HHsearch alignment for GI: 254781096 and conserved domain: PRK03803

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=580.86  Aligned_cols=409  Identities=21%  Similarity=0.283  Sum_probs=327.7

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHH--CCCEEEECC-CHHHCCCCCEEEECCCCCCCCHHH
Q ss_conf             60799946146087899999987986999607899-88999998--898899679-978868898999888989999889
Q gi|254781096|r    8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG-PNVQRLHK--QGIKVSIGH-KVENIDNAEILVLSTAIDKDNVEC   83 (474)
Q Consensus         8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~-~~~~~L~~--~gi~i~~g~-~~~~i~~~d~vV~spgi~~~~~~l   83 (474)
T Consensus         8 ~~~LV~G~G~sG~s-~a~~L~~~G~~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~SPgI~~~~p~~   86 (448)
T PRK03803          8 GLRIVVGLGKSGMS-LVRFLARQGYQFAVTDTRENPPELATLRRDYPQVEVRCGELDAEFLCQAEEIIVSPGLALATPAL   86 (448)
T ss_pred             CCEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCCCCCHHH
T ss_conf             95899998999999-99999978895999918999167999997479977997888977807899999899729999999


Q ss_pred             HHHHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf             99997799499538998864116851587045784047788886403444430575357333331001468542001102
Q gi|254781096|r   84 IAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEA  163 (474)
Q Consensus        84 ~~a~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~V~E~  163 (474)
T Consensus        87 ~~a~~~~i~i~~e~el~~~~~~-~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~gGNiG~p~-~~~~~~~~~~~VlEl  163 (448)
T PRK03803         87 QAAAAAGIKISGDIELFARAAK-APIVAITGSNAKSTVTTLVGEMAKAAGKRV-AVGGNLGTPA-LDLLSDDVELYVLEL  163 (448)
T ss_pred             HHHHHCCCCEECHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHH-HHHHCCCCCEEEEEC
T ss_conf             9999859968319999862178-988998589983889999999998659837-9940327613-665258887899986


Q ss_pred             CCCC-CHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             3221-012211855303422202201100025566664301333333222222234650134543200111233333332
Q gi|254781096|r  164 DESD-GTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHP  242 (474)
Q Consensus       164 ~e~~-~s~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~  242 (474)
T Consensus       164 SSfqL~~~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~~~---~v~n~Dd~~~~~l~~~--~~~~~~f~~~~  238 (448)
T PRK03803        164 SSFQLETTDQLNAEVATVLNISEDHLDRHGGMLAYHQAKHRIFRGAKQ---VVVNRDDALTRPLVAD--GTPCWSFGLNA  238 (448)
T ss_pred             CCCHHHCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHC--CCCEEEEECCC
T ss_conf             641120354568628998358753654633899999998777538878---9995860888888654--88579983577


Q ss_pred             CCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCE
Q ss_conf             22202210211258420135551134444420000235676543332211210012321000000133431000015822
Q gi|254781096|r  243 QADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRF  322 (474)
Q Consensus       243 ~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~  322 (474)
T Consensus       239 ~-~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~  310 (448)
T PRK03803        239 P-DFGAFGLREEDGEKYLAFG-------FERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRC  310 (448)
T ss_pred             C-CCCCCCEEECCCEEEEECC-------CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             6-5122316953983999616-------5321433330767623599899999999982998789899886355712057


Q ss_pred             EEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCCCCC
Q ss_conf             11014786047630-244554302223331013443210333036631478889999999861-8999990866677643
Q gi|254781096|r  323 TLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAGEKE  400 (474)
Q Consensus       323 e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~e~~  400 (474)
T Consensus       311 E~v~~~~Gv~fiNDSKaTN~~at~~Al~~~~~~~~~~iilI~G--G~~K~~d-~~~l~~~~~~~v~~v~l----------  377 (448)
T PRK03803        311 QWVREVDGVRYYNDSKGTNVGATLAAIEGLGADIEGKLVLIAG--GQGKGAD-FSELREPVAKYCRAVVL----------  377 (448)
T ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCC-HHHHHHHHHHCCEEEEE----------
T ss_conf             9999618889996899899789999999646523686899937--8666668-79999999736609999----------


Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             23899999999999638998999889899999999855898799994489
Q gi|254781096|r  401 IPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAG  450 (474)
Q Consensus       401 ~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG  450 (474)
T Consensus       378 -~G~~~~~i~~~l~~--~~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPa  423 (448)
T PRK03803        378 -IGRDAELIEQALGD--AVPLVRAATLEEAVTQAAELAQPGDAVLL-SPA  423 (448)
T ss_pred             -ECCCHHHHHHHHCC--CCCEEECCCHHHHHHHHHHHCCCCCEEEE-CCC
T ss_conf             -79599999997506--89879949999999999985789898998-974