HHsearch alignment for GI: 254781096 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=488.99 Aligned_cols=381 Identities=21% Similarity=0.215 Sum_probs=280.2
Q ss_pred HCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 27607999461460878999999879869996078998899999889889967997886889899988898999988999
Q gi|254781096|r 6 GMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAIDKDNVECIA 85 (474)
Q Consensus 6 ~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi~~~~~~l~~ 85 (474)
T Consensus 2 ~~KkvlV~GlG~SG~s-~a~~L~~~g~~v~~~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~d~vv~SPGi~~~~p~~~~ 78 (418)
T PRK00683 2 GLQRVVVLGLGVTGKS-VARFLAQKGVYVIGVDNSLEAL-QSCPYIHERY-LEGAEEFPEQVDLVVRSPGIKPYHPWVEA 78 (418)
T ss_pred CCCEEEEEEECHHHHH-HHHHHHHCCCEEEEECCCHHHH-HHCCHHHHHC-CCCHHHCCCCCCEEEECCCCCCCCHHHHH
T ss_conf 9866999808887999-9999997829899982981454-5461455540-56233242349899989985998899999
Q ss_pred HHHCCCCEEEHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 997799499538998864--116851587045784047788886403444430575357333331001468542001102
Q gi|254781096|r 86 ARERNIPIIFRSEMLAGL--MRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEA 163 (474)
Q Consensus 86 a~~~gi~i~~~~e~l~~~--~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~V~E~ 163 (474)
T Consensus 79 a~~~~i~i~seiel~~~~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~-~~~GNIG~p~l~~--~~~~~~~VlEl 155 (418)
T PRK00683 79 AVALKIPVVTDIQLAFQTPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGIPA-FAMGNIGLPILDG--MQQPGVRVVEI 155 (418)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCC-EEEECCCHHHHHH--HCCCCCEEEEE
T ss_conf 99869975407999974244147987999768986609999999998679981-8880346577764--32589469983
Q ss_pred CCCCCH-HHHCCCCC--EEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 322101-22118553--034222022011000255666643013333332222222346501345432001112333333
Q gi|254781096|r 164 DESDGT-FIRLPSDI--VVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240 (474)
Q Consensus 164 ~e~~~s-~~~~~P~i--aVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~ 240 (474)
T Consensus 156 SSfQL~~~~~~~p~~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 225 (418)
T PRK00683 156 SSFQLADQEESIPVLSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV---------- 225 (418)
T ss_pred EHHHHHHHHHCCCCCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH----------
T ss_conf 1242321243077622121015784241221689999999999998467976468525411017888877----------
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHCHHHHHHHHHHCCCCCC
Q ss_conf 322220221021125842013555113444442000023567654333221121001232-1000000133431000015
Q gi|254781096|r 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK-LGLSSEDVKKGLASFSGIK 319 (474)
Q Consensus 241 ~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~-lgi~~e~i~~~L~~f~g~~ 319 (474)
T Consensus 226 -~~~~------------~----~~~----------~~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glp 278 (418)
T PRK00683 226 -QEIM------------R----LLD----------KGSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPP 278 (418)
T ss_pred -HHHH------------H----HHC----------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf -7777------------7----744----------531016544032988999999999857999999999997348841
Q ss_pred CCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCC
Q ss_conf 82211014786047630-244554302223331013443210333036631478889999999861-8999990866677
Q gi|254781096|r 320 RRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAG 397 (474)
Q Consensus 320 ~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~ 397 (474)
T Consensus 279 HR~E~v~~~~Gv~fiNDSKaTN~~---a~~~AL~s~-~~~iilI~GG--~~K~~d-~~~L~~~~~~~vk~v~~------- 344 (418)
T PRK00683 279 HRMEYLGEKDGVHYINDSKATTVS---AVEKALLAV-GKDVIVILGG--RNKGGD-FPSLLPVLRQTAKHVVA------- 344 (418)
T ss_pred CCEEEEEEECCCEEECCCCCCCHH---HHHHHHHHC-CCCCEEEECC--CCCCCC-HHHHHHHHHHCCCEEEE-------
T ss_conf 113688881782376377678989---999999856-7885899757--876678-69999998631849999-------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6432389999999999963899899988989999999985589879999448
Q gi|254781096|r 398 EKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGA 449 (474)
Q Consensus 398 e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~Ga 449 (474)
T Consensus 345 ----~G~~~~~i~~~l~~--~~~~~~~~~l~eAv~~a~~~a~~gd~VLLSPa 390 (418)
T PRK00683 345 ----MGECRQEIAQALSE--KFPLTVVKDLQEAVSCAQEIAQPGDVILLSPG 390 (418)
T ss_pred ----ECCCHHHHHHHHHC--CCCEEECCCHHHHHHHHHHHCCCCCEEEECCC
T ss_conf ----68899999998756--99879859899999999984789898998975