HHsearch alignment for GI: 254781096 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=566.48 Aligned_cols=413 Identities=21% Similarity=0.291 Sum_probs=320.2
Q ss_pred HHHCC-EEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEE-CCCHHHCCCCCEEEECCCCCCCCH
Q ss_conf 31276-0799946146087899999987986999607899889999988988996-799788688989998889899998
Q gi|254781096|r 4 PQGMG-PIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSI-GHKVENIDNAEILVLSTAIDKDNV 81 (474)
Q Consensus 4 ~~~~~-~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~-g~~~~~i~~~d~vV~spgi~~~~~ 81 (474)
T Consensus 13 ~~~l~~kvlV~GlG~SG~s-~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p 91 (476)
T PRK00141 13 PDALRGRVLVAGAGVSGLG-IAKMLSELGCDVVVADDNETQRHMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPDSP 91 (476)
T ss_pred HHHHCCCEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCCCH
T ss_conf 6986998899922788999-999999789979999899870357887479856515530656468999998997899799
Q ss_pred HHHHHHHCCCCEEEHHHHHHHHHC------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCC
Q ss_conf 899999779949953899886411------6851587045784047788886403444430575357333331001-468
Q gi|254781096|r 82 ECIAARERNIPIIFRSEMLAGLMR------CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA-RIG 154 (474)
Q Consensus 82 ~l~~a~~~gi~i~~~~e~l~~~~~------~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~-~~~ 154 (474)
T Consensus 92 ~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNIG~p~~~~l~~~~ 170 (476)
T PRK00141 92 LLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAA-VAVGNIGIPVSAALVAQN 170 (476)
T ss_pred HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHHHHCCC
T ss_conf 9999998799577199999986116433677763889689967989999999998379972-899506724666652578
Q ss_pred CCCCCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 54200110232210122-11855303422202201100025566664301333333222222234650134543200111
Q gi|254781096|r 155 TSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNR 233 (474)
Q Consensus 155 ~~~~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~ 233 (474)
T Consensus 171 ~~d~~VlElSSfQL~~~~~~~p~iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~----~~~vi~~Dd~~~~~~~~~~~~~ 246 (476)
T PRK00141 171 RIDVLVAELSSFQLHWAPTFTPDAGVVLNLAEDHIDWHGSMRDYALDKARVLTA----PVAVIGADDPYVVELTREADLS 246 (476)
T ss_pred CCCEEEEECCCCHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHCCCC
T ss_conf 775899977820120022368658987268878986626999999999987348----8249977878999988744788
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHH
Q ss_conf 23333333222202210211258420135551134444420000235676543332211210012321000000133431
Q gi|254781096|r 234 KIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLA 313 (474)
Q Consensus 234 ~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~ 313 (474)
T Consensus 247 ~~~~~s~~~~~~~~~~---~~~~~~-~~~~~-~~---~~~l~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~ 318 (476)
T PRK00141 247 GLIGFTLGEPAEGQVG---VRAGEL-VDNAF-GD---NVVLASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALA 318 (476)
T ss_pred CEEEECCCCCCCCCEE---EECCEE-EEEEC-CC---CCEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6798527875535244---776889-98515-77---5032124323776533599999999999984999999999998
Q ss_pred CCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCEEEEE
Q ss_conf 00001582211014786047630-24455430222333101344321033303663147888999999986-18999990
Q gi|254781096|r 314 SFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFG-DADIVLIS 391 (474)
Q Consensus 314 ~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~-~ad~vil~ 391 (474)
T Consensus 319 ~F~gl~HR~E~v~~~~gV~fiNDSKaTN~~---at~~AL~~~~--~iilI~G--G~~Kg~d~-~~l~~~~~~~vk~v~l- 389 (476)
T PRK00141 319 GFEVAGHRGQVVAEHDGVHFIDNSKATNPH---AADSALAGHE--SVIWVAG--GQLKGADI-DELIATHGGRIKAALV- 389 (476)
T ss_pred HCCCCCCCEEEEEEECCEEEECCCCCCCHH---HHHHHHHHCC--CCEEEEC--CCCCCCCH-HHHHHHHHHHCEEEEE-
T ss_conf 568988612799998999998179899989---9999997288--7399944--76577787-9999998633109999-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEEE------CCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 866677643238999999999996389-989998------89899999999855898799994489
Q gi|254781096|r 392 PVYSAGEKEIPGFSSPELVKNIKLQGH-PQAYYM------DSFDHLVSKILAIAEPGDFIIFFGAG 450 (474)
Q Consensus 392 ~i~~~~e~~~~g~~~~~l~~~i~~~~~-~~~~~~------~~~~eav~~~~~~~~~gDvVL~~GaG 450 (474)
T Consensus 390 ----------~G~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLL-SPa 444 (476)
T PRK00141 390 ----------LGADRAEIVAAVKEHAPDAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVL-APA 444 (476)
T ss_pred ----------ECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE-CCH
T ss_conf ----------7689899999998547888268861545788999999999973889898998-945