977999843035552213
Q ss_pred HHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCCCEEEE
Q ss_conf 2118553034222022011000255666643013333332222222346501345432001112333333-322220221
Q gi|254781096|r 171 IRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR-HPQADIRYS 249 (474)
Q Consensus 171 ~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~-~~~~d~~~~ 249 (474)
T Consensus 186 ~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~~~-~~aViN~DD~~~~~~~~~~~-~~~it~g~~~~~ad~~~~ 263 (481)
T PRK00139 186 DGLTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAELGL-KAAVINADDEVGARLLAALP-ATVVTYSIEDHGADLRAT 263 (481)
T ss_pred CCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCC-CCEEEECCCHHHHHHHHHCC-CCCCEECCCCCCCEEEEE
T ss_conf 4887568999657677853437899999999999746578-82499468889999999717-885254047888608999
Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 02112584201355511344444200002356765433322112100123210000001334310000158221101478
Q gi|254781096|r 250 NIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWN 329 (474)
Q Consensus 250 ~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~ 329 (474)
T Consensus 264 ~i~~~~~g~~f~l~~~~~~-------~~v~l~l~G~hNv~NalaAiava~~lGi~~~~i~~~L~~~~~v~GRmE~i~~~~ 336 (481)
T PRK00139 264 DIEFSAQGVSFTLVTPWGE-------GEVESPLIGRFNVSNLLAAIAALLALGVPLEDILKALAKLRPVPGRMERVGAGG 336 (481)
T ss_pred EEEECCCCEEEEEEECCEE-------EEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 9998489619999958937-------999967887888987999999999839898999999834999999868998799
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 60476302445543022233310134432103330366314788899999998-61899999086667764323899999
Q gi|254781096|r 330 DVHVFDDYGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCF-GDADIVLISPVYSAGEKEIPGFSSPE 408 (474)
Q Consensus 330 gv~~idDyahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l-~~ad~vil~~i~~~~e~~~~g~~~~~ 408 (474)
T Consensus 337 ~~~vivDYAHtP~sl~~~L~~lr~~~~~rli~VfG~gG-~Rd~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~------~ 409 (481)
T PRK00139 337 GPLVIVDYAHTPDALEKVLDALRPHAKGRLICVFGCGG-DRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPA------A 409 (481)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHH------H
T ss_conf 96899976899899999999998764898699989867-7770141899999997199899939998998999------9
Q ss_pred HHHHHHHCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 999999638-9989998898999999998558987999944899
Q gi|254781096|r 409 LVKNIKLQG-HPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451 (474)
Q Consensus 409 l~~~i~~~~-~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~ 451 (474)
T Consensus 410 I~~~i~~g~~~~~~~~i~dR~~AI~~ai~~a~~~d~vliaGKGh 453 (481)
T PRK00139 410 IIADILAGITHANAVVIEDRAEAIKYAIALAKPGDVVLIAGKGH 453 (481)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 99999826987992897899999999998559999999973587