HHsearch alignment for GI: 254781096 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=562.20 Aligned_cols=414 Identities=20% Similarity=0.244 Sum_probs=313.6
Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHCCCEEEECCCHHHC-CCCCEEEECCCCCCCCHH
Q ss_conf 6079994614608789999998798699960789----98899999889889967997886-889899988898999988
Q gi|254781096|r 8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVIL----GPNVQRLHKQGIKVSIGHKVENI-DNAEILVLSTAIDKDNVE 82 (474)
Q Consensus 8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~----~~~~~~L~~~gi~i~~g~~~~~i-~~~d~vV~spgi~~~~~~ 82 (474)
T Consensus 15 k~v~V~GlG~sG~s~-a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~ 93 (481)
T PRK01438 15 LRVVVAGLGVSGFPA-ADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPTHPL 93 (481)
T ss_pred CEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 989999575889999-9999967998999979987448689998885498899688756662489999989978998999
Q ss_pred HHHHHHCCCCEEEHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 99999779949953899886411----6851587045784047788886403444430575357333331001-468542
Q gi|254781096|r 83 CIAARERNIPIIFRSEMLAGLMR----CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA-RIGTSE 157 (474)
Q Consensus 83 l~~a~~~gi~i~~~~e~l~~~~~----~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~-~~~~~~ 157 (474)
T Consensus 94 ~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNIG~p~l~~~~~~~~~d 172 (481)
T PRK01438 94 LAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTTVQMLASILRAAGLRA-AAVGNIGVPVLDAVRGPDGYD 172 (481)
T ss_pred HHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHCCCCCCC
T ss_conf 9999986993861899999875213688878999389974609999999999669970-799625677776422888860
Q ss_pred CCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC---CC
Q ss_conf 00110232210122-118553034222022011000255666643013333332222222346501345432001---11
Q gi|254781096|r 158 WIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ---NR 233 (474)
Q Consensus 158 ~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~---~~ 233 (474)
T Consensus 173 ~~V~ElSSfqL~~~~~~~p~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~--~~v~n~dD~~~~~l~~~~~~~~~~ 250 (481)
T PRK01438 173 VLAVELSSFQLHWAPSVRPHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV--ACVYNVADPATEDLVREADVVEGA 250 (481)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE--EEEEECCCHHHHHHHHHCCCCCCC
T ss_conf 899980476513344557648997068777866523598999999998627851--499705778899999860224477
Q ss_pred CCCCCCCCCCC--CEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHH
Q ss_conf 23333333222--2022102112584201355511344444200002356765433322112100123210000001334
Q gi|254781096|r 234 KIITYGRHPQA--DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKG 311 (474)
Q Consensus 234 ~v~~fg~~~~~--d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~ 311 (474)
T Consensus 251 ~~i~f~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~a 325 (481)
T PRK01438 251 RAIGFTLGTPGPSDLGIVDGILVD-RA-F---VEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDG 325 (481)
T ss_pred CEEEEECCCCCCCCCCEECCEEEE-CE-E---EEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 078873588871201210345530-20-3---430234530001066406765769999999999999829988999988
Q ss_pred HHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCCEEE
Q ss_conf 3100001582211014786047630-2445543022233310134432103330366314788899999998-6189999
Q gi|254781096|r 312 LASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCF-GDADIVL 389 (474)
Q Consensus 312 L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l-~~ad~vi 389 (474)
T Consensus 326 L~~F~Gl~hR~E~v~~~~GV~fiNDSKaTN~~A~---~~AL~~~~--~i~lI~G--G~~Kg~d~-~~l~~~~~~~vk~~~ 397 (481)
T PRK01438 326 LRAFRPDAHRIEHVADADGVTYVDDSKATNPHAA---EASLAAYP--SVVWIAG--GLAKGAHF-DDLVRAHAARLRGVV 397 (481)
T ss_pred HHHCCCCCCEEEEEEEECCEEEECCCCCCCHHHH---HHHHHHCC--CEEEEEC--CCCCCCCH-HHHHHHHHHHCEEEE
T ss_conf 8634897733789999999999806887898899---99987249--8899937--86578898-999999860133999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHCCC-CCEE-----EECCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 90866677643238999999999996389-9899-----9889899999999855898799994489
Q gi|254781096|r 390 ISPVYSAGEKEIPGFSSPELVKNIKLQGH-PQAY-----YMDSFDHLVSKILAIAEPGDFIIFFGAG 450 (474)
Q Consensus 390 l~~i~~~~e~~~~g~~~~~l~~~i~~~~~-~~~~-----~~~~~~eav~~~~~~~~~gDvVL~~GaG 450 (474)
T Consensus 398 l-----------~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLl-SPa 452 (481)
T PRK01438 398 L-----------IGADRALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLL-APA 452 (481)
T ss_pred E-----------ECCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE-CCH
T ss_conf 9-----------778999999999722898745773102378999999999963899898998-950